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[ Download | Graphics | Structure Analysis | Surfaces | Superimpose Proteins | Crystallographic Tools | Sequence Analysis | Plots ]
NOTE: ICM-Browser-Pro contains all the features in ICM-Browser. Click here for the ICM-Browser How To Guide. |
2.2.1 Download and Install ICM-Browser-Pro |
Getting Started: Download and Install ICM-Browser-Pro | |
Download ICM-Browser-Pro Distribution. | Download |
Install ICM-Browser-Pro. | Windows Linux Mac |
2.2.2 Graphics |
Graphics and Movie Making | |
How to generate the shadow effect. | HTML GUI Manual |
How to make a screenshot movie | HTML GUI Manual |
How to make a view-defined movie | HTML GUI Manual |
How to move a molecule independently of the other display objects (Connect). | HTML GUI Manual |
2.2.3 Protein Structure Analysis |
Protein Structure Analysis | |
How to calculate contact areas between molecules. | HTML GUI Manual |
How to identify closed cavities. | HTML GUI Manual |
How to calculate surface area. | HTML GUI Manual |
How to generate interactive Ramachandran plots. | HTML GUI Manual |
2.2.4 Surfaces |
Surfaces | |
How to generate electrostatic and binding property surfaces. | HTML GUI Manual |
How to connect and rotate/translate surface (mesh). | HTML GUI Manual |
How to crop a mesh/surface. | HTML GUI Manual |
How to save a mesh/surface. | HTML GUI Manual |
2.2.5 Superimpose Proteins |
Superimpose Proteins | |
How to superimpose proteins based on 3D by visible atoms, C-alpha, backbone or heavy atoms. | HTML GUI Manual |
How to superimpose multiple proteins based on aligned residues.. | HTML GUI Manual |
How to superimpose by specific interatomic pairs. | HTML GUI Manual |
2.2.6 Crystallographic Tools |
Crystallographic Tools | |
How to contour electron density. | HTML GUI Manual |
How to display crystallographic cell. | HTML GUI Manual |
How to display crystallographic symmetry. | HTML GUI Manual |
How to convert x-ray density to a grid. | HTML GUI Manual |
2.2.7 Sequence Analysis |
Sequence Analysis | |
How to annotate an alignment - box and shade. | HTML GUI Manual |
How to annotate an alignment with text. | HTML GUI Manual |
How to display secondary structure in an alignment. | HTML GUI Manual |
How to extract sequences from pdb files. | HTML GUI Manual |
How to assign secondary structure. | HTML GUI Manual |
How to link sequence, alignments, and structures. | HTML GUI Manual |
How to save as image, print, and delete sequences and alignments. | HTML GUI Manual |
2.2.8 Plotting Tools |
Plotting Tools | |
Make fully interactive colorful X-Y plots and histograms with up to 4 dimensions. | HTML GUI Manual |
Save plot and histogram as image. | HTML GUI Manual |
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