2D, 5.5.9, 16.2.21, 16.2.26, 17.4, 17.6.2, 17.6.4 | Display, 23.3.25 |
to 3D, 17.6, 17.6.3 | Distance, 18.4.9.5 |
depiction, 17.6.2 | Dock Directory, 3.4.1.15.2 |
3D, 5.5.9, 16.2.21, 16.2.26, 16.2.29, 17.6.2, 22.1.11 | Docking, 23.3.25 |
chemical, 17.6.1 | Editor, 3.4.1.15.2 |
ligand editor.add substituent, 22.6.13 | Error in saving configuation settings: You are not a license administrator, 23.10.1 |
atomic energy circles, 22.6.7 | FILTER.Z, 3.4.1.15.2 |
begin edit, 22.6.11 | gz, 3.4.1.15.2 |
center ligand, 22.6.10 | uue, 3.4.1.15.2 |
display, 22.6.4 | Filter.zip, 3.4.1.15.2 |
dock, 22.6.20 | Formula, 23.7.12, 23.7.15 |
dock-tether, 22.6.21 | Frequently Asked Questions, 23 |
edit 2D, 22.6.15 | GAMESS, 3.4.16.11, 15.11 |
fragment linkers, 22.6.23 | GIF, 3.4.1.14, 8 |
hydrogen atoms, 22.6.8 | GRAPHIC.store Display, 3.4.1.15.3 |
bond, 22.6.6 | NtoC Rainbow, 3.4.1.15.4 |
ligand setup, 22.6.1 | alignment Rainbow, 3.4.1.15.4 |
minimization, 22.6.19 | atomLabelShift, 3.4.1.15.7 |
multiple substituent, 22.6.14 | ballStickRatio, 3.4.1.15.1 |
preferences, 22.6.3 | center Follows Clipping, 3.4.1.15.3 |
purple box, 22.6.18 | clash Style, 3.4.1.15.3 |
receptor setup, 22.6.2 | clashWidth, 3.4.1.15.3 |
save spreadsheet, 22.6.17 | clip Grobs, 3.4.1.15.3 |
screen substituents, 22.6.22 | Skin, 3.4.1.15.3 |
surface, 22.6.5 | Static, 3.4.1.15.3 |
undo redo, 22.6.12 | discrete Rainbow, 3.4.1.15.4 |
unsatisfied hydrogen bonds, 22.6.9 | displayLineLabels, 3.4.1.15.7 |
object, 5.2.6 | displayMapBox, 3.4.1.15.3 |
predict, 14 | distance Label Drag, 3.4.1.15.1 |
helices strands, 14.1 | dnaBallRadius, 3.4.1.15.9 |
local flexibility, 14.3 | dnaRibbonRatio, 3.4.1.15.9 |
protein health, 14.2 | dnaRibbonWidth, 3.4.1.15.9 |
tools identify ligand binding pocket, 14.5 | dnaRibbonWorm, 3.4.1.15.9 |
oda, 14.4 | dnaStickRadius, 3.4.1.15.9 |
4D, 22.9.1 | dnaWormRadius, 3.4.1.15.9 |
64, 23.1.2 | font Scale, 3.4.1.15.7 |
APF, 17.18.5 | fontColor, 3.4.1.15.7 |
template, 17.18.4 | fontLineSpacing, 3.4.1.15.7 |
ActiveICM, 3.4.1.11 | grobLineWidth, 3.4.1.15.3 |
Area, 23.3.25 | hbond Ball Period, 3.4.1.15.1 |
Atom Single Style, 3.4.1.15.3 | Style, 3.4.1.15.1 |
Bad Groups, 23.7.12, 23.7.15 | hbondAngleSharpness, 3.4.1.15.1 |
Blast, 23.3.24 | hbondMinStrength, 3.4.1.15.1 |
BlastDB Directory, 3.4.1.15.2 | hbondStyle, 3.4.1.15.1 |
alphas, 5.5.3 | hbondWidth, 3.4.1.15.1 |
COLLADA, 3.4.1.6 | hetatmZoom, 3.4.1.15.1 |
CPK, 3.5.1, 5.1.1 | hydrogenDisplay, 3.4.1.15.1 |
CisTransAmide Angle, 18.4.9.5 | light, 3.4.1.15.3 |
Clash Threshold, 3.4.1.15.10 | lightPosition, 3.4.1.15.3 |
DNA, 3.4.1.1.4, 9, 9.2.3 | mapLineWidth, 3.4.1.15.3 |
occupancyDisplay, 3.4.1.15.3 | graphics crash, 23.10.2 |
quality, 3.4.1.15.3 | IMAGE.bondLength2D, 3.4.1.15.6 |
rainbow Bar Style, 3.4.1.15.4 | color, 3.4.1.15.6 |
resLabelDrag, 3.4.1.15.7 | compress, 3.4.1.15.6 |
resize Keep Scale, 3.4.1.15.3 | gammaCorrection, 3.4.1.15.6 |
ribbonRatio, 3.4.1.15.9 | generateAlpha, 3.4.1.15.6 |
ribbonWidth, 3.4.1.15.9 | lineWidth, 3.4.1.15.6 |
ribbonWorm, 3.4.1.15.9 | lineWidth2D, 3.4.1.15.6 |
rocking, 3.4.1.15.4 | orientation, 3.4.1.15.6 |
Range, 3.4.1.15.4 | paper Size, 3.4.1.15.6 |
Speed, 3.4.1.15.4 | previewResolution, 3.4.1.15.6 |
selectionStyle, 3.4.1.15.3 | previewer, 3.4.1.15.6 |
site Label Drag, 3.4.1.15.7 | print, 3.4.1.15.6 |
Shift, 3.4.1.15.7 | printerDPI, 3.4.1.15.6 |
siteArrow, 3.4.1.15.7 | scale, 3.4.1.15.6 |
stereoMode, 3.4.1.15.3 | stereoAngle, 3.4.1.15.6 |
stickRadius, 3.4.1.15.1 | stereoBase, 3.4.1.15.6 |
surfaceDotDensity, 3.4.1.15.3 | stereoText, 3.4.1.15.6 |
surfaceDotSize, 3.4.1.15.3 | ISIS, 23.7.8 |
surfaceProbeRadius, 3.4.1.15.3 | IUPAC, 16.8 |
transparency, 3.4.1.15.3 | Icm Prompt, 3.4.1.15.10 |
wire Width, 3.4.1.15.1 | Inx Directory, 3.4.1.15.2 |
wormRadius, 3.4.1.15.9 | JPEG, 3.4.1.14 |
xstick Backbone Ratio, 3.4.1.15.1 | KMZ, 3.4.1.6 |
Hydrogen Ratio, 3.4.1.15.1 | Log Directory, 3.4.1.15.2 |
Style, 3.4.1.15.1 | LogP, 20.6 |
Vw Ratio, 3.4.1.15.1 | LogS, 20.6 |
GROB.arrowRadius, 3.4.1.15.3 | MOL, 16, 16.1.1, 16.2.1, 16.2.21, 16.2.22, 16.2.23, 16.2.24, 18.4.3, 20.2 |
atomSphereRadius, 3.4.1.15.3 | MOL2, 16.1.1, 18.4.3 |
contourSigmaIncrement, 3.4.1.15.3 | MOLT, 21.1 |
relArrow Size, 3.4.1.15.3 | MOVIE.frame Grab Mode, 3.4.1.15.4 |
relArrowHead, 3.4.1.15.3 | Map Atom Margin, 3.4.1.15.10 |
GUI, 1 | Sigma Level, 3.4.1.15.10 |
auto Save, 3.4.1.15.4 | Markush, 17.17.6 |
Interval, 3.4.1.15.4 | create, 17.17.2 |
autoSave, 23.3.32 | Max_Fused_Rings, 17.1 |
autoSaveInterval, 23.3.32 | Mnconf, 3.4.1.15.10 |
max Sequence Length, 3.4.1.15.4 | MolIPSA, 23.7.12, 23.7.15 |
table Row Mark Colors, 3.4.1.15.4 | MolLogP, 23.7.12, 23.7.15 |
workspace Folder Style, 3.4.1.15.4 | MolLogS, 23.7.12, 23.7.15 |
workspaceTabStyle, 3.4.1.15.4 | MolPSA, 17.1 |
HBA, 23.7.12, 23.7.15 | MolVol, 17.1 |
HBD, 23.7.12, 23.7.15 | Molcart, 16.9.3 |
Hbond to selection, 18.4.9.5 | MoldHf, 17.1, 23.7.12, 23.7.15 |
How To Guide, 2 | Movie.fade Nof Frames, 3.4.1.15.4 |
Html, 4.1.8 | quality, 3.4.1.15.4 |
Hydrogen.bond, 3.4.1.15.5 | Auto, 3.4.1.15.4 |
ICM, 1 | NCBI, 23.3.24 |
Browser How To, 2.1 | NMR, 4.1.1 |
Pro How To, 2.2 | Nof_Atoms, 17.1 |
Nof_HBA, 17.1 | Reference, 20.1.31 |
Nof_HBD, 17.1 | QSAR, 20.6, 20.6.1 |
Nof_Rings, 17.1 | build model, 22.5.13 |
Nof_RotBonds, 17.1 | predict, 22.5.14 |
Non-overlap, 18.4.9.5 | R, 16.12, 17.17.5 |
Nvidia GL failutre, 23.10.2 | and S, 23.6.22 |
ODA, 23.3.25 | R-group, 16.11 |
Optimal, 23.3.25 | RMSD, 11.2 |
Output Directory, 3.4.1.15.2 | Ramachandran Plot, 10.9 |
PBS, 18.4.6 | Real Format, 3.4.1.15.10 |
PCA, 20.6.1, 20.6.3 | Receptor Setup, 18.1.5 |
analysis, 17.13 | Label Shift, 3.4.1.15.7 |
PDB, 3.4.5.3, 4.1.4, 4.1.8, 4.2, 9.1, 12.3, 16.4 | Style, 3.4.1.15.7 |
Directory, 3.4.1.15.2 | RotB, 23.7.12, 23.7.15 |
Style, 3.4.1.15.2 | SAR, 20.6 |
link, 20.1.31 | table, 17.17.6 |
Search, 3.4.2.12, 3.4.2.13, 3.4.2.14, 3.4.2.15, 3.4.2.16 | SCORE, 23.6.7, 23.6.18 |
Field, 3.4.2.13 | SDF, 16, 16.1.1, 16.2.21, 16.2.22, 16.2.23, 16.2.24, 18.4.3, 20.2 |
Homology, 3.4.2.15 | SEQUENCE.site Colors, 3.4.1.15.4 |
Identity, 3.4.2.14 | SITE.label Style, 3.4.1.15.7 |
Sequence, 3.4.2.16 | labelOffset, 3.4.1.15.7 |
convert, 4.2, 22.3.2 | wrap Comment, 3.4.1.15.7 |
query, 4.1.1.1 | SLIDE.ignore Background Color, 3.4.1.15.4 |
search, 4.1.1, 4.1.1.1, 4.1.2, 22.3.1 | Fog, 3.4.1.15.4 |
sensitive search, 4.1.2 | SMILES, 16.3.11, 16.6.2 |
similarity, 4.1.2 | Select Min Grad, 3.4.1.15.10 |
PFAM, 3.4.1.6 | Show Res Code In Selection, 3.4.1.15.7 |
PLOT.Yratio, 3.4.1.15.8 | Smiles, 23.7.12, 23.7.15, 23.7.17 |
color, 3.4.1.15.8 | Swissprot, 3.4.1.6 |
date, 3.4.1.15.8 | Dat, 3.4.1.15.2 |
draw Tics, 3.4.1.15.8 | link, 20.1.31 |
font, 3.4.1.15.8 | Temp Directory, 3.4.1.15.2 |
fontSize, 3.4.1.15.8 | UNIX, 18.4.6 |
labelFont, 3.4.1.15.8 | Uniprot, 20.1.31 |
lineWidth, 3.4.1.15.8 | VLS, 18.4, 18.4.1, 18.4.2, 18.4.6, 18.4.9.2 |
logo, 3.4.1.15.8 | preferences, 18.4.4 |
markSize, 3.4.1.15.8 | Var Label Style, 3.4.1.15.7 |
orientation, 3.4.1.15.8 | Volume, 23.7.12, 23.7.15 |
paper Size, 3.4.1.15.8 | Change, 18.4.9.5 |
previewer, 3.4.1.15.8 | Water Radius, 3.4.1.15.10 |
rainbowStyle, 3.4.1.15.8 | Wire Style, 3.4.1.15.1 |
seriesLabels, 3.4.1.15.8 | X-ray, 4.1.1, 18.1.1 |
PLS, 20.6.1 | XPDB Directory, 3.4.1.15.2 |
PNG, 3.1.19, 3.4.1.14, 8 | Xstick, 3.5.1, 5.1.1 |
Pharmacophore RMSD, 18.4.9.5 | a-bright, 3.5.2 |
Projects Directory, 3.4.1.15.2 | acceptor, 16.3.5 |
Prosite Dat, 3.4.1.15.2 | acid, 3.4.1.1.4 |
Protein, 23.3.25 | active, 7, 23.4.3 |
Viewer, 3.4.1.15.2 | activeICM, 7.1 |
PubMed, 4.1.9 | activeicm, 7, 7.4, 7.6, 7.6.1, 23.4 |
background images, 7.7 | save, 9.5.2 |
control, 7.5 | search, 9.5.9 |
activityy, 20.6 | selection, 9.5.10, 9.5.11, 9.5.12 |
add image album, 5.12.4 | sequence offset, 9.5.7 |
adding fragment, 16.3.4 | shade, 9.5.6 |
in editor, 16.3.4 | table, 9.5.7 |
administration, 16.13.4 | view, 9.5.7 |
advanced alignment selectioection, 9.5.12 | alignments, 3.3, 9.4, 22.2 |
album, 5.12.4 | alpha, 3.5.2 |
alias, 16.3.3 | channel, 3.4.1.15.6 |
align, 3.1.15, 3.3.5, 9.4.1, 17.4 | ambient, 3.5.2 |
color 2D scaffold, 17.4 | amidinium, 17.5 |
dna protein, 9.4.3 | amino, 3.4.1.1.4 |
multiple sequences, 9.4.4 | analysis, 3.4.4, 9.2 |
two sequences, 9.4.2 | angle, 3.4.7.7, 3.4.7.8, 5.5.5, 5.6, 5.9.6, 10.7, 10.8, 23.3.17, 23.5.16 |
DNA to protein, 9.2.7, 9.4.3 | angstrom, 23.5.7 |
multiple, 9.4.4 | animate, 3.4.3.15, 5.7.6 |
sequence, 9.4, 9.4.5 | view, 5.7.6 |
two sequences, 9.2.5, 9.4.2 | animation, 6.1, 6.1.1, 6.1.2, 6.1.3, 6.1.4 |
alignment, 3.3.6, 22.3.3, 22.3.5, 23.5.12 | store, 6.1.4 |
comment, 9.5.3 | animations, 6 |
editing, 9.5.1 | annotate, 17.3 |
editor, 9.5 | by substructure, 17.3 |
example, 9.2.14 | antialias, 3.4.1.14, 3.4.3.10 |
font size, 23.3.1 | lines, 3.4.3.17 |
format, 9.5.8 | lines, 3.4.3.17 |
gaps, 9.5.8 | apf, 23.7.18 |
introduction, 9.4.1 | super, 17.18.4 |
reorder, 9.2.12 | alignment, 17.18.5 |
search, 9.5.9 | apf3Dqsa, 23.7.18 |
selection, 9.5.10 | append.rows, 3.4.10.7 |
view options, 9.5.7 | applying prediction models, 20.6.2 |
box, 9.5.6 | area, 3.4.6.4, 3.4.7.3, 10.3, 14.4, 18.6, 18.6.1, 18.6.2 |
color, 9.5.5, 9.5.6 | aromatic, 16.2.26 |
comment, 9.5.3 | arrange, 3.1.18 |
consensus, 9.5.5, 9.5.12 | window, 3.1.18 |
cut, 9.2.11 | arrow, 3.4.1.1.8 |
delete, 9.5.2 | graph, 23.3.8 |
display title, 9.5.7 | as_graph, 23.3.8 |
editor, 9.5 | asparagine, 3.4.16.2, 15.2 |
extract, 9.2.10 | assign, 5.1.4 |
gaps, 9.5.8 | 2D coordinates, 17.6.2 |
horizontal scroll, 9.5.7 | helices, 3.4.6.1, 14.1 |
linked, 22.4.3 | strands, 3.4.6.1, 14.1 |
multiple, 9.2.8 | atom, 3.4.1.15.5, 16.2.26, 22.1.6, 22.1.7, 23.3.4, 23.3.5, 23.3.8, 23.3.15, 23.3.16, 23.5.10 |
options, 9.5.7 | charge, 23.5.21 |
print, 9.5.2 | atomLabelStyle, 3.4.1.15.7 |
rename, 9.5.7 | attachment, 16.3.2, 16.9.1 |
reorder, 9.2.12 | point, 17.17.3 |
ruler, 9.5.7 | author, 4.1.1.4 |
autofit, 18.5 | break, 3.1.10 |
autosave, 23.3.32 | browse, 16.2.29, 18.1.12 |
ave, 20.7 | mode, 16.2.29 |
avi, 8, 8.1 | molt, 21.2 |
axes, 20.4.11 | stack, 3.4.16.10, 15.10 |
axis, 20.4.7 | bugs, 23.10 |
options, 20.4.6 | build, 6.1.1 |
grid, 20.4.6 | homology model, 13.3 |
range, 20.4.6 | hydrogens, 3.4.16.5, 15.5 |
title, 20.4.6 | buried molSurface, 18.4.9.5 |
b-factor, 3.4.6.3, 14.3, 18.1.1, 22.3.9 | buttons, 7.6 |
backbone, 23.3.12 | bye, 3.4.1.18 |
background, 5.3.2, 5.3.3 | cache, 7.6.1 |
color shortcut, 23.3.2 | calculate, 17.1, 23.6.2 |
images activeicm, 7.7 | properties, 17.1 |
image, 5.3.3 | startup, 23.9.2 |
backup, 3.4.2.11 | carbon, 23.3.4, 23.3.5 |
bad, 17.1 | carboxylic acid, 17.5 |
groups, 16.3.5 | cartesian, 17.9 |
ball, 3.4.1.15.5 | cavities, 10 |
and stick, 3.5.1, 5.1.1 | closed, 3.4.7.4, 10.4 |
bank, 4.1.1 | ccp4, 23.3.26, 23.3.27 |
basic alignment selection, 9.5.11 | cell, 3.4.5.2, 12.2 |
basicsel, 3.2.3 | center, 3.1.2, 3.4.3.20, 5.9, 5.9.5, 20.1.31, 23.5.22 |
batch, 18.1.10, 18.4.6, 18.6.8 | and representative members, 20.7.1 |
beep, 23.3.34 | chain.breaks, 23.3.33 |
begin docking simulation, 18.1.8 | chains, 3.4.7.1 |
best, 16.2.32 | chair, 23.6.21 |
binding, 23.3.13, 23.6.2, 23.6.11 | chair-boat, 23.6.3 |
pocket, 22.3.3 | change selection, 3.2.5 |
properties, 5.2.1 | speed range, 6.1.2 |
bioinfo align dna protein, 9.2.7 | changing font in alignment editor, 9.5 |
multiple, 9.2.8 | charge, 3.4.3.21, 4.2.1, 4.2.2, 5.5.2, 16.3.2, 16.5.1, 16.5.2, 16.5.3, 16.9.1, 18.4.9.5, 23.5.1 |
two sequences, 9.2.5 | groups, 23.6.23 |
links, 9.2.9 | chem convert, 23.7.10 |
menu, 3.4.4 | save, 16.6 |
secondary structure, 9.2.2 | editor, 16.6.2 |
translation, 9.2.3 | image, 16.6.4 |
biological, 3.4.5.3, 12.3 | table, 16.6.1 |
biomolecule, 3.4.5, 3.4.5.3, 12.3, 22.3.7, 22.3.11 | workspace, 16.6.3 |
bit, 23.1.2 | super, 17.18 |
blast, 9.3 | view, 16.2.26 |
boat, 23.6.21 | chemical, 16, 16.2.25, 16.2.26, 16.2.28, 16.2.29, 16.2.32, 16.2.33, 16.3.6, 16.12, 16.13.3, 17.6.2, 17.10, 17.17.3, 17.17.7, 17.18, 20.7, 23.7.9, 23.7.10, 23.7.12, 23.7.13, 23.7.14, 23.7.15 |
bond, 4.4, 13.9, 16.3.6, 22.3.6, 23.5.1, 23.7.12, 23.7.15 | clustering, 17.12 |
covalent, 23.5.2 | dictionary, 16.3.3 |
type, 4.2.1, 4.2.2, 16.5.1, 16.5.2, 16.5.3 | draw load, 16.1 |
bonding, 5.1.9 | editor, 16.3, 16.3.4 |
preferences, 3.4.1.15.1 | not starting, 23.10.4 |
box, 3.4.1.1.9, 3.4.1.15.7, 5.5.16, 23.6.10 | find replace, 16.11 |
bpmc, 22.4.4 | fragments, 16.2.31 |
groups, 16.3.3, 16.3.4 | smiles, 17.6.3 |
right click, 16.3.2 | duplicates, 17.16 |
search, 16.9 | remove.redundant, 17.16 |
filter, 16.9.2 | chemlib.so, 23.1.2 |
text, 16.9.4 | chi, 5.5.5, 23.3.17 |
smiles, 16.1.2 | chiral, 17.11 |
spreadsheet, 23.7.19 | chirality, 17.11 |
compare, 16.2.19 | chminformaitcs tutorials, 22.5 |
spreadsheets, 16.2 | chrome, 23.4 |
structure, 16 | clash, 3.4.1.15.5, 5.5.15 |
superimpose.apf, 22.5.17 | classes, 16.2.26 |
rigid flexible, 22.5.16 | clear display and planes, 3.4.3.2 |
table, 23.7.17 | selection, 3.2.4 |
display, 16.2.1 | planes, 3.4.3.2 |
tables, 20.2 | click, 3.1.16, 5.8, 5.9 |
2D, 16.5 | clip, 5.2.9, 5.10.1, 23.3.10 |
3D, 16.5 | clipboard, 5.12.2, 20.7.2 |
append, 16.3.7 | clipping, 23.3.18 |
clustering, 17.12, 17.12.1 | planes, 3.1.3, 5 |
convert, 3.4.16.1, 4.2.1, 4.2.2, 15.1, 16.5, 16.5.1, 16.5.2, 16.5.3, 23.5.1 | tool, 5.10 |
display.fit, 23.7.19 | tools, 5.10 |
draw, 16.3.1, 22.5.1 | closed cavities, 3.4.6.5, 3.4.7.4, 14.5 |
duplicates, 16.2.18 | cluster, 18.4.6, 20.7 |
edit, 16.3.8, 22.5.2 | representative.center, 17.12.2 |
editor, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 | clustering, 20.6.4 |
load, 16.1, 16.1.1 | collada, 3.5.5, 5.2.4 |
merge, 17.15 | color, 3.4.6.2, 5.3, 5.3.1, 5.5.2, 5.5.3, 14.2, 16.2.33, 17.4, 20.1.34, 20.7.3, 22.3.3, 23.3.4, 23.3.5, 23.3.15, 23.3.19 |
name, 16.8 | alignment, 9.5.5 |
new, 16.3.1 | background, 5.3.2 |
properties, 16.2.17 | by, 5.3 |
query, 16.3.2, 16.9.1, 16.9.3 | chemical, 16.2.33 |
read, 16.1, 16.1.1 | display mesh, 5.2.8 |
redo, 16.3.12 | faq, 23.3.19 |
save, 16.3.7, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 | table, 16.2.24 |
search, 16.3.2, 16.9, 16.9.1, 16.9.3, 22.5.4, 22.5.5 | 2D sketch, 16.10.5 |
similarity, 16.3.2, 16.9, 16.9.1, 16.9.3, 22.5.4, 22.5.5 | background, 3.4.3.18, 5.3.2 |
smiles, 16.1.2 | distance, 5.5.11 |
spreadsheet, 16.2, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 | mesh, 5.2.8 |
structure, 16.1.1, 16.3.7, 16.3.8 | table, 16.2.24 |
substructure, 22.5.5 | coloring, 5.3.1 |
superimpose, 17.18.1, 17.18.2, 17.18.3 | column, 20, 20.1.20, 20.1.30, 20.1.31, 20.4, 20.4.1, 23.7.12 |
superposition, 17.18.4, 17.18.5 | row width, 20.1.20 |
table, 16.2, 20.2, 22.5.1, 22.5.2 | statistics, 20.1.24 |
undo, 16.3.12 | color, 20.1.8 |
cheminformatics, 16.2, 23.7 | hide, 16.2.6 |
chemistry, 17.10, 23.7 | show, 16.2.6 |
convert, 17.6 | combinatorial chemistry, 17.17 |
2dto3d, 17.6.1 | library, 17.17.4 |
menu, 17 | combine, 3.4.10.5 |
pca, 17.13 | display style, 3.4.1.15.9 |
line, 23.3.31 | structure, 16.3.10 |
commands, 3.4.1.1.5, 23.9.1 | row, 20.1.27 |
compare, 16.2.27, 17.14, 17.15 | selection to table, 20.1.28 |
table, 16.2.19 | chemical, 16.2.14 |
tables, 17.14 | cpk, 5.1.6, 23.3.20 |
compatible, 3.4.1.9 | crash, 3.4.2.11 |
compound, 17.10, 20.2 | creat, 6.6.1 |
compounds, 23.7.3 | create, 20.1.1 |
compress, 3.4.1.15.6 | modify markush, 17.17.1 |
conditions, 16.9.2 | cross, 23.3.9 |
gen, 17.9 | section, 5.10 |
conformation, 17.9, 18.2.2 | crystal, 3.4.5.2, 12.2 |
conformations, 23.8.2 | crystallographic analysis, 12 |
conformers, 17.9 | biomolecule, 12.3 |
connect, 5.2.7, 5.9, 5.9.7 | contour map, 12.6 |
object, 5.9.7 | convert2grid, 12.7 |
connectivity, 16.3.2, 16.9.1 | crystallographic cell, 12.2 |
consensus, 3.4.7.1 | load eds, 12.4 |
conservation, 22.3.3 | maps cell, 12.5 |
construct, 3.4.1.1, 3.4.1.1.1, 6.1.1 | symmetry packing, 12.1 |
DNA, 3.4.1.1.3 | tools, 22.3.7 |
RNA, 3.4.1.1.3 | cell, 3.4.5.2 |
chemical, 3.4.1.1.2 | cell, 3.4.5 |
compound, 3.4.1.1.2 | neigbor, 3.4.5.1, 12.1 |
molecule, 3.4.1.1 | neighbors, 3.4.5 |
nucleic, 3.4.1.1.4 | crystallography, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7, 23.3.26, 23.3.27 |
object, 3.4.1.1 | csv, 20.1.2, 20.1.3, 20.1.19 |
protein, 3.4.1.1.4 | current, 23.3.21 |
sequence, 3.4.1.1.4 | slide, 7.5 |
contact, 3.4.7.3, 10, 10.3 | custom, 5.9, 16.2.1, 17.18 |
areas, 3.4.7.3 | actions, 20.1.31 |
contour, 3.4.5.6, 3.4.5.7, 12.6, 12.7 | fragments, 17.3 |
map, 3.4.5.6 | label, 5.5.9 |
convert, 4.2, 17.6.1, 17.6.5, 23.7.10 | rotation, 5.9.2 |
2D to 3D.conformer generator, 22.5.11 | cut, 20.1.26 |
from table, 22.5.10 | vertical alignment block, 9.2.11 |
molecule editor, 22.5.9 | damaged skin, 23.10.3 |
chemical, 16.2.21 | dash, 23.3.11 |
2D 3D, 16.5 | data, 4.1.1 |
local database, 3.4.1.5 | database, 9.3, 16.13, 17.17.3, 18.1.2, 18.4.3, 18.4.5, 21.1 |
pdb chem, 16.5.1 | file format, 18.4.3 |
smiles to 2D, 23.7.17 | seach and alignment, 9.3 |
local.database, 3.4.1.5 | databases, 23.7.3 |
smiles, 17.6, 17.6.3, 17.6.4 | decompose.library, 17.17.6 |
convert2grid, 3.4.5.7 | decomposition, 17.17.3, 17.17.5 |
converting pdb, 4.2 | default, 3.1.17 |
copy, 16.2.22, 16.3.13, 16.10.2, 20.1.26 | delete, 3.2.4, 3.4.2.1, 6.6.7, 23.5.9 |
cell, 20.1.27 | column row, 20.1.29 |
chemical, 16.2.22 | label, 5.5.10 |
paste row, 20.1.26 | all, 3.4.2.2 |
column, 20.1.29 | molecule, 16.2.21 |
distance.label, 5.6.4 | origin, 5.5.12 |
label, 5.5.10 | potential, 3.4.3.21 |
row, 20.1.29 | representations, 3.5.1, 5.1.1 |
selection, 3.4.2.1 | restraints, 5.5.14 |
tether, 3.4.16.5, 15.5 | ribbon, 5.1.4 |
deleteall, 3.4.2.2 | skin, 5.1.5 |
density, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7, 23.3.26, 23.3.27 | status, 23.3.31 |
depth, 5.2.11 | surface, 5.1.7, 5.2.1 |
deselect, 23.3.7 | surfaces, 3.5.5 |
deviation, 23.5.7 | table, 16.2.1 |
dialog, 6.6.5 | tethers, 5.5.13 |
diffuse, 3.5.2 | wire, 5.1.2 |
dihedral, 3.4.7.8, 5.5.5, 10.8, 23.3.17 | xstick, 5.1.3 |
angle, 10 | distance, 3.4.7.6, 5.5.11, 5.6, 10, 10.6, 17.14, 23.3.11, 23.5.8, 23.5.10 |
dimensional, 23.7.11 | faq, 23.5.10 |
directories preferences, 3.4.1.15.2 | label, 3.4.1.15.7 |
directory, 3.4.1.15 | distances, 3.5.3 |
disappearing labels, 23.10.3 | disulfide, 13.9 |
display, 3.1.7, 3.1.18, 3.4.1.15, 4.4, 5.5.15, 5.11, 16.2.25, 17.11, 22.1.5, 22.3.4, 22.3.6, 23.3.4, 23.3.5, 23.3.8, 23.3.9, 23.3.10, 23.3.16, 23.3.20, 23.3.29, 23.3.31, 23.5.10, 23.5.11, 23.5.20, 23.7.9 | diverse set, 20.6.4 |
chemical, 16.2.25 | dock, 18, 18.1, 18.1.2, 18.5, 22.8.1, 22.8.2, 22.9.1, 23.6.3, 23.6.4, 23.6.5, 23.6.6, 23.6.8, 23.6.9, 23.6.11, 23.6.12, 23.6.13, 23.6.14, 23.6.15, 23.6.16, 23.6.17, 23.6.22 |
delete distances, 5.6.4 | command, 23.6.17 |
dihedral, 5.6.3 | macrocylce, 23.6.21 |
distance restraints, 5.5.14 | docking, 3.4.6.4, 14.4, 18, 18.1.3, 18.1.15, 18.2, 18.2.1, 18.2.2, 18.4, 18.4.1, 18.4.2, 18.4.5, 18.6, 18.6.1, 18.6.2, 18.6.3, 18.6.4, 18.6.5, 18.6.7, 18.6.8, 18.6.9, 22.7, 22.7.1, 22.7.2, 22.8.3, 22.9, 22.9.2, 23.6, 23.6.1, 23.6.10, 23.6.18, 23.6.19 |
distance2, 5.6.1 | explicit group, 22.9.2 |
angles, 5.6 | docking explicit, 22.9.2.5 |
formal charge, 5.1.10 | project, 22.9.2.3 |
gradient, 5.5.17 | receptor setup, 22.9.2.1 |
hbonds, 18.4.9.5 | rotate hydroxyls, 22.9.2.2 |
hydrogen, 5.1.8 | run docking, 22.9.2.4 |
mesh, 5.2.2 | start, 18.1.3 |
meshes, 5.2.5 | template, 18.3 |
planar angle, 5.6.2 | adjust, 18.1.6 |
structure, 3.1.8 | background, 23.6.20 |
tab, 3.5.1, 23.3.15 | batch, 18.1.10 |
tether, 5.5.13 | binding, 18.1.6 |
toggle, 5.5.16 | conformations, 23.6.21 |
CPK, 5.1.6 | flexible.rings, 23.6.21 |
angle, 5.6.2 | hitlist, 18.1.14 |
chemical, 16.2.1 | interactive, 18.1.9 |
dihedral.angle, 5.6.3 | maps, 18.1.7 |
distace, 5.5.11 | preparation, 18.1.3 |
distance, 5.5.14, 5.6.1 | procedure, 18.1.8 |
electrostatic, 3.4.3.21 | project name, 18.1.4 |
energy.gradient, 5.5.17 | rank, 18.1.14 |
hydrogen, 5.1.8 | receptor setup, 18.1.5 |
polar, 5.1.8 | results, 18.1.11, 18.1.12, 18.1.13, 18.1.14 |
macroshape, 5.2.3 | sampling, 23.6.21 |
meshes, 5.2.2 | score, 18.1.14 |
and display.macroshape, 3.5.5 | stack, 18.1.13 |
document, 3.4.1.1.6, 6.6.4, 6.6.5 | elegant sketch, 5.7.4 |
navigation, 6.6.6 | element, 16.3.6 |
documents, 5.12.4 | embed browser, 7.3 |
dollar, 23.9.3 | powerpoint03, 7.1 |
donator, 16.3.5 | powerpoint07, 7.2 |
envelope, 3.5.1, 5.1.1 | activeicm, 7.5 |
surface, 3.4.1.15.5 | script, 7.5 |
dots, 3.1.10 | browser, 7, 7.3 |
dotted lines, 3.1.10, 23.3.33 | firefox, 7, 7.3 |
double, 16.3.6 | internet.explorer, 7, 7.3 |
download, 23.7.3 | microsoft, 7 |
drag, 3.1.15, 3.3.6, 3.4.1.15.7, 5.5.3, 6.6.4, 9.4.5, 23.5.5 | powerpoint, 7, 7.1, 7.2 |
and drop sequences, 9.4.5 | enantiomer, 23.6.22 |
residue label, 3.4.3.16 | energy, 3.4.6.2, 5.5.15, 14.2, 18.1.13, 23.6.1, 23.6.2, 23.8.2 |
draganddrop, 3.1.15 | terms, 3.4.16.12, 15.12 |
draw, 16.3.13, 17.17.7, 23.7.7 | enumerate.reaction, 17.17.8 |
chemical, 16.3.1 | enumeration, 17.17.3 |
drop, 3.1.15, 3.3.6, 6.6.4, 9.4.5, 23.5.5 | eps, 16.6.4 |
drug, 17.1, 23.7.12, 23.7.14 | epsilon, 23.5.15 |
druglikeness, 16.3.5 | errno, 23.1.2 |
dsPocket, 3.1.12 | error, 23.1.2, 23.3.34 |
easy rotate, 3.4.3.12 | escaping, 3.1.3 |
edit, 23.7.8 | exact, 17.14 |
alignment, 9.5.1 | excel, 16.7 |
chemical, 16.3.8 | exclude fragment, 16.9.2 |
moledit, 16.2.23 | exit, 3.4.1.18 |
ligand, 19.5 | explicit, 16.2.26, 18.2.1 |
editor preferences, 19.2 | flex, 18.2.1 |
tools, 3.4.2.17 | groups, 22.9.2 |
menu, 3.4.2 | export, 3.4.7.9, 10.10 |
molecular document, 6.6.1 | excel, 16.7 |
molecule, 16.3 | extract, 3.3.4, 9.1, 22.3.5, 23.5.12, 23.7.13 |
molt, 21.3 | icb, 3.4.1.4 |
movie, 8.2.7 | sub alignment, 9.2.10 |
selection, 3.4.2.5 | 2D chemical sketch, 16.4 |
slide, 6.4.1 | icb, 3.4.1.4 |
table row, 20.1.22 | phrarmacophore, 16.10.4 |
molecule, 16.2.23 | faq, 23, 23.2, 23.3, 23.3.12, 23.5, 23.6, 23.8, 23.9, 23.9.2 |
movie, 8.2.7 | ISISdraw, 23.7.8 |
structure, 16.2.23 | activeicm, 23.4 |
editor, 22.3.5, 23.5.12 | path, 23.4.3 |
editpdbsearch, 3.4.2.12 | apf model, 23.7.18 |
eds, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7 | atom charge, 23.5.21 |
electron, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7, 23.3.26, 23.3.27 | display, 23.3.16 |
denisty map, 3.4.5.5, 12.5 | autosave, 23.3.32 |
densitry map.contour, 3.4.5 | backbone, 23.3.12 |
map, 3.4.1.6, 3.4.5, 18.5 | background color, 23.3.2 |
electrostatic potential, 3.4.3.21 | job, 23.6.20 |
surface, 5.2 | beep, 23.3.34 |
electrostatics, 5.2.1, 18.6.7 | binding energy, 23.6.2 |
breaks, 23.3.33 | movie planes, 23.3.18 |
change torsion, 23.5.16 | newscript, 23.9.1 |
chem table display, 23.7.9 | nmr, 23.5.18 |
chemical monitor, 23.7.15 | nvidia error, 23.1.1 |
query2, 23.7.5 | origin, 23.3.9 |
cheminformatics, 23.7 | pmf score, 23.6.7 |
clipping plane, 23.3.10 | pockets, 23.3.13 |
closest, 23.5.22 | preserve coordinates, 23.7.11 |
color carbon, 23.3.4 | quad buffer, 23.2.3 |
skin, 23.3.15 | receptor selection, 23.6.15 |
command line display, 23.3.31 | reload dock, 23.6.5 |
convert chemical from pdb, 23.5.1 | remove salt, 23.7.20 |
covalent bond, 23.5.2 | select, 23.3.6 |
delete, 23.5.9 | renumber, 23.5.4 |
deselect, 23.3.7 | residue number selection, 23.3.35 |
dihedral, 23.3.17 | ringflex dock, 23.6.3 |
dock charge groups, 23.6.23 | rmsd, 23.5.7 |
probe, 23.6.14 | rmsdtips, 23.5.8 |
racemic, 23.6.22 | rocking active ppt, 23.4.1 |
repeat, 23.6.6 | speed, 23.4.2 |
working directory, 23.6.24 | rotate chemical, 23.7.19 |
docking, 23.6 | scanScoreExternal, 23.6.18 |
docktime, 23.6.12 | scanScoreExternal2, 23.6.19 |
dollar, 23.9.3 | score, 23.6.9 |
druglikeness, 23.7.14 | script, 23.9 |
energy, 23.6.1 | simulations, 23.8 |
error admin, 23.10.1 | smiles, 23.7.17 |
extract ligand, 23.7.13 | solvent accessible surface table, 23.5.19 |
flexible dock, 23.6.16 | ss, 23.5.17 |
ring docking, 23.6.21 | structure, 23.5 |
font size, 23.3.1 | superimpose, 23.5.6 |
foreground table, 23.9.4 | thoroughness, 23.6.13 |
gl failure, 23.10.2 | transparent ribbon, 23.3.3 |
gui, 23.3 | truncate mesh, 23.3.14 |
guided dock, 23.6.4 | view stack, 23.8.2 |
hardware, 23.2 | weak hydrogen bonds, 23.5.20 |
hitlist, 23.6.8 | write pdb, 23.5.3 |
iSee, 23.3.29 | faqcontour, 23.3.27 |
icmPocketFinder, 23.6.11 | faqhbondstrength, 23.3.28 |
insert column, 23.7.12 | faqmaps, 23.3.26 |
installation, 23.1 | faqoda, 23.3.25 |
interactions, 23.3.11 | faqstereo, 23.10.5 |
ligandbox, 23.6.10 | fasta, 3.3, 3.3.2 |
merge, 23.5.5 | field, 4.1.1.4 |
molcart 64bit, 23.1.2 | file, 3.4.1.2, 4.1.4 |
query, 23.7.6 | close, 3.4.1.12 |
sdf, 23.7.4 | compatible, 3.4.1.9 |
text search, 23.7.16 | export, 3.4.1.11 |
molecule c, 23.3.5 | load, 3.4.1.6 |
moledit, 23.7.7 | menu, 3.4.1 |
quick image, 3.4.1.13 | tutorial, 22.1 |
icb, 3.1.14 | 2D3D labels, 22.1.4 |
recent, 3.4.1.16 | annotation, 22.1.2 |
bak, 3.4.2.11 | color representation, 22.1.1 |
filter, 21.2, 23.3.4 | labels, 22.1.3 |
selection, 3.2.6 | user interface, 23.3 |
tut, 22.1.9 | card, 23.1.1 |
find, 3.4.7.1 | controls, 5 |
chemical, 16.2.30 | defects, 23.10.3 |
related chains, 3.4.7.1 | effects, 5.7 |
finding dihedral angle, 3.4.7.8 | preferences, 3.4.1.15.3 |
planar angle, 3.4.7.7 | tips, 3.1.3 |
fingerprint, 23.7.5, 23.7.6 | shadow, 3.4.3.13, 5.7.2 |
firefox, 23.4 | grid, 16.2.1, 16.2.4, 17.18, 22.9.1, 23.7.9 |
fit, 16.2.32, 18.5, 23.6.16 | grob, 3.4.1.15.5, 3.4.5.4, 3.4.5.6, 3.4.5.7, 5.2, 12.4, 12.6, 12.7 |
fitting, 18.5, 20.4.12 | group, 17.17.5, 19.7 |
flex super, 17.18.3 | groups, 16.12, 17.1, 17.2 |
flexibility, 3.4.6.3, 14.3, 22.9 | guanidinium, 17.5 |
flexible, 17.18, 18.2, 18.2.1, 18.2.2, 22.9.1, 23.6.16 | gui, 3.4.1.15.4 |
rings, 23.6.3 | menus, 3.4 |
fog, 3.4.3.5, 5, 5.7.1 | preferences, 3.4.1.15.4 |
font, 3.4.1.15, 3.4.1.15.7, 5.5.2, 5.5.3, 16.2.26, 20.1.31, 20.7.3 | tabs, 3.5 |
preferences, 3.4.1.15.7 | guided docking, 23.6.4 |
size, 9.5, 23.3.1 | h-bond, 4.4, 22.3.6, 23.3.11 |
form, 16.2.4 | hardware, 23.2 |
view, 20.1.5 | stereo, 3.4.3.7 |
formal, 23.5.21 | hbond, 23.3.28 |
charge, 5.1.10, 17.5 | strength, 23.3.28 |
format, 20.1.2, 20.1.31 | header, 4.1.8, 20.4.5 |
formula, 16.3.5, 17.1 | health, 3.4.6.2, 14.2, 22.4.5 |
fragment, 16.2.33, 17.17.5 | helices strands, 3.4.6.1 |
fragments, 16.12 | helix, 23.3.19 |
frame, 9.2.3 | hetero, 16.2.26 |
frequency, 16.2.33 | hidden block format, 9.5.8 |
front, 5.2.9, 5.10.1 | width, 9.5.8 |
full scene antialias, 3.4.3.10 | hide, 20.1.30 |
screen, 3.4.3.8 | high, 3.4.1.14 |
function, 20.1.23, 20.1.24 | quality, 3.4.3.11 |
functional.groups, 17.3 | his, 23.5.15 |
general preferences, 3.4.1.15.5 | histidine, 3.4.16.2, 15.2, 23.5.15 |
generalselecttools, 3.2.2 | tautomer, 23.5.15 |
generator, 3.4.5.3, 12.3, 17.9 | histogram, 18.4.9.2, 18.4.9.3, 20.4, 20.4.1, 20.4.5, 20.4.7, 20.4.9, 20.4.10, 20.4.11, 20.4.12, 20.4.13, 20.4.14, 20.4.15, 20.4.17, 22.1.12, 22.1.13 |
getting started, 3 | bins, 20.4.3 |
glasses, 23.2.2, 23.10.5 | options, 20.4.2 |
glutamine proline, 3.4.16.2, 15.2 | bin.size, 20.4.2 |
google, 3.4.1.6 | bins, 20.4.3 |
objects, 5.2.4 | color, 20.4.2 |
3D, 3.5.5, 5.2.4 | source, 20.4.2 |
graphical, 1, 23.3.4 | style, 20.4.2 |
display, 4.2.1, 4.2.2, 16.5.2, 16.5.3 | title, 20.4.2 |
homology, 3.4.7.1, 13, 13.1, 13.2, 13.4.1, 13.6, 13.7, 22.4, 22.4.1 | histogram, 22.1.13 |
loops, 13.5 | mark row, 16.2.12 |
model introduction, 13.1 | markush, 17.17.4 |
start, 13.2 | structure, 17.17.2 |
modeling, 22.4.2 | merge tables, 16.2.20 |
3D editor, 22.6 | plot, 22.1.14 |
add substituent, 22.6.13 | plots, 22.1.12 |
begin edit, 22.6.11 | properties, 16.2.17 |
center ligand, 22.6.10 | qsar, 22.5.12 |
default, 22.6.4 | build model, 22.5.13 |
dock, 22.6.20 | predict, 22.5.14 |
tether, 22.6.21 | reactions, 17.17.8 |
edit 2d, 22.6.15 | reorder, 17.12.3 |
energy circles, 22.6.7 | sdf, 16.2.7 |
hydrogen, 22.6.8 | show hide, 16.2.6 |
fragment linkers, 22.6.23 | smiles, 16.3.11 |
hydrogen bond, 22.6.6 | sort column, 16.2.3 |
minimization, 22.6.19 | standardize, 16.2.16 |
multiple substituent, 22.6.14 | table hyperlinks, 16.2.13 |
preferences, 22.6.3 | print, 16.2.9 |
purple box, 22.6.18 | activeicm, 2.3 |
save spreadsheet, 22.6.17 | create molecular documents, 2.3.3 |
screen substituents, 22.6.22 | slides, 2.3.2 |
setup ligand, 22.6.1 | getting started, 2.3.1 |
receptor, 22.6.2 | ppt, 2.3.4 |
surface, 22.6.5 | web, 2.3.5 |
undo redo, 22.6.12 | chemical clusering, 17.12.1 |
unsatisfied hydrogen bonds, 22.6.9 | display, 3.1 |
add columns, 16.2.2 | icm browser convert display pocket, 2.1.4 |
change view, 16.2.4 | distances angles, 2.1.9 |
chemical 2D 3D, 22.5.8 | get started, 2.1.1 |
conformer generator, 22.5.11 | graphical display, 2.1.2 |
from table, 22.5.10 | effects, 2.1.5 |
molecule editor, 22.5.9 | images, 2.1.7 |
superimpose, 22.5.15 | labels annotation, 2.1.6 |
apf, 22.5.17 | pro crystallographic tools, 2.2.6 |
rigid flexible, 22.5.16 | get started, 2.2.1 |
cluster center, 17.12.2 | graphics, 2.2.2 |
color 2D by ph4, 16.10.5 | plots, 2.2.8 |
copy 2D, 16.2.14 | sequence analysis, 2.2.7 |
paste, 16.2.5 | structure analysis, 2.2.3 |
decompose, 17.17.6 | superimpose, 2.2.5 |
duplicate chemicals, 16.2.18 | surfaces, 2.2.4 |
edit table, 16.2.15 | selections, 2.1.3 |
tree, 17.12.4 | superimpose, 2.1.8 |
excel, 16.2.8 | hrydrogen.bond, 23.3.28 |
extract 2D, 16.4 | html, 3.4.1.1.6, 3.4.1.11, 6.6.1, 6.6.6, 23.4 |
3D ph4, 16.10.4 | html-doc font size, 23.3.1 |
filter, 16.2.10 | hybridization, 16.3.2, 16.9.1 |
find replace, 16.2.11 | hydrogen, 4.4, 5.1.9, 16.3.2, 16.9.1, 22.3.6, 23.3.11, 23.7.12, 23.7.15 |
bond, 16.3.5, 23.5.20 | modeling, 13.4, 13.4.1 |
hydrogens, 16.2.26 | modeling, 13.4 |
remove, 16.2.16 | interface, 1 |
hyperlink, 6.6.1, 6.6.2, 20.1.31 | internet explorer, 23.4 |
iSee, 3.1.14, 3.4.1.1.6, 3.4.1.4, 3.4.1.11, 5.12.4, 22.1.11, 23.3.29, 23.3.30, 23.4.3 | interrupt, 6.1.3 |
icb, 23.3.29, 23.4.3 | animation, 6.1.3 |
icm, 23.4.3 | introduction, 1 |
chemist howto chemical search, 2.4.3 | invert selection, 20.1.21 |
cluster, 2.4.5 | invisible residue label, 23.10.3 |
combi library, 2.4.7 | isee, 6.6.5 |
ph4, 2.4.4 | isis, 16.3.13 |
plots, 2.4.8 | isotope, 16.3.2, 16.9.1 |
sketch, 2.4.1 | iupac, 16.8 |
spreadsheets, 2.4.2 | job, 23.6.20 |
stereoisomers tautomers, 2.4.6 | jobs, 18.4.6 |
pro 3D ligand editor, 2.5.1 | join, 17.15 |
chem3D, 2.5.2 | jpg, 5.12, 5.12.1 |
chemsuper, 2.5.3 | means, 20.7 |
qsar, 2.5.4 | key chemical, 16.3.6 |
tutorials, 2.5 | keyboard mouse, 5.8 |
tutorials, 2.4 | keystokes in chem-edit, 16.3.6 |
hanging, 23.10.4 | kinase build model, 22.4.2.3 |
script, 20.1.31 | model loop, 22.4.2.4 |
icm-crash, 23.10.4 | kinasemod, 22.4.2 |
icmFastAlignment, 9.3 | search, 22.4.2.1 |
icmPocketFinder, 3.4.6.5, 14.5, 23.3.13, 23.6.11 | sequence alignment, 22.4.2.2 |
image, 3.1.19, 3.4.1.15, 3.4.1.15.5, 5.12.1, 5.12.2, 5.12.3, 5.12.4, 6.6.3, 16.6, 16.6.4, 20.4.16 | kmz, 3.5.5, 5.2.4 |
advanced, 5.12.3 | label, 3.4.1.15.7, 20.7.3, 23.3.16 |
clipboard, 5.12.2 | annotation, 5.5.7 |
preferences, 3.4.1.15.6 | atoms, 5.5.2 |
multiple, 3.4.1.6 | color, 5.5.8 |
quality, 3.4.3.11 | move, 5.5.4 |
quick, 3.4.1.13 | residues, 5.5.3 |
images, 5.12 | sites, 5.5.6 |
in-a-window, 23.2.3 | variables, 5.5.5 |
index, 23.7.16 | 2D, 3.5.3 |
induced, 23.6.16 | 3D, 3.5.3, 5.5.1 |
fit, 18.2, 18.2.1, 22.9, 22.9.1 | annotation, 5.5.7 |
insert, 6.6.4 | atom, 5.5.1 |
column, 20.1.23 | atoms, 5.5.2 |
image, 6.6.3 | color, 5.5.8 |
row, 20.1.25 | custom, 5.5.9 |
script, 6.6.4 | delete, 5.5.1, 5.5.10 |
install, 1, 16.13.1, 23.1.2, 23.1.3 | distance, 5.5.11 |
installation, 23.1 | drag, 3.4.3.16 |
interactio, 23.6.2 | move, 3.4.3.16, 5.5.4 |
interaction, 3.4.7.3, 10.3, 23.3.11 | residue, 5.5.1 |
interactive, 18.1.9, 22.1.11 | residues, 5.5.3 |
loop, 13.4.3 | site, 5.5.1 |
make, 13.4.1 | sites, 5.5.6 |
variables, 5.5.5, 23.3.17 | linux, 16.13.1 |
labeling, 5.5.1 | load, 3.3, 3.3.2, 3.4.1.2, 3.4.1.16, 3.4.5.4, 3.4.5.6, 3.4.5.7, 4.1.4, 9.1, 12.4, 12.6, 12.7 |
labels, 5.5, 16.2.26 | eds, 3.4.5.4 |
distances, 5.5.11 | example alignment, 9.2.14 |
tab, 3.5.3 | nmr model, 4.1.5 |
landscape, 3.4.1.15.6 | pdb, 4.1.4 |
lasso, 22.1.6, 22.1.7 | hyperlinks, 4.1.7 |
layer, 5.11 | sequence, 9.1 |
layers, 5.11 | extract pdb, 9.1.3 |
learn, 17.7, 17.8, 20.6, 20.6.1, 23.7.18 | from file, 9.1.4 |
learning, 20.6 | paste, 9.1.2 |
theory, 20.6.3 | swissprot, 9.1.1 |
least.squares, 20.4.12 | libraries, 3.4.16.6, 15.6 |
library, 17.17.3 | pdb, 4.1.3 |
reaction, 17.17.8 | sequence, 3.3.1 |
license, 23.1.3 | local, 23.3.23, 23.3.24 |
ligand, 18.1.2, 18.2, 18.6.5, 18.6.6, 22.3.4, 23.5.5, 23.5.11, 23.6.2, 23.6.10, 23.7.13 | databases, 21 |
best replace, 19.7 | flexibility, 3.4.6.3 |
code, 4.1.1.3 | database.browse, 21.2 |
editor, 19 | edit, 21.3 |
preferences, 3.4.2.18 | query, 21.4 |
linker, 19.6 | row, 21.3 |
pocket, 23.5.11 | localpdb, 23.3.23 |
tether, 19.8 | localseq, 23.3.24 |
convert, 3.4.16.1, 15.1 | lock, 5.2.9, 5.10.1, 16.2.29 |
editor, 19, 19.1, 19.6 | log, 20.4.7 |
binding.re-dock ligand, 19.4 | logP, 16.3.5, 17.1 |
display, 19.3 | logS, 16.3.5, 17.1 |
edit, 19.5 | logarithmic, 20.4.7 |
energy, 19.3 | logout, 3.4.1.18 |
hydrogen.bond, 19.3 | loop, 13.6, 23.3.19 |
pocket, 19.3 | model, 13.6 |
preferences, 19.2 | modeling, 13.4.3 |
restraint, 19.8 | model, 3.4.16.8, 15.8 |
surface, 19.3 | sample, 3.4.16.8, 15.8 |
tether, 19.8 | mac, 16.13.1 |
optimization, 22.8.3 | macros, 7.6 |
pocket, 3.1.12 | macroshape, 3.4.3.22, 5.2, 5.2.3 |
receptor.contact, 3.4.7.3, 10.3 | make, 3.4.1.1.1, 3.4.1.1.7, 6.1.1, 20.1.1 |
surface, 22.6.5 | animation, 6.1.1 |
light, 3.5.2 | complex, 18.4.9.5 |
tab, 3.5.2 | flat, 23.7.19 |
lighting, 5.4 | images, 5.12 |
likeness, 17.1, 23.7.14 | molecular document, 6.6 |
line, 3.4.1.15.5, 20.7.3, 23.3.11 | molt, 21.1 |
lineWidth, 3.4.1.15.3 | movie, 8.2 |
link, 9.2.9, 22.3.3 | receptor maps, 18.1.7 |
structure to alignment, 22.2 | selection, 3.2 |
linker, 19.6 | DNA, 3.4.1.1.3 |
links, 3.2.15 | RNA, 3.4.1.1.3 |
chemical, 3.4.1.1.2 | loop, 13.5 |
compound, 3.4.1.1.2 | modelers view, 13.4.2 |
disulfide, 13.9, 23.5.17 | view, 13.4.2 |
molecule, 3.4.1.1 | modeling, 3.4.16.3, 15.3 |
object, 3.4.1.1 | modeller view, 13.4 |
sequence, 3.4.1.1.4 | mol, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4, 22.8.2 |
making molecular slides, 6.2 | mol2, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 |
html, 6.6 | molcart, 16.13, 16.13.1, 16.13.2, 16.13.3, 16.13.4, 21, 23.1.2, 23.7, 23.7.3, 23.7.4, 23.7.5, 23.7.6, 23.7.16 |
color, 20.4.10 | administration, 16.13.4 |
map, 3.4.1.15.7, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7 | connect, 23.7.2 |
cel, 3.4.5.5, 12.5 | download dbs, 23.7.3 |
maps, 18.6.7, 22.9.1, 23.3.26, 23.3.27, 23.6.10 | hostid, 23.7.1 |
cell, 3.4.5.5 | installation, 16.13.1 |
mark, 20.1.34 | license, 23.1.3 |
row, 20.1.34 | search, 16.13.3 |
shape, 20.4.9 | start, 16.13.2 |
size, 20.4.9 | connect, 23.7.2 |
markush, 17.17.1, 17.17.5, 22.8.3 | hostid, 23.7.1 |
docking, 22.8.3 | license, 23.7.1 |
library, 17.17.4 | molclart, 23.1.3 |
mass, 23.5.22 | molecular, 16.2.28, 16.2.29, 16.2.32, 16.2.33, 17.9, 23.7.12, 23.7.15 |
materials, 3.5.5 | animations slides, 6 |
max, 20.7 | transitions, 6.1 |
maxColorPotential, 3.4.1.15.10 | document, 3.4.1.1.6 |
mean, 23.5.7 | documents, 22.1.11 |
menu, 6.6.5 | editor, 23.7.7 |
chemistry, 3.4.14 | copy, 16.3.10 |
docking, 3.4.15 | cut, 16.3.10 |
homology, 3.4.13 | paste, 16.3.10 |
molmechanics, 3.4.16 | redo, 16.3.12 |
tools chemical search, 3.4.11 | selections, 16.3.9 |
molecular editor, 3.4.12 | undo, 16.3.12 |
windows, 3.4.17 | graphics, 5 |
merge, 17.15, 23.5.5 | molecule representation, 5.1 |
two sets, 17.15 | mechanics, 15 |
mesh, 3.4.5.4, 3.4.5.6, 3.4.5.7, 4.3, 5.2, 5.2.7, 5.2.9, 5.2.10, 5.2.11, 5.10.1, 12.4, 12.6, 12.7 | convert, 15.1 |
clip, 5.2.9 | edit structure, 15.5 |
options, 5.2.6 | gamess, 15.11 |
save, 5.2.10 | generate normal mode stack, 15.9 |
options, 5.2.6 | his asn, 15.2 |
meshes surfaces grobs, 5.2 | impose conformation, 15.4 |
tab, 3.5.5 | minimize, 15.7 |
min, 20.7 | mmff, 15.6 |
minimize.cartesian, 3.4.16.7, 15.7 | regularization, 15.3 |
global, 3.4.16.7, 15.7 | sample loop, 15.8 |
local, 3.4.16.7, 15.7 | terms, 15.12 |
mmff, 3.4.16.6, 15.6, 23.3.16, 23.7.10 | view stack, 15.10 |
type, 5.5.2 | modeling, 13 |
mnSolutions, 3.4.1.15.10 | table, 17.6.2 |
model, 13, 13.1, 13.2, 13.3, 13.6, 13.7, 22.4, 22.4.1 | weight, 16.3.5 |
editor, 16.3 | scene, 8.2.2 |
molecules, 3.4.7.1 | still, 8.2.3 |
moledit, 16.3.4 | tween, 8.2.4 |
molmech icmconv, 3.4.16.1 | mpeg, 8, 8.1 |
molmechaincs gamess, 3.4.16.11 | mpg, 8 |
molmechanics, 23.8.2 | multi apf super, 17.18.5 |
edit structure, 3.4.16.5 | multiple, 18.2.2, 22.9.1 |
generate normal mode stack, 3.4.16.9 | rec, 18.2.2 |
his asn, 3.4.16.2 | receptor, 22.9 |
impose conformation, 3.4.16.4 | protein, 23.3.5 |
minimize, 3.4.16.7 | mutant, 23.5.13, 23.5.14 |
mmff, 3.4.16.6 | mutate, 23.5.15 |
regularization, 3.4.16.3 | residue, 23.5.13 |
sample loop, 3.4.16.8 | N C, 23.5.14 |
terms, 3.4.16.12 | residue, 22.4.4 |
view stack, 3.4.16.10 | mutation, 23.5.13, 23.5.14 |
minimize, 3.4.16.7, 15.7 | navigate workspace, 3.2.8 |
mmff, 3.4.16.6, 15.6 | nearest, 23.5.22 |
molt, 21, 21.4 | neighbors, 22.1.8 |
monitor, 23.7.15 | new, 3.3, 3.3.3, 3.4.1.1.1, 9.1 |
monochrome, 16.2.26 | compound, 3.4.1.1.2 |
monte carlo, 22.4.4 | dna, 3.4.1.1.3 |
montecarlo, 23.8.1 | peptide, 3.4.1.1.1 |
mouse, 3.1.2, 5.8, 5.9 | protein, 3.4.1.1.4 |
mov, 8, 8.1 | table, 20.1.1 |
move, 3.1.15, 3.1.17, 3.4.3.19, 5.2.7, 5.9, 5.9.7, 23.5.5 | chemical, 3.4.1.1.2 |
resize mesh, 5.2.7 | compound, 3.4.1.1.2 |
slide, 6.4.2 | dna, 3.4.1.1.3 |
structure, 5.9 | protein, 3.4.1.1.4 |
tools, 5 | rna, 3.4.1.1.3 |
rotate, 5.8 | script, 3.4.1.1.5 |
slab, 5.8 | table, 3.4.1.1.7, 20.1.1 |
translate, 5.8 | nmr, 23.5.18 |
z-rotation, 5.8 | model, 4.1.5 |
zoom, 5.8 | normal modes, 3.4.16.9, 15.9 |
movie, 3.5.6, 8.1, 8.2, 23.3.18, 23.8.1 | notations, 1 |
directory, 8.2.1 | numbers, 16.2.26 |
montecarlo, 23.8.1 | nvidia, 23.1.1 |
scene, 8.2.2 | object, 3.1.15, 3.4.1.8.1, 3.4.1.8.2, 22.3, 23.3.8 |
tab, 3.5.6 | objects, 4.2 |
directory, 8.2.1 | in table, 20.3 |
edit, 8.2.7 | in.table, 20.3 |
export, 8.2.8 | occlusion, 5.2.11 |
making, 8 | shading, 5.2.11 |
open, 8 | occupancy, 22.3.9 |
powerpoint, 8.1 | display, 4.1.6 |
preview, 8.2.8 | oda, 3.4.6.4, 14.4, 18.6, 18.6.1, 18.6.2 |
resolution, 8.2.1 | older version, 3.4.1.9 |
rock, 8.2.6 | omega, 5.5.5, 23.3.17 |
rotate, 8.2.5 | open, 3.4.1.2, 20.1.2 |
movie, 8 | phylogenetic, 9.5.4 |
password, 3.4.1.3 | phylogeny, 9.5.4 |
optimal, 3.4.6.4, 14.4, 18.6, 18.6.1, 18.6.2 | pick, 22.1.6, 22.1.7 |
optimize, 3.4.16.2, 15.2, 22.4.4 | picking, 5 |
origin, 5.5.12, 23.3.9 | atoms, 3.1.3 |
other selection, 3.2.14 | residues, 3.1.3 |
outside, 23.6.10 | picture, 3.1.19, 3.4.1.13, 6.6.3 |
overlay, 23.3.5, 23.5.6 | tips, 3.1.19 |
package.activeicm, 7.5 | planar, 3.4.7.7, 5.5.5, 10.7, 23.3.17 |
packing, 3.4.5.1, 12.1 | angle, 10 |
parallelization, 18.4.7 | angle, 5.6.2 |
password, 16.13.4 | plane, 5.2.9, 5.10, 5.10.1, 5.11, 23.3.10, 23.3.18, 23.3.20 |
paste, 16.3.13, 20.1.26 | faq, 23.3.20 |
pbs, 18.4.6 | plot, 3.4.1.15, 3.4.1.15.8, 18.4.9.2, 20.4, 20.4.1, 20.4.4, 20.4.5, 20.4.7, 20.4.9, 20.4.10, 20.4.11, 20.4.12, 20.4.13, 20.4.14, 20.4.15, 20.4.16, 20.4.17, 22.1.12, 22.1.14 |
pca, 20.5 | axis, 20.4.7 |
pdb, 3.3.4, 3.4.1.6, 4.1.1, 4.1.1.3, 16.5.1, 22.3, 23.3.23, 23.3.24, 23.5.4 | color, 20.4.10 |
chem gl, 16.5.3 | function, 3.4.9, 3.4.9.1 |
iw, 16.5.2 | grid, 20.4.11 |
file, 23.5.3 | header, 20.4.5 |
html, 4.1.8 | inline, 20.4.17 |
preparation, 22.3.10 | logarithmic, 20.4.8 |
search, 4.1 | mark, 20.4.9 |
hyperlinks, 4.1.7 | preferences, 3.4.1.15.8 |
sensitive query, 4.1.2 | regression, 20.4.12 |
convert, 3.4.16.1, 15.1 | selection, 20.4.14 |
recent, 3.4.1.17 | zoom translate, 20.4.13 |
search, 3.1.1, 3.5.4, 4.1.3 | axis, 20.4.11 |
table, 4.1.3 | display, 20.4.11 |
pdbsearchfield, 3.4.2.13 | grid, 20.4.11 |
pdbsearchhomology, 3.4.2.15 | inline, 20.4.17 |
pdbsearchidentity, 3.4.2.14 | logarithmic, 20.4.8 |
pdbsearchresults, 4.1.3 | pls, 17.7, 17.8, 20.6 |
pdbsearcsequence, 3.4.2.16 | pmf, 23.6.7 |
peptides, 3.4.1.1.1 | png, 3.4.1.13, 5.12, 5.12.1, 6.6.3, 16.6, 16.6.4 |
perspective, 3.4.3.9, 5.7.5 | pocket, 3.1.12, 3.4.6.5, 4.3, 14.5, 18.1, 22.3.4, 23.3.13, 23.5.11, 23.6.11 |
ph4, 16.10 | conservation, 23.5.12 |
draw 2d, 16.10.1 | display, 19.3 |
3d, 16.10.2 | peptide, 3.1.12 |
search, 16.10.3 | properties, 3.1.12 |
pharmacophore, 16.2.33, 16.10.5 | surface, 22.6.5 |
2D, 22.5.7 | portait, 3.4.1.15.6 |
3D, 22.5.6 | post screen, 18.4.9 |
clone, 16.10.2 | postscript, 3.4.1.15.6 |
draw2D, 16.10.1 | potential mean force, 18.4.4 |
draw3D, 16.10.2 | powerpoint, 22.1.11, 23.4 |
edit, 16.10.1, 16.10.2 | ppbatch, 18.6.8 |
move, 16.10.2 | ppepitope, 18.6.6 |
new, 16.10.2 | ppmaps, 18.6.7 |
search, 16.10, 16.10.3, 22.5.6, 22.5.7 | pprefine, 18.6.10 |
phi, 5.5.5, 23.3.17 | ppresults, 18.6.9 |
ppsetligand, 18.6.5 | superimpose 3D, 11.3 |
ppsetproject, 18.6.3 | grid, 11.5 |
ppsetreceptor, 18.6.4 | multiple proteins, 11.4 |
ppt, 7.4, 7.6, 23.4.3 | protein-protein, 3.4.6.4, 14.4, 18.6, 18.6.1, 18.6.2, 18.6.3, 18.6.4, 18.6.5, 18.6.7, 18.6.8, 18.6.9 |
predict, 9.2.2, 17.7, 17.8, 20.6, 20.6.2, 23.7.14, 23.7.18 | docking refinement, 18.6.10 |
predicting bioassays, 20.6.2 | protein-proteindocking, 18.6.6 |
compound properties, 20.6.2 | convert, 3.4.16.1, 15.1 |
preferences, 3.4.1.15, 23.3.23, 23.3.24 | protonated, 23.5.15 |
presentatio, 6.6.5 | protprot, 18.6 |
presentation, 7, 7.4 | psa, 16.3.5 |
presentations, 6 | psi, 5.5.5, 23.3.17 |
preserve, 23.7.11 | pubmed, 4.1.9 |
press-and-hold to rotate, 16.3.4 | purple box, 3.4.3.23 |
preview export movie, 8.2.8 | qs ddali, 3.3.6 |
primary aliphatic amines, 17.5 | hydrogen bond, 4.4 |
principal component analysis, 20.5 | pdb chem gl, 4.2.2 |
components, 20.6.3 | iw, 4.2.1 |
print, 20.4.15, 20.7.2 | quick pocket, 4.3 |
plot, 20.4.15 | selection, 22.1.6 |
printer.resolution, 3.4.1.15.6 | ws, 22.1.7 |
probe, 23.6.14 | ali, 3.3 |
problem, 23.10.5 | fasta, 3.3.2 |
problems, 23.10 | load, 3.3.1 |
with selection, 23.10.3 | new, 3.3.3 |
project, 3.4.1.4, 18.6.3 | pdb, 3.3.4 |
name, 18.1.4 | qsar, 17.7, 17.8 |
close, 3.4.1.12 | learn predict, 17.7 |
rename, 3.4.1.8 | predict, 17.8 |
properties, 5.5.2, 17.1, 23.7.12 | quad.buffer, 23.2.3 |
property, 16.3.5, 23.7.12, 23.7.13, 23.7.14, 23.7.15 | quality, 3.4.1.14, 3.4.1.15.5 |
expression, 18.4.9.5 | query, 13.3, 23.7.5, 23.7.6, 23.7.16 |
monitor, 16.3.5 | molt, 21.4 |
propogate, 22.1.10 | pdb, 4.1.1.1 |
protect, 6.6.7 | field, 4.1.1.4 |
protein, 9, 22.4.5, 23.5.5 | ligand code, 4.1.1.3 |
health, 3.4.6.2, 14.2 | sequence, 4.1.1.2 |
structure, 4 | processing, 16.9.3 |
analysis, 10 | setup, 16.9.1 |
closed cavities, 10.4 | quick, 3.1.19 |
contact areas, 10.3 | start chain breaks, 3.1.10 |
distance, 10.6 | move structure, 3.1.2 |
find related chains, 10.1 | read pdb, 3.1.1 |
finding dihedral angle, 10.8 | representation, 3.1.9 |
planar angle, 10.7 | selection, 3.1.4 |
rama export, 10.10 | level, 3.1.5 |
ramachandran plot, 10.9 | sequence alignment, 3.3.5 |
rmsd, 10.2 | what is selected, 3.1.6 |
surface area, 10.5 | dispalay.distance, 5.6.1 |
superposition, 11 | start color, 3.1.11 |
select superposition, 11.1 | quit, 3.4.1.18 |
racemic, 16.2.26, 17.6.5, 23.6.22 | alternative orientaiton, 22.3.10 |
radius, 22.1.8 | content, 9.2.1 |
rainbow, 3.4.1.15.5, 5.5.16, 16.2.33 | number selection, 23.3.35 |
rama export, 3.4.7.9 | propogate, 22.1.10 |
ramachandran plot, 3.4.7.9, 10, 10.10 | content, 3.4.4, 9.2, 9.2.1 |
range, 6.1.2 | mutate, 23.5.13, 23.5.14 |
ratio.selection, 3.4.1.15.5 | residues, 4.3, 23.3.13 |
dock ligand, 19.4 | resize, 5.2.7, 5.12.3 |
reactions, 16.12, 17.17.7 | resolution, 4.1.1.4 |
read, 3.4.1.2, 3.4.1.8.1, 3.4.1.16, 4.1.1, 4.1.4, 9.1 | restore, 3.4.2.11, 5.2.9, 5.10.1 |
chemical, 16.1.1 | recent backup, 3.4.2.11 |
table, 20.1.2 | results, 18.6.9 |
pdb, 3.1.1, 4.1.3 | stack, 18.1.13 |
sequence, 3.3.1 | review and adjust binding site, 18.1.6 |
table, 20 | rgroup, 17.17.3 |
reagent, 17.17.7 | ribbon, 3.1.10, 3.4.1.15.9, 3.5.1, 5.1.1, 5.1.4, 23.3.22, 23.3.33 |
rear, 5.2.9, 5.10.1 | as a mesh object, 23.3.3 |
recent files, 3.4.1.16 | faq, 23.3.22 |
pdb codes, 3.4.1.17 | preferences, 3.4.1.15.9 |
receptor, 18.2.2, 18.6.4, 18.6.6, 22.9.1, 23.6.2, 23.6.15, 23.6.16 | style, 3.4.1.15.9 |
from pdb, 18.1.1 | breaks, 5.1.4 |
flexibility, 22.9.2 | cylinders, 5.1.4 |
surface, 22.6.5 | smooth, 5.1.4 |
recover, 3.4.2.11 | worm, 5.1.4 |
rectangle, 22.1.6, 22.1.7 | ribbonColorStyle, 3.4.1.15.9 |
redo, 3.4.2.10, 16.3.12 | right, 3.1.16 |
refine, 13.7, 13.8 | click, 3.1.16 |
side chain, 13.8 | rigid, 17.18 |
region, 18.6.6 | super, 17.18.2 |
regresion, 20.4.12 | table, 17.18.1 |
regression, 20.6.1, 20.6.3 | ring, 16.3.2, 16.9.1 |
regul, 13.7 | rings, 16.2.26, 17.9, 17.18 |
regularization, 3.4.16.3, 13.7, 15.3 | rmsd, 3.4.7.2, 10, 10.2, 22.4.6, 23.5.7, 23.5.8 |
related, 3.4.7.1 | rock, 3.4.3.15, 5.7.6, 6, 6.1, 6.1.1, 8.2.6 |
relationship, 20.6 | speed, 6.1.2 |
release, 1 | root, 23.5.7 |
reload, 3.4.1.8.1, 3.4.1.8.2, 18.1.15, 23.6.5 | mean square deviation, 3.4.7.2, 10.2 |
dock results, 18.1.15 | rotate, 3.1.2, 3.4.3.15, 5, 5.7.6, 5.9, 5.9.1, 5.9.2, 6, 6.1, 6.1.1, 8.2.5, 16.2.32, 23.7.19 |
reloading object not running, 3.4.1.8.2 | chemical, 16.2.32 |
reloadingobjectrunning, 3.4.1.8.1 | when pasting, 16.3.4 |
remove, 3.1.10, 23.3.6, 23.3.7, 23.3.9 | easy, 3.4.3.12 |
salt, 23.7.20 | speed, 6.1.2 |
explixit.hydrogens, 17.2 | rotating fragment in editor, 16.3.4 |
salt, 17.2 | rotation, 3.1.3, 5.9.1 |
rename project, 3.4.1.8 | row, 20, 20.1.20, 20.1.26, 20.1.34 |
renumber, 23.5.4 | flag, 20.1.11 |
replace chemical, 16.2.30 | mark, 20.1.11 |
replacement, 19.7 | hide, 16.2.6 |
representation, 3.4.3.19 | show, 16.2.6 |
residue, 3.4.1.15.7, 23.3.8, 23.5.15, 23.5.22 | ruler, 5.5.16 |
safari, 23.4 | graphic, 3.2.12 |
salts, 16.2.16 | object, 3.2.9 |
sample, 17.18 | superposition, 3.4.8.1 |
save, 5.2.10, 5.12.1, 6.1.4, 20.4.16, 20.7.2, 23.3.32 | tree, 20.7.1 |
chemical, 16.3.7 | atom, 3.1.4, 3.1.5, 3.1.6 |
image, 5.12.1 | graphical, 3.1.4, 3.1.5, 3.1.6 |
plot, 20.4.16 | object, 3.1.4, 3.1.5, 3.1.6 |
object, 3.1.13 | purple.box, 3.4.3.23 |
print delete alignment, 9.5.2 | residue, 3.1.4, 3.1.5, 3.1.6 |
project icb, 3.1.14 | workspace, 3.1.4, 3.1.5, 3.1.6 |
slide, 6.4 | selectall, 3.4.2.3 |
table, 20.1.19 | selecting.neighbors, 3.2.12 |
tree, 20.7.2 | selection, 20.4.14, 20.7.1, 20.7.3, 22.1.5, 22.1.6, 22.1.7, 23.3.4, 23.3.6, 23.3.7, 23.3.8, 23.3.12, 23.3.31, 23.5.9, 23.5.10, 23.5.22, 23.6.15 |
image, 3.1.19, 3.4.1.14 | clear, 3.4.2.7 |
object, 3.1.13 | neighbors, 3.4.2.8 |
password, 3.4.1.10 | toolbar, 3.2.1 |
picture, 3.4.1.14 | alignment, 3.2.14 |
project, 3.1.14, 3.4.1.7, 3.4.1.8, 3.4.1.9 | all, 3.4.2.3 |
table.view, 20.1.6 | alter, 3.2.5 |
saving, 3.4.1.7 | amino, 3.2.10 |
project, 3.4.1.7 | atom, 3.2.1, 3.4.2.5 |
scaffold, 17.4 | basic, 3.2.3 |
scale, 3.4.1.15.5 | change, 3.2.5 |
scan, 18.1.12 | clear, 3.4.2.7 |
hits, 18.1.12 | column, 20.1.21 |
scatter, 18.4.9.2 | filter, 3.2.6, 3.4.2.5, 22.1.9 |
scatterplot, 18.4.9.4 | graphical, 3.2.1, 3.2.12 |
score, 18.4.8, 23.6.8, 23.6.9, 23.6.19 | invert, 3.4.2.6, 20.1.21 |
threshold, 18.4.4 | lasso, 3.2.1 |
screen, 22.7, 22.8.1 | level, 3.4.3.3 |
screening, 18.4, 18.4.1, 18.4.2, 22.9 | mode, 3.4.3.4 |
screenshot, 8 | near atoms, 3.4.2.8 |
movie, 8.1 | neighbors, 3.2.11, 3.2.13, 3.4.2.5, 3.4.2.8 |
script, 3.4.1.1.5, 6.6.4, 6.6.5, 23.5.19, 23.9, 23.9.1, 23.9.2, 23.9.3 | object, 3.2.9 |
sdf, 16.2.33, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4, 16.13, 17.6.1, 21.1, 22.8.2, 23.7.3, 23.7.4 | other, 3.2.14 |
search, 4.1.1.3, 16.13, 16.13.3, 21.2, 23.7.16 | pick, 3.2.1 |
filter, 16.9.2 | properties, 3.4.2.5 |
in workspace, 3.4.2.4 | range, 20.1.21 |
pdb, 4.1.1.2, 4.1.1.4 | residue, 3.4.2.5, 22.1.10 |
in.workspace, 3.4.2.4 | row, 20.1.21 |
secondary aliphatic amines, 17.5 | sphere, 3.2.11 |
structure, 3.4.6.1, 14.1, 23.3.19 | spherical, 3.4.2.8, 22.1.8 |
sctructure, 9.2.2 | superposition, 3.4.8.1, 11.1 |
structure, 3.4.4, 5.1.4, 9.2 | table, 3.2.14, 20.1.21 |
select, 20, 20.1.34, 23.5.22 | elements, 20.1.21 |
a tree branch, 20.7.1 | toolbar, 3.2.1 |
amino acid, 3.2.10 | tools, 3.2.2, 3.2.3, 3.2.5, 3.2.6 |
chemical, 16.3.9 | whole, 3.2.9 |
duplicates, 17.16 | workspace, 3.2.7, 3.2.13 |
neighbors, 3.2.11 | selectioninvert, 3.4.2.6 |
links, 9.2.9 | simulations, 23.8 |
selectneighbors workspace, 3.2.13 | single, 16.3.6 |
sequence, 3.3.1, 3.3.2, 3.3.3, 3.3.4, 3.3.6, 3.4.4, 4.1.1.2, 9, 9.1, 9.2, 9.2.8, 13.3, 22.2, 22.3, 22.3.3, 22.3.5, 23.5.12 | sketch accents, 5.7.3 |
analysis, 9.2 | accents, 3.4.3.14, 5.7.3 |
reordering, 9.5.4 | skin, 3.5.1, 5.1.1, 5.1.5, 23.3.15 |
structure, 9.2.6 | slab, 5.2.9, 5.10.1 |
type, 9.2.4 | slice, 5.10 |
DNA, 9.2.4 | slide, 6.1.4, 6.3.1, 6.6.1, 23.3.30 |
alignment, 3.3.5, 9.2.5, 9.4.5 | effects, 6.5 |
nucleotide, 9.2.4 | navigation, 6.3.2 |
protein, 9.2.4 | show, 6.3 |
search, 9.3 | blend, 6.5 |
structure.alignment, 9.2.6 | edit, 6.4.1 |
sequences, 3.3, 4.1.1, 9, 23.3.24 | effect, 6.5 |
unique, 9.2.13 | smooth, 6.5 |
extract, 9.2.13 | transition, 6.5 |
unique, 9.2.13 | slides, 6, 6.2, 6.3, 23.3.29 |
set, 16.2.29, 23.5.21 | smiles, 16.1.1, 16.3.5, 17.1, 17.6, 17.6.3, 17.6.4 |
formal charges, 17.5 | solvent.accessible.area, 23.5.19 |
bond type, 3.4.16.5, 15.5 | sort hitlist, 18.4.9.1 |
charges, 3.4.16.6, 15.6 | table, 3.4.10.4 |
chirality, 3.4.16.5, 15.5 | sorting, 18.4.9.1 |
disulfide, 13.9, 23.5.17 | compounds, 20.6.4 |
bond, 3.4.16.5, 15.5 | spec, 3.5.2 |
formal charge, 3.4.16.5, 15.5 | specifications, 23.2.1 |
tether, 3.4.16.5, 15.5 | faq, 23.2.1 |
types, 3.4.16.6, 15.6 | speed, 6.1.2 |
setAPFparams, 23.7.18 | sphere, 3.4.1.1.10, 22.3.4, 23.5.11 |
setup, 18.6.5, 23.6.14 | spherical, 22.3.5, 23.5.9, 23.5.12 |
ligand receptor, 19.1 | selection, 22.1.8 |
shade and box, 9.5.6 | split, 17.17.5 |
shading, 5.2.11 | spreadsheet, 17.6.2 |
shadow, 5.7.2 | square, 23.5.7 |
sheet, 23.3.19 | squence.amino acid, 9.2.4 |
shell preferences, 3.4.1.15.10 | stack, 18.1.11, 18.6.9, 23.8.2 |
shift, 5.5.3 | standard table, 20.1 |
shine, 3.4.1.15.5, 3.5.2 | standardize, 17.2 |
shineStyle, 3.4.1.15.3 | table, 17.2 |
show, 6.3.1, 20.1.30 | start, 16.13.2 |
hide column, 20.1.30 | dock, 18.1 |
side, 16.2.27 | startup, 23.9.2 |
by side, 16.2.27 | static, 23.5.8 |
stereo, 3.4.3.6 | stereo, 3.4.1.15.6, 16.2.26, 23.2.2, 23.2.3, 23.10.5 |
chains, 13.8 | hardware, 3.4.3.7 |
side-chain sampling, 18.6.10 | side-by-side, 3.4.3.6 |
side-chains, 18.2.1 | stereohard faq, 23.2.2 |
sigmaLevel, 3.4.5.6, 3.4.5.7, 12.6, 12.7 | stereoisomer, 17.6.5 |
similar, 3.4.7.1 | stereoisomers, 17.11 |
similarity, 17.14 | stick, 3.4.1.15.5 |
simulation, 23.8.2 | still, 8.2.3 |
store, 3.4.3.19, 6.1.4, 23.3.21 | find, 20.1.7 |
current view, 3.4.3.19 | replace, 16.2.30 |
faq, 23.3.21 | font, 20.1.9 |
strain, 3.4.6.2, 14.2 | size, 23.3.1 |
strip, 23.5.9 | grid, 20.1.5 |
structure, 3.4.5.3, 12.3, 20.6, 22.3, 22.3.3, 23.5 | histogram, 20.4.1 |
ensemble, 3.4.16.9, 15.9 | insert, 20.1.23 |
representation, 5.1.1 | layout, 20.1.5 |
smiles, 17.6.4 | mark, 20.1.11 |
display, 3.1.8 | row, 20.1.11 |
undisplay, 3.1.8 | mouse, 20.1.35 |
structures, 4.1.1, 16, 16.1 | navigation, 20.1.4 |
style, 3.4.1.15.5 | new, 3.4.1.1.7 |
substructure, 16.11, 16.13.3, 17.3, 23.7.5, 23.7.6 | column, 20.1.23 |
alerts, 17.3 | plot, 20.4 |
suface, 23.5.19 | print, 20.1.17 |
sulfur, 13.9 | rename, 20.1.13 |
superimpose, 3.4.8, 11.2, 22.3.3, 22.4.6, 23.3.5, 23.5.6, 23.5.7, 23.5.8 | rightclick, 20.1.12 |
3D, 3.4.8.2 | save, 20.1.3 |
grid, 3.4.8.4 | selection, 20.1.3 |
multiple proteins, 3.4.8.3 | search, 20.1.7 |
3D, 3.4.8.2, 11.3 | select, 20.1.21 |
Calpha, 3.4.8.2, 11.3 | setup, 20.1.16 |
arrange.grid, 3.4.8.4, 11.5 | sort, 20.1.32 |
backbone, 3.4.8.2, 11.3 | split fragments, 16.2.31 |
flexible, 17.18.3 | view, 20.1.5 |
heavy atoms, 3.4.8.2, 11.3 | save, 20.1.6 |
multiple, 3.4.8.3, 11.4 | zoom translate, 16.2.28 |
rigid, 17.18.1, 17.18.2 | action, 20.1.35 |
substructure, 17.18.1, 17.18.2, 17.18.3 | alignment, 20.1.10 |
superposition, 17.18 | append, 20.1.33 |
surface, 3.4.1.15.5, 3.5.1, 5.1.1, 5.1.7, 5.2, 23.3.15 | clone, 20.1.14 |
area, 3.4.7.5, 10 | color, 20.1.8 |
area, 3.4.7.5, 10.5 | column, 16.2.2, 20.1.23, 20.1.24, 20.1.30 |
surfaces, 5.2.1 | columns, 16.2.6 |
surrounding, 4.3, 22.3.4, 23.5.11 | compare, 16.2.19 |
swissprot, 3.3.1, 9.1 | copy, 16.2.5 |
symmetry, 3.4.5.1, 3.4.5.3, 12.1, 12.3, 22.3.7, 22.3.8 | cursor, 20.1.35 |
packing, 3.4.5.1 | delete, 20.1.12, 20.1.15 |
tab, 20.1.2, 20.1.19 | display, 23.9.4 |
pdb, 3.5.4 | double.click, 20.1.35 |
table, 16.2.21, 16.2.22, 16.2.26, 16.2.28, 16.2.29, 16.2.32, 16.2.33, 17.6.2, 17.9, 17.18.1, 20, 20.1.26, 20.1.31, 20.1.34, 20.4, 20.4.1, 20.4.4, 20.4.5, 20.4.7, 20.4.9, 20.4.10, 20.4.11, 20.4.12, 20.4.13, 20.4.14, 20.4.15, 20.7, 23.5.19, 23.7.9, 23.7.10, 23.7.12, 23.7.13 | edit, 16.2.15 |
alignment, 20.1.10 | excel, 16.2.8, 20.1.18 |
clone, 20.1.14 | export, 16.7 |
color, 20.1.8 | filter, 16.2.10, 20.1.33 |
column format, 20.1.31 | find-replace, 16.2.11 |
copy, 20.1.27, 20.1.28 | to screen, 20.1.4 |
delete, 20.1.15 | font, 20.1.9 |
edit, 20.1.22 | foreground, 23.9.4 |
filter, 20.1.33 | grid lines, 20.1.4 |
hyperlink, 16.2.13 | plot function, 3.4.9.1 |
insert, 20.1.25 | identify ligand binding pocket, 3.4.6.5 |
join, 3.4.10.5 | oda, 3.4.6.4 |
label, 16.2.12 | superimpose, 3.4.8 |
landscape, 20.1.16 | table, 3.4.10 |
mark, 16.2.12 | Learn, 3.4.10.1 |
merge, 3.4.10.5, 16.2.20, 17.15 | clustering, 3.4.10.3 |
mouse, 20.1.35 | merge, 3.4.10.5 |
name, 20.1.13 | predict, 3.4.10.2 |
new, 20.1.1 | torsion, 5.9.6, 23.5.16 |
options, 20.1.12 | angles, 5.9, 5.9.6 |
orientation, 20.1.16 | transition.blend, 23.3.30 |
portrait, 20.1.16 | transitions, 6, 23.3.29 |
print, 16.2.9, 20.1.4, 20.1.17 | translate, 3.1.2, 5, 5.9, 16.2.28 |
read, 20.1.2 | translation, 3.1.3, 5.9.3, 9.2.3, 20.4.13 |
rename, 20.1.13 | transparent, 5.2.8 |
right click, 20.1.12 | background, 5.12.3 |
row, 20.1.25 | ribbon, 23.3.3 |
rows, 3.4.10.7 | tree, 9.5.4, 20.7.1, 20.7.2, 20.7.3 |
save, 16.2.7, 20.1.3, 20.1.4, 20.1.19 | branch swapping, 9.5.4 |
scale, 20.1.16 | distance, 17.12.3 |
scroll, 20.1.4 | edit, 17.12.4 |
sdf, 16.2.7 | reorder, 17.12.3 |
select, 20.1.21 | trouble shooting, 23.10.2 |
setup, 20.1.16 | trouble-shooting, 23.10.3 |
sort, 3.4.10.4, 16.2.3, 20.1.32 | troubleshooting, 23.10 |
standard, 20.1 | truncating a mesh object, 23.3.14 |
view, 16.2.4, 16.2.27 | crash qlock, 23.10.4 |
width, 20.1.4 | tsv, 20.1.19 |
tables, 17.14, 20 | tut analyze alternative orientations, 22.3.10 |
tautomer, 17.10, 23.5.15 | occupancy, 22.3.9 |
tautomers, 17.10 | symmetry, 22.3.8 |
temperature, 3.4.6.3, 14.3 | bind pocket, 22.3.3 |
template, 13.3, 17.18 | hydrogen bond, 22.3.6 |
docking, 23.6.4 | ligand pocket, 22.3.4 |
terminal, 16.2.26 | multiple receptor, 22.9.1 |
font size, 23.3.1 | pocket conservation, 22.3.5 |
text, 3.4.1.15.7, 6.6, 6.6.1, 6.6.6, 16.2.26, 16.13.3, 23.7.16 | tut2, 22.3 |
search, 16.9.4 | tut2a, 22.3.1 |
texture, 3.5.5 | tut2b, 22.3.2 |
thoroughness, 17.9, 17.18, 23.6.13 | tut3, 22.4 |
three, 16.2.21, 23.7.11 | tut3a, 22.4.1 |
threshold, 3.4.1.15.5 | tut3b, 22.4.3 |
tier, 3.1.17 | tut3bb, 22.4.4 |
time, 23.6.12 | tut3c, 22.4.5 |
racemic, 17.6 | tut3e, 22.3.11 |
tools 3D, 3.4.6 | tut3f, 22.4.6 |
analysis, 3.4.7 | tut4b, 22.5.1 |
append rows, 3.4.10.7 | tut4c, 22.5.4 |
extras, 3.4.9 | tut4d, 22.5.5 |
tut5a, 22.7.1 | shadow, 3.4.3.13 |
tut5b, 22.7.2 | sketch accents, 3.4.3.14 |
tut5c, 22.8.1 | slide show, 6.3.1 |
tut5e, 22.8.2 | tools, 3.4.3 |
tutorial 2D pharmacophore, 22.5.7 | tree, 20.7.3 |
3D pharmacophore, 22.5.6 | undisplay all, 3.4.3.1 |
chemical search, 22.5.3 | stach, 3.4.16.10, 15.10 |
edit chemical, 22.5.2 | virtual, 18.4, 18.4.1, 18.4.2, 22.7, 22.8.1 |
graphical selections, 22.1.5 | screening examples, 22.8 |
molecular documents, 22.1.11 | virus, 3.4.5.3, 12.3 |
sequence alignment, 22.2 | vls, 18.2, 18.4, 18.4.5, 18.4.9.5, 22.8.2, 23.6.8, 23.6.9 |
link, 22.2.3 | analysis, 18.4.9.5 |
load pdb, 22.2.1 | getting started, 18.4.2 |
sequence, 22.2.2 | histogram, 18.4.9.3 |
sequence conservation, 22.2.4 | scatter plot, 18.4.9.2 |
tutorials, 22 | introduction, 18.4.1 |
tween, 8.2.4 | preferences, 18.4.4 |
two, 16.2.21, 23.7.11 | results, 18.4.8 |
unclip, 5.2.9, 5.10.1 | run, 18.4.5 |
undisplay, 3.1.7, 5.1.8, 23.3.9, 23.3.31 | scatterplot, 18.4.9.4 |
origin, 5.5.12 | results, 18.4.8 |
undo, 3.4.1.15, 3.4.2.9, 16.3.12 | volume, 16.3.5 |
redo structure, 16.3.12 | wavefront, 3.5.5, 5.2.10 |
uniprot, 3.3.1 | weak, 23.5.20 |
unique, 16.2.26, 17.16 | web, 22.1.11 |
unit, 3.4.5.3, 12.3 | browser, 3.4.1.11 |
units, 23.6.1 | weight, 17.1, 23.7.12, 23.7.15 |
unix, 23.9.2 | weighted, 20.7 |
updates, 1 | what to dock, 18.1.2 |
use activeicm, 7.4 | width, 20.1.20 |
user, 1, 16.13.4 | window, 3.1.17 |
user-defined groups, 16.3.3 | windows, 3.1.18, 16.13.1 |
uundisplay-all, 3.4.3.1 | wire, 3.4.1.15.5, 3.5.1, 5.1.1, 5.1.2, 23.3.4, 23.3.20 |
van der waal, 5.5.15 | wireBondSeparation, 3.4.1.15.1 |
variable, 3.4.1.15.7, 23.3.8 | working directory, 23.6.24 |
verbose, 17.9 | workspace, 3.1.7, 4.2.1, 16.5.2, 22.1.7 |
vicinity, 17.9 | panel, 3.1.7 |
video, 8 | selection, 3.2.7 |
view, 3.4.3.19, 6.3.1, 16.2.26, 23.3.21, 23.8.2 | navigation, 3.2.8 |
animate view, 3.4.3.15 | write, 3.1.19, 5.12.1, 20.4.16, 23.7.4, 23.8.1 |
center, 3.4.3.20 | image, 3.4.1.14 |
color background, 3.4.3.18 | image, 3.4.1.14 |
dock results, 18.1.11 | object, 3.1.13 |
fog, 3.4.3.5 | picture, 3.4.1.14 |
macroshape, 3.4.3.22 | project, 3.1.14, 3.4.1.7 |
menu, 3.4.3 | table, 20.1.3 |
mesh clip, 5.10.1 | writing a pdb file, 23.5.3 |
perspective, 3.4.3.9 | ray, 3.4.5 |
selection level, 3.4.3.3 | xi, 5.5.5, 23.3.17 |
mode, 3.4.3.4 | xstick, 5.1.3, 23.3.20 |