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3.3 How to Work With Sequences and Alignments
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[ SwissProt | FASTA | New Sequence | Extract Sequence | Sequence Alignment | Drag & Drop ]

A quick start guide on how to search for, read in, analyze sequences and build alignments.

3.3.1 How to Download a SwissProt sequence


To download a SWISSPROT sequence into ICM

3.3.2 How to Load a FASTA Format File


To read a FASTA file:

3.3.3 How to Make a New Sequence


3.3.4 How to Extract a Sequence from a PDB Structure.


3.3.5 How to Make a Sequence Alignment


An example of how to perform an alignment between two sequences.

PDB Search:

NOTE: To build a multiple alignment just select more sequences right click and align sequences. Or you can drag and drop sequences into an already made alignment.

3.3.6 How to Make an Alignment using Drag and Drop


(An easier way to build an alignment is to drop one sequence onto another in the ICM Workspace}

You can add sequences to an alignment by dragging and dropping them into the alignment.


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