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ICM-Chemist Tutorials |
Version: ICM-Chemist 3.6-1g Last Updated: 12/01/2009
PDF version of all the ICM-Chemist tutorials can be downloaded here.
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| How to Import, Sketch, and Edit Chemicals | ||
| How to access the ICM Molecular Editor. | HTML GUI Manual | video |
| How to sketch chemicals in the ICM Molecular Editor. | HTML GUI Manual | video |
| How to save a 2D sketch into a chemical spreadsheet. | HTML GUI Manual | video |
| How to save a 2D sketch in mol format. | HTML GUI Manual | video |
| How to use SMILES strings to sketch a chemical. | HTML GUI Manual | video |
| How to load a mol, sdf or mol2 file. | HTML GUI Manual | video |
| How to extract a 2D sketch of a ligand in complex with a PDB structure. | HTML GUI Manual | video |
| Working with Chemical Spreadsheets | ||
| How to add columns into a chemical spreadsheet. | HTML GUI Manual | video |
| How to sort a column(s) in a chemical spreadsheet. | HTML GUI Manual | video |
| How to change the view of a chemical spreadsheet - form, table and grid. | HTML GUI Manual | video |
| How to copy, cut and paste columns and rows in a chemical spreadsheet. | HTML GUI Manual | video |
| How to show and hide columns and rows in a chemical spreadsheet. | HTML GUI Manual | video |
| How to save a chemical spreadsheet in sdf format. | HTML GUI Manual | video |
| How to export your chemical spreadsheet into Excel. | HTML GUI Manual | video |
| How to print a chemical spreadsheet. | HTML GUI Manual | video |
| How to filter columns in a chemical spreadsheet. | HTML GUI Manual | video |
| How to use find and replace in a chemical spreadsheet. | HTML GUI Manual | video |
| How to mark and label rows in a chemical spreadsheet. | HTML GUI Manual | video |
| How to insert hyperlinks to the PDB, PubMed, and Uniprot. | HTML GUI Manual | video |
| How to copy and paste 2D chemicals. | HTML GUI Manual | video |
| How to edit data inside a chemical spreadsheet. | HTML GUI Manual | video |
| How to remove salts, explicit hydrogens and standardize chemical groups. | HTML GUI Manual | video |
| How to calculate chemical properties in a chemical spreadsheet. | HTML GUI Manual | video |
| How to identify duplicate chemicals in a chemical spreadsheet. | HTML GUI Manual | video |
| How to compare two chemical spreadsheets. | HTML GUI Manual | video |
| How to merge two chemical spreadsheets. | HTML GUI Manual | video |
| How to Perform Chemical Searching | ||
| How to setup a chemical search. | HTML GUI Manual | video |
| How to draw a chemical search query. | HTML GUI Manual | video |
| How to add conditions to your chemical search. | HTML GUI Manual | video |
| How to search chemical spreadsheets, local databases and MolCart. | HTML GUI Manual | video |
| How to send a chemical search query. | HTML GUI Manual | video |
| How to Work with Pharmacophores | ||
| How to search a 2D pharmacophore. | HTML GUI Manual | video |
| How to extract a 3D pharmacophore from a ligand. | HTML GUI Manual | video |
| How to edit a 3D pharmacophore. | HTML GUI Manual | video |
| How to send a 3D pharmacophore search query. | HTML GUI Manual | video |
| How to color a 2D chemical sketch by pharmacophore feature. | HTML GUI Manual | video |
| How to Perform Chemical Clustering | ||
| How to perform chemical clustering. | HTML GUI Manual | video |
| How to select representative centers from a tree. | HTML GUI Manual | video |
| How to reorder branches and change the distance of trees. | HTML GUI Manual | video |
| How to edit the tree - labels, spacing and coloring. | HTML GUI Manual | video |
| How to Generate Stereoisomers and Tautomers | ||
| How to generate stereoisomers. | HTML GUI Manual | video |
| How to generate tautomers. | HTML GUI Manual | video |
| How to Generate Combinatorial Libraries | ||
| How to enumerate a Markush library. | HTML GUI Manual | video |
| How to decompose a library based on a Markush structure. | HTML GUI Manual | video |
| How to create a Markush structure. | HTML GUI Manual | video |
| How to enumerate a chemical library by reaction. | HTML GUI Manual | video |
| How to Generate Plots and Histograms | ||
| How to make a histogram. | HTML GUI Manual | video |
| How to make an X-Y scatter plot. | HTML GUI Manual | video |
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