[ UniProt | Cut and Paste | Extract from PDB | From File | Save Sequence ]

Available in the following product(s): ICM-Pro

There are a number of different ways to load a sequence into ICM via the Graphical User Interface.

7.1.1 Read a Sequence from UniProt

Uniprot is a curated protein sequence database which provides a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.).

To read a sequence from UniProt:

• File/Load/UniProt
• Enter UniProt ID

or use the option in the Search Tab.

7.1.2 Cut and Paste a Sequence

Paste your own sequence into ICM

• File/New/Sequence
• Paste the Sequence into the box provided.

7.1.3 Extract a Sequence from a PDB File

Extract a Sequence from a PDB file

• Right click on a molecule in a loaded PDB file in the ICM Workspace.
• Select Extract Sequence(s) and the sequence will be laoded into the Sequences section of the ICM Workspace.

7.1.4 Read directly from a Sequence File

To read a sequence from a file:

If you have a sequence file saved in FASTA format it can be read into ICM by:

• File/Open

7.1.5 Save Sequence

To save a sequence in FASTA format:

• Right click on the sequence name in the ICM worksapce.
• Select the option Save As.
• Choose FASTA format from the Windows "Save as type:" drop down menu option.