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[ Setup Ligand | Setup Receptor | Preferences | Default Display | Surface | Hydrogen Bonds | Energy Circles | Display Hydrogens | Unsatisfied Hydrogen Bonds | Center Ligand | Edit | Undo/Redo | Add Substituent | Multiple Substitutents | Edit 2D | SCORE and Strain | Save Spreadsheet | Pocket Size | Minimization | Dock | Restrain | Screen Substituents | Fragment Linkers ]
22.6.1 How to setup the ligand in the ICM 3D Ligand Editor. |
22.6.2 How to setup the receptor in the ICM 3D Ligand Editor. |
22.6.3 How to change the 3D Ligand Editor preferences. |
22.6.4 How to configure the default display in the ICM 3D Ligand Editor. |
22.6.5 How to display and undisplay the ligand surface representation in the ICM 3D Ligand Editor. |
22.6.6 How to display hydrogen bonds in the ICM 3D ligand editor. |
22.6.7 How to display energy atomic circles in the ICM 3D Ligand Editor. |
22.6.8 How to display and undisplay hydrogen atoms in the ICM 3D Ligand Editor. |
22.6.9 How to display unsatisfied hydrogen bonds in the ICM 3D Ligand Editor. |
22.6.10 How to center on a ligand in the ICM 3D Ligand Editor. |
22.6.11 How to begin editing your ligand in the ICM 3D Ligand Editor. |
22.6.12 How to undo and redo changes in the ICM 3D Ligand Editor. |
22.6.13 How to add and sample new substiutents to your ligand in the ICM 3D Ligand Editor. |
22.6.14 How to sample more than one substituent at a time in the ICM 3D Ligand Editor. |
22.6.15 How to edit the ligand in 2D in the ICM 3D Ligand Editor. |
22.6.16 How to evaluate the SCORE and ligand strain.. |
22.6.17 How to add an edited ligand to a chemical spreadsheet (table). |
22.6.18 How to change the size of the ligand binding pocket - change purple box size. |
22.6.19 How to perform ligand minimization in the ICM 3D Ligand Editor. |
22.6.20 How to re-dock a ligand in the ICM 3D Ligand Editor. |
22.6.21 How to restrain (tether) atoms during docking. |
22.6.22 How to screen databases of chemical substituents. |
22.6.23 How to sample linkers between two chemical fragments. |
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