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Contents
 
Help Videos
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Cheminformatics
Molecular Dynamics
Tables and Plots
Local Databases
Tutorials
 
Index

Index

2D, 5.8.8, 7.3.24, 7.3.28, 7.13, 7.19.1, 7.19.3GRAPHIC.store Display, 3.7.3
     Chemical Label, 5.8.11     NtoC Rainbow, 3.7.4
     bioisostere, 7.8.1     alignment Rainbow, 3.7.4
     chemical label, 5.8.11     atomLabelShift, 3.7.7
     from PDB, 7.1.1     ballStickRatio, 3.7.1
     interaction diagram, 7.6     center Follows Clipping, 3.7.3
     to 3D, 7.19, 7.19.2     clash Style, 3.7.3
     depiction, 7.19.1     clashWidth, 3.7.3
3D, 5.6, 5.8.8, 7.1.3, 7.3.24, 7.3.28, 7.3.31, 7.19.1, 11.2     clip Grobs, 3.7.3
     chemical, 7.4.16          Skin, 3.7.3
     interactive ligand editor, 2.6.5          Static, 3.7.3
     object, 5.3.9     discrete Rainbow, 3.7.4
     print, 5.7     displayLineLabels, 3.7.7
     printing, 5.7     displayMapBox, 3.7.3
     stereo, 5.6     distance Label Drag, 3.7.1
3DMOLT, 10.5     dnaBallRadius, 3.7.9
3D_Similarity_PDB_Search, 4.6     dnaRibbonRatio, 3.7.9
     bioisostere, 7.8.2     dnaRibbonWidth, 3.7.9
     predict local flexibility, 4.5.13     dnaRibbonWorm, 3.7.9
          protein health, 4.5.12     dnaStickRadius, 3.7.9
          tools identify ligand binding pocket, 4.5.15     dnaWormRadius, 3.7.9
               oda, 4.5.14     font Scale, 3.7.7
4D docking, 3.2.2     fontColor, 3.7.7
ActiveICM, 2.5.1.12     fontLineSpacing, 3.7.7
Atom Single Style, 3.7.3     grobLineWidth, 3.7.3
Baell, 7.4.9     hbond Ball Period, 3.7.1
Beep, 3.7.11               Style, 3.7.1
BlastDB Directory, 3.7.2     hbondAngleSharpness, 3.7.1
     alphas, 5.8.3     hbondMinStrength, 3.7.1
COLLADA, 2.5.1.7     hbondStyle, 3.7.1
CPK, 2.6.1     hbondWidth, 3.7.1
ChEMBL, 3.2.3, 7.1     hetatmZoom, 3.7.1
Chemical Cluster, 11.4.3     hydrogenDisplay, 3.7.1
     Search, 11.4.2     light, 3.7.3
Clash Threshold, 3.7.10     lightPosition, 3.7.3
DNA, 3.3     mapLineWidth, 3.7.3
Decomposition, 7.33.3     occupancy Radius Ratio, 3.7.3
Dock Directory, 3.7.2     occupancyDisplay, 3.7.3
Drug Bank, 3.2.8     quality, 3.7.3
Editor, 3.7.2     rainbow Bar Style, 3.7.4
FILTER.Z, 3.7.2     resLabelDrag, 3.7.7
     gz, 3.7.2     resize Keep Scale, 3.7.3
     uue, 3.7.2     ribbonRatio, 3.7.9
FTP.createFile, 3.7.11     ribbonWidth, 3.7.9
     keep File, 3.7.11     ribbonWorm, 3.7.9
     proxy, 3.7.11     rocking, 3.7.4
Filter.zip, 3.7.2          Range, 3.7.4
Force Auto Bond Typing, 3.7.11          Speed, 3.7.4
Free Wilson, 7.33.2     selectionStyle, 3.7.3
GIF, 2.5.1.15, 5.16, 5.16.2     site Label Drag, 3.7.7
     siteArrow, 3.7.7     printerDPI, 3.7.6
     stereoMode, 3.7.3     scale, 3.7.6
     stickRadius, 3.7.1     stereoAngle, 3.7.6
     surfaceDotDensity, 3.7.3     stereoBase, 3.7.6
     surfaceDotSize, 3.7.3     stereoText, 3.7.6
     surfaceProbeRadius, 3.7.3INCHI, 7.19.2
     transparency, 3.7.3IQR, 9.4.6
     wire Width, 3.7.1Icm Prompt, 3.7.10
     wormRadius, 3.7.9InChi, 7.3.20, 7.4.12, 7.19.2
     xstick Backbone Ratio, 3.7.1     key, 7.3.20
          Hydrogen Ratio, 3.7.1     Directory, 3.7.2
          Style, 3.7.1JPEG, 2.5.1.15
          Vw Ratio, 3.7.1KMZ, 2.5.1.7
GROB.arrowRadius, 3.7.3Log Directory, 3.7.2
     atomSphereRadius, 3.7.3LogP, 9.6
     contourSigmaIncrement, 3.7.3LogS, 9.6
     relArrow Size, 3.7.3MD, 8, 8.1, 8.2, 8.3, 8.4
     relArrowHead, 3.7.3MOL, 7, 7.3.3, 7.3.24, 7.3.25, 7.3.26, 7.3.27, 9.2
GUI.auto Save, 3.7.4MOLT, 10.1
               Interval, 3.7.4MOVIE.frame Grab Mode, 3.7.4
     enumeration Memory Limit, 3.7.11MPO, 7.31
     max Nof Recent Files, 3.7.11Map Atom Margin, 3.7.10
          Sequence Length, 3.7.4     Sigma Level, 3.7.10
     splash Screen Delay, 3.7.11Markush, 11.4.9
               Image, 3.7.11     create, 11.4.7
     table Row Mark Colors, 3.7.4     File Size Mb, 3.7.11
     workspace Folder Style, 3.7.4Max_Fused_Rings, 7.10
     workspaceTabStyle, 3.7.4Mnconf, 3.7.10
GigaScreen, 10.5MolPSA, 7.10
HTTP.proxy, 3.7.11MolVol, 7.10
     support Cookies, 3.7.11Molcart, 7.5.3
     user Agent, 3.7.11MoldHf, 7.10
How To Guide, 2Movie.fade Nof Frames, 3.7.4
Html, 3.2.1.6     quality, 3.7.4
Http Read Style, 3.7.11          Auto, 3.7.4
Hydrogen.bond, 3.7.5Nof_Atoms, 7.10
ICM Browser How To, 2.1Nof_Chirals, 7.10
          Pro How To, 2.2Nof_HBA, 7.10
IMAGE.bondLength2D, 3.7.6Nof_HBD, 7.10
     color, 3.7.6Nof_Rings, 7.10
     compress, 3.7.6Nof_RotBonds, 7.10
     gammaCorrection, 3.7.6Output Directory, 3.7.2
     generateAlpha, 3.7.6PAINS, 7.4.9, 7.10.3
     lineWidth, 3.7.6     chemicals, 7.4.9
     lineWidth2D, 3.7.6PCA, 11.4.4
     orientation, 3.7.6     analysis, 7.26
     paper Size, 3.7.6PDB, 3.2.1.6, 4.1.2, 4.3.3, 4.6, 7.1.1
     previewResolution, 3.7.6     Directory, 3.7.2
     previewer, 3.7.6          Style, 3.7.2
     print, 3.7.6     link, 9.1.40
          Field, 2.5.2.13     wrap Comment, 3.7.7
          Homology, 2.5.2.15SLIDE.ignore Background Color, 3.7.4
          Identity, 2.5.2.14          Fog, 3.7.4
          Sequence, 2.5.2.16SMILES, 7.1.2, 7.2.4, 7.4.12
     convert, 4.1.2Select Min Grad, 3.7.10
PFAM, 2.5.1.7Show Res Code In Selection, 3.7.7
PLOT.Yratio, 3.7.8Special Cases, 7.31.1.1
     color, 3.7.8SureChEMBL, 3.2.4
     date, 3.7.8Swissprot, 2.5.1.7
     draw Tics, 3.7.8     Dat, 3.7.2
     font, 3.7.8     link, 9.1.40
     fontSize, 3.7.8Temp Directory, 3.7.2
     labelFont, 3.7.8USER.email, 3.7.11
     lineWidth, 3.7.8     friends, 3.7.11
     logo, 3.7.8     full Name, 3.7.11
     markSize, 3.7.8     organization, 3.7.11
     orientation, 3.7.8     phone, 3.7.11
     paper Size, 3.7.8Ultra Large Libraries, 10.5
     previewer, 3.7.8Uniprot, 9.1.40
     rainbowStyle, 3.7.8Van Drie, 7.33.5
     seriesLabels, 3.7.8     Label Style, 3.7.7
PNG, 2.5.1.15, 3.1.14, 5.16, 5.16.2Water Radius, 3.7.10
PSA, 7.10.7Wilson, 7.33.2
PowerPoint, 11.2Wire Style, 3.7.1
Projects Directory, 3.7.2XPDB Directory, 3.7.2
Prosite Dat, 3.7.2Xstick, 2.6.1
     Viewer, 3.7.2a-bright, 2.6.2
Pub Chem, 3.2.9acceptor, 7.4.9
PubMed, 3.2.1.7active, 6.7
     Reference, 9.1.40activeICM, 6.8
Pubchem, 3.2.9activeicm, 6.7, 6.12, 6.14, 6.14.1
QSAR, 9.6     advanced, 6.14
R, 7.7, 7.33.1     background images, 6.15
R-Group, 7.33.3     control, 6.13
REAL, 7.5.5activeicmjs, 6.16
RIDE, 10.5activity, 9.6
RIDGE, 10.5     cliff, 7.33.5, 7.33.6, 11.4.11
RMSD, 4.4.2          tutorial, 11.4.11
RNA, 3.3add database, 7.9.3
Ramachandran Plot, 4.5.9     new data, 7.3.7
Real Format, 3.7.10adding fragment, 7.4.8
     Label Shift, 3.7.7          in editor, 7.4.8
          Style, 3.7.7administration, 7.9.5
SALI, 7.33.5, 11.4.11album, 5.15.3
SAR, 9.4.25, 9.6alias, 7.4.5
     table, 7.33.3, 11.4.9align, 3.1.11, 7.13
SDF, 7, 7.3.24, 7.3.25, 7.3.26, 7.3.27, 9.2     color 2D scaffold, 7.13
SEQUENCE.site Colors, 3.7.4allosteric, 4.5.15
SITE.label Style, 3.7.7alpha, 2.6.2
     labelOffset, 3.7.7     channel, 3.7.6
amidinium, 7.14backup, 2.5.2.11
amino acid, 3.3bad, 7.10
     acids, 7.4.6     groups, 7.4.9
anaglyph, 5.6ball, 3.7.5
analysis, 2.5.4     and stick, 2.6.1
angle, 4.5.7, 4.5.8, 5.8.5, 5.9, 5.12.6, 7.15balloon, 9.4.26
animate, 2.5.3.15, 5.10.7bases, 7.4.6
     view, 5.10.7basicsel, 3.6.2
animation, 5.10.7.1, 5.10.7.2, 5.10.7.3, 5.10.7.4bbb, 7.10.4
     store, 5.10.7.4best, 7.3.34
animations, 6bicyclics, 7.4.6
annotate, 3.6.21, 7.12binding properties, 5.3.1
     by substructure, 7.12bioinfo menu, 2.5.4
     plot, 9.4.24bioisoester, 7.8
antialias, 2.5.1.15, 2.5.3.10bioisostere, 7.8, 7.8.1, 7.8.2
     lines, 2.5.3.17biological, 4.3.3
     lines, 2.5.3.17biomolecule, 2.5.5, 4.3.3, 11.3.8, 11.3.12
apf, 4.4.6, 4.7blast, 3.2.5
append, 9.1.44     search, 3.2.5
     table, 9.1.44blood brain barrier, 7.10.4
     rows, 2.5.10.7bond, 4.2.3, 4.2.3.1, 4.2.3.2, 7.4.10
area, 4.5.3, 4.5.14, 11.3.5bonding, 5.1.8
aromatic, 7.3.28     preferences, 3.7.1
arrange, 3.1.13.1box, 3.7.7, 5.8.16
     window, 3.1.13.1browse, 7.3.31
as2_graph, 3.6.5     mode, 7.3.31
assign, 5.1.3     molt, 10.2
     2D coordinates, 7.19.1build, 5.10.7.1
atom, 3.7.5, 7.3.28buttons, 6.14
atomLabelStyle, 3.7.7bye, 2.5.1.19
atomic property fields, 4.4.6, 4.7     alpha, 5.1.10
attachment, 7.4.3, 7.5.1     trace, 5.1.10
     point, 7.32.4ca-trace, 5.1.10
author, 3.2.1.3cache, 6.14.1
     close tree, 7.25.5calculate, 7.10
     play slide, 6.13     properties, 7.10
available properties, 7.10.1carboxylic acid, 7.14
ave, 9.7.1cation, 4.2.5
avi, 5.16, 5.16.2cavities, 4.5
axes, 9.4.15     closed, 4.5.4
axis, 9.4.11cell, 4.3.2
     options, 9.4.10center, 2.5.3.20, 3.1.3, 5.12, 5.12.5, 9.1.40
     grid, 9.4.10     and representative members, 9.7.2
     range, 9.4.10change height of all rows, 9.1.7
     title, 9.4.10     row height, 9.1.7
b-factor, 4.5.13, 11.3.10     selection, 3.6.7
backbone, 5.1.10     speed range, 5.10.7.2
background, 5.4.2, 5.4.3charge, 2.5.3.21, 5.8.2, 7.4.3, 7.5.1
     images activeicm, 6.15check box, 6.6.6
     image, 5.4.3     export excel, 7.2.3
          3D, 7.2.5cheminformatics, 7, 7.3
          editor, 7.2.4     tutorials, 11.4
          image, 7.2.6chemistry, 7.21
          table, 7.2.2     convert, 7.19
     view, 7.3.28     pca, 7.26
chembl, 3.2.3, 3.2.4     smiles, 7.19.2
chemical, 7, 7.3.28, 7.3.30, 7.3.31, 7.3.34, 7.3.35, 7.4.10, 7.7, 7.9.4, 7.10.3, 7.19.1, 7.21, 7.32.4, 7.32.5, 9.7.1, 11.4.4     duplicates, 7.30
     clustering, 7.25, 7.25.6     remove.redundant, 7.30
     dictionary, 7.4.4, 7.4.5, 7.4.6chemspace append, 11.4.4.4
     draw, 11.4.1     build visualize, 11.4.4.1
          spreadsheet tutorial, 11.4.1     compare, 11.4.4.8
     edit buttons, 7.4.11     delete row, 11.4.4.3
     editor, 7.4, 7.4.8     distinguish, 11.4.4.7
     fragments, 7.3.33     export, 11.4.4.5
     group, 7.4.5     project, 11.4.4.6
     groups, 7.4.5, 7.4.8     select, 11.4.4.2
     modifiers, 7.32.2chi, 5.8.5
     properties, 11.4.4chiral, 7.22
     right click, 7.4.3chirality, 7.22
     search, 7.5clash, 3.7.5, 5.8.15
          filter, 7.5.2classes, 7.3.28
          text, 7.5.4clear display and planes, 2.5.3.2
     sketch, 11.4.1     selection, 3.6.6
     space, 7.27     planes, 2.5.3.2
     spreadsheet, 3.2.3, 7.1.3, 7.3.1, 7.4.14, 11.4.1click, 3.1.12, 5.11, 5.12
          compare, 7.3.22clip, 5.3.10, 5.13.1
          template, 7.3.2clipboard, 5.15.3, 9.7.3
     spreadsheets, 7.3clipping planes, 5
     substituent, 7.8     tool, 5.13
     substructure, 3.2.1.1     tools, 5.13
     table display, 7.3.3clone, 2.5.1.2
     tables, 9.2close, 5.3.3, 5.3.4
     toxicity, 7.10.3     downstream cluster, 7.25.5
     append, 7.4.13     cavities, 4.5.15
     clustering, 7.25, 7.25.1cluster, 9.7.1
     draw, 7.4.1     representative.center, 7.25.2
     duplicates, 7.3.21clustering, 9.7, 11.4.3
     editor, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6cns, 7.31
     load, 7.1collada, 2.6.6, 5.3.7
     merge, 7.29color, 4.5.12, 5.3.2, 5.3.3, 5.3.4, 5.3.9.4, 5.4, 5.4.1, 5.8.2, 5.8.3, 7.3.35, 7.13, 9.1.45, 9.7.4
     new, 7.4.1     background, 5.4.2
     properties, 7.3.19     by, 5.4
     query, 7.4.3, 7.5.1, 7.5.3     chemical, 7.3.35
     read, 7.1     surface by proximity, 5.3.3
     save, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.4.13               selection, 5.3.4
     search, 7.4.3, 7.5, 7.5.1, 7.5.3     table, 7.3.27
     similarity, 7.4.3, 7.5, 7.5.1, 7.5.3     2D sketch, 7.5.6.5
     spreadsheet, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.3     background, 2.5.3.18, 5.4.2
     structure, 7.4.13     distance, 5.8.10
     table, 7.3, 9.2     mesh, 5.3.9.3
coloring, 5.4.1     row, 9.1.36
column, 9, 9.1.6, 9.1.22, 9.1.25, 9.1.39, 9.1.40, 9.4, 9.4.1     rows, 9.1.44
     annotation, 9.1.41     selection to table, 9.1.37
     order, 9.1.29     chemical, 7.3.16
     plot, 9.4.6covalent bond, 4.5.11
     row width, 9.1.22cpk, 5.1.5
     statistics, 9.1.32crash, 2.5.2.11
     visibility order, 9.1.28creat, 6.6.1
     color, 9.1.10create, 9.1.1
     hide, 7.3.8     markush, 7.32.3
     show, 7.3.8     new objects, 3.3
combinatorial chemistry, 7.32cross section, 5.13
     library, 11.4.8cryptic, 4.5.15
combine, 2.5.10.5crystal, 4.3.2
     display style, 3.7.9crystallographic analysis, 4.3
compact tree, 7.25.5          biomolecule, 4.3.3
compare, 7.3.29, 7.28, 7.29          contour map, 4.3.6
     table, 7.3.22          convert2grid, 4.3.7
     tables, 7.28          crystallographic cell, 4.3.2
compatible, 2.5.1.10          load eds, 4.3.4
complex, 7.6          maps cell, 4.3.5
compound, 3.2.1.3, 7.21, 9.2          symmetry packing, 4.3.1
compress, 3.7.6          tools, 11.3.8
compressed, 9.1.6     cell, 2.5.5
     table view, 9.1.6     neigbor, 4.3.1
conditions, 7.5.2     neighbors, 2.5.5
conformational entropy, 7.24crystallography, 4.3.4, 4.3.6, 4.3.7
connect, 5.3.9.1, 5.12, 5.12.7csv, 7.2.3, 9.1.2, 9.1.3, 9.1.21
     object, 5.12.7current.slide, 6.13
connectivity, 7.4.3, 7.5.1curves, 9.4.5
construct, 2.5.1.1, 5.10.7.1custom, 5.12, 7.3.3
     molecule, 2.5.1.1     actions, 9.1.40
     object, 2.5.1.1     fragments, 7.12
contact, 4.5, 4.5.3, 11.3.5     label, 5.8.8
     surface, 5.3.2     rotation, 5.12.2
contacts, 5.3.3, 5.3.4, 7.6customized MPO score, 7.31.1
contour, 4.3.6, 4.3.7cut, 9.1.35
convert, 4.1.2, 7.19.4cys, 4.5.11
     chemical, 7.3.24cysteine reactivity, 4.5.11
          3D molecular editor, 7.4.16database, 7.9, 7.32.4, 10.1
     local database, 2.5.1.6decompose.library, 11.4.9
     pdb, 11.3.2decomposition, 7.32.4, 7.33.1, 9.4.25
     local.database, 2.5.1.6default, 3.1.13
     smiles, 7.19, 7.19.2, 7.19.3delete, 2.5.2.1, 3.6.6, 6.6.8
converting pdb, 4.1.2     all, 2.5.2.2
coordinates, 7.1.3     column row, 9.1.38
copy, 7.3.25, 7.4.11, 7.4.18, 7.5.6.2, 9.1.35     label, 5.8.9
     cell, 9.1.36     all, 2.5.2.2
     chemical, 7.3.25     angle.label, 5.9.4
     paste row, 9.1.35     column, 9.1.38
     label, 5.8.9     table, 7.3.3
     row, 9.1.38     tethers, 5.8.13
     selection, 2.5.2.1     wire, 5.1.1
dendrogram, 7.27.1     xstick, 5.1.2
density, 4.3.4, 4.3.6, 4.3.7distance, 4.5, 4.5.6, 5.8.10, 5.9, 7.28
depth, 5.3.12, 5.10.5     label, 3.7.7
dialog, 6.6.5distances, 2.6.3
diffuse, 2.6.2diverse set, 9.7
dihedral, 4.5.8, 5.8.5docking, 4.5.14
     angle, 4.5document, 6.6.4, 6.6.5
directories preferences, 3.7.2     navigation, 6.6.7
directory, 3.7documents, 5.15.3
dislay ligand receptor interaction, 7.6donator, 7.4.9
display, 3.1.4, 3.1.13.1, 3.7, 4.2.3, 4.2.3.1, 4.2.3.2, 5.8.15, 5.14, 7.22     envelope, 2.6.1
     chemical, 5.8.11     surface, 3.7.5
     delete distances, 5.9.4dotted line, 5.1.3
     dihedral, 5.9.3double, 7.4.10
     distance restraints, 5.8.14doublet, 7.4.7
     distance2, 5.9.1drag, 3.1.11, 3.7.7, 5.8.3, 6.6.4
          angles, 5.9     residue label, 2.5.3.16
     formal charge, 5.1.9draganddrop, 3.1.11
     gradient, 5.8.17draw, 7.4.18, 7.32.5
     hydrogen, 5.1.7     chemical, 7.4.1
     mesh, 5.3.5drop, 3.1.11, 6.6.4
     meshes, 5.3.8drug, 7.10
     planar angle, 5.9.2     bank, 3.2, 3.2.8, 7.1
     tab, 2.6.1     like, 7.10.4
     tether, 5.8.13drugbank, 7.1
     toggle, 5.8.16druglikeness, 7.4.9
     CPK, 5.1.5dsPocket, 3.1.8
     angle, 5.9.2easy rotate, 2.5.3.12
     chemical, 7.3.3edit, 4.2.3.1
     dihedral.angle, 5.9.3     add sequence, 7.4.17
     distance, 5.8.10, 5.8.14, 5.9.1     chemical moledit, 7.3.26
     electrostatic, 2.5.3.21     ligand tools, 2.5.2.17
     energy.gradient, 5.8.17     menu, 2.5.2
     hydrogen, 5.1.7     molecular document, 6.6.1
          polar, 5.1.7     molecule, 7.4
     macroshape, 5.3.6     molt, 10.3
     meshes, 5.3.5     selection, 2.5.2.5
          and display.macroshape, 2.6.6     slide, 6.4.1
     molecule, 7.3.24     table row, 9.1.24
     origin, 5.8.12     molecule, 7.3.26
     potential, 2.5.3.21     structure, 7.3.26
     representations, 2.6.1editpdbsearch, 2.5.2.12
     restraints, 5.8.14eds, 4.3.4, 4.3.6, 4.3.7
     ribbon, 5.1.3electron, 4.3.4, 4.3.6, 4.3.7
     skin, 5.1.4     denisty map, 4.3.5
     surface, 5.1.6, 5.3.1     density map, 2.5.1.7, 2.5.5, 4.3.4, 4.3.6
     surfaces, 2.6.6               contour, 2.5.5
     surface, 5.3     bak, 2.5.2.11
electrostatics, 5.3.1filter, 10.2
elegant sketch, 5.10.4     selection, 3.6.8
element, 7.4.10find chemical, 7.3.32
embed browser, 6.11fit, 7.3.34
     powerpoint03, 6.8fitting, 9.4.16
     powerpoint07, 6.9flexibility, 4.5.13
     powerpoint10, 6.10fog, 2.5.3.5, 5, 5.10.1
     activeicm, 6.13font, 3.7, 3.7.7, 4.2.3.1, 5.8.2, 5.8.3, 7.3.28, 9.1.40, 9.7.4
          script, 6.13     preferences, 3.7.7
     browser, 6.7, 6.11form view, 9.1.5
     firefox, 6.7, 6.11formal charge, 5.1.9, 7.14, 7.17
     internet.explorer, 6.7, 6.11format, 9.1.2, 9.1.40
     microsoft, 6.7formula, 7.4.9, 7.10
     powerpoint, 6.7, 6.8, 6.9, 6.10fragment, 7.3.35, 7.33.1
enamine, 7.5.5fragments, 7.7
energy, 4.5.12, 5.8.15, 7.24, 7.24.2free radical, 7.4.7
entropy, 7.16, 7.24.1     wilson regression analysis, 7.33.2
enumerate formal charge states, 7.17freeze column, 9.1.30
     reaction, 11.4.10     row, 9.1.31
enumeration, 7.32.4frequency, 7.3.35
eps, 7.2.6front, 5.3.10, 5.13.1
eraser, 7.4.11full scene antialias, 2.5.3.10
exact, 7.28     screen, 2.5.3.8
excel, 7.2.3function, 9.1.26, 9.1.32
exclude fragment, 7.5.2functional.groups, 7.12
exit, 2.5.1.19general preferences, 3.7.5
explicit, 7.3.28generalselecttools, 3.6.1
export, 4.5.10generator, 4.3.3
     pdb, 3.5getting started, 3
extra windows, 5.2giga search, 7.5.5
extract, 3.4.2, 7.1.3          enamine, 7.5.5
     2D, 7.1.1glasses, 5.6
     3d coordinates to spreadsheet, 7.1.3google, 2.5.1.7
     icb, 2.5.1.5     objects, 5.3.7
     object icb, 3.4.2     3D, 2.6.6, 5.3.7
     icb, 2.5.1.5graphical display tutorial, 11.1
     pharmacophore, 7.5.6.4               2D3D labels, 11.1.4
file, 2.5.1.3               annotation, 11.1.2
     close, 2.5.1.13               color representation, 11.1.1
     compatible, 2.5.1.10               labels, 11.1.3
     export, 2.5.1.12graphics, 3.1
     high quality image, 5.15.1     controls, 5
     load, 2.5.1.7     effects, 5.10
     menu, 2.5.1     panel, 5.2
     password, 2.5.1.11     preferences, 3.7.3
     preferences, 2.5.1.16     shadow, 2.5.3.13, 5.10.2
     quick image, 2.5.1.14grid, 7.3.3
     icb, 3.1.10grob, 3.7.5, 4.3.4, 4.3.6, 4.3.7, 5.3
     recent, 2.5.1.17group, 7.33.1
groups, 7.7, 7.10, 7.11          structure, 11.4.7
guanidinium, 7.14     merge tables, 7.3.23
gui, 3.1.1, 3.7.4     properties, 7.3.19
     menus, 2.5     reactions, 11.4.10
     preferences, 3.7.4     reorder, 7.25.3
     tabs, 2.6     sdf, 7.3.9
h-bond, 4.2.3, 4.2.3.1, 4.2.3.2     show hide, 7.3.8
halogen, 7.10.2     sort column, 7.3.5
hardware stereo, 2.5.3.7     standardize, 7.3.18
hbond, 4.2, 11.3.6     table hyperlinks, 7.3.15
header, 3.2.1.6, 9.4.9          print, 7.3.11
health, 4.5.12          activeicm, 2.3
heatmap, 9.4.7               create molecular documents, 2.3.3
     example, 9.4.7.1                    slides, 2.3.2
help, 1               getting started, 2.3.1
     videos, 1               ppt, 2.3.4
hetero, 7.3.28               web, 2.3.5
hide, 9.1.39          chemical clusering, 7.25.1
     column, 9.1.28          icm browser convert display pocket, 2.1.4
high, 2.5.1.15                    distances angles, 2.1.9
     quality, 2.5.3.11                    get started, 2.1.1
highlight new data, 7.3.7.1                    graphical display, 2.1.2
histogram, 9.4, 9.4.1, 9.4.9, 9.4.11, 9.4.13, 9.4.14, 9.4.15, 9.4.16, 9.4.17, 9.4.18, 9.4.20, 9.4.22                         effects, 2.1.5
     bins, 9.4.3                    images, 2.1.7
     options, 9.4.2                    labels annotation, 2.1.6
     bin.size, 9.4.2                    pro crystallographic tools, 2.2.6
     bins, 9.4.3                         get started, 2.2.1
     color, 9.4.2                         graphics, 2.2.2
     source, 9.4.2                         plots, 2.2.8
     style, 9.4.2                         sequence analysis, 2.2.7
     title, 9.4.2                         structure analysis, 2.2.3
historeceptomics, 3.2.10                         superimpose, 2.2.5
hitlist, 8.4                         surfaces, 2.2.4
homology, 3.2.1.2, 3.2.5                    selections, 2.1.3
hover, 9.4.26                    superimpose, 2.1.8
     add columns, 7.3.4          search, 3.2
     cluster center, 7.25.2          use gui, 3.1
     color 2D by ph4, 7.5.6.5html, 2.5.1.12, 3.3, 6.6.1, 6.6.7
     copy 2D, 7.3.16hybridization, 7.4.3, 7.5.1
          paste, 7.3.6hydrogen, 4.2.3, 4.2.3.1, 4.2.3.2, 5.1.8, 7.4.3, 7.5.1, 11.3.6
     decompose, 11.4.9     bond, 4.2, 5.1.8, 7.6, 11.3.6
     duplicate chemicals, 7.3.21          label edit, 4.2.3.1
     edit table, 7.3.17               move, 4.2.3.2
          tree, 7.25.4     bonds, 4.2.4
     excel, 7.3.10     bond, 7.4.9
     extract 3D ph4, 7.5.6.4hydrogens, 7.3.28
     filter, 7.3.12     remove, 7.3.18
     find replace, 7.3.13hyperlink, 6.6.1, 6.6.2, 9.1.40
     mark row, 7.3.14iSee, 2.5.1.5, 2.5.1.12, 3.1.10, 5.15.3, 11.2
     markush, 11.4.8icb, 3.4.2, 3.5
               cluster, 2.4.5label, 3.7.7, 9.7.4
               combi library, 2.4.7     atoms, 5.8.2
               ph4, 2.4.4     color, 5.8.7
               plots, 2.4.8     move, 5.8.4
               sketch, 2.4.1     residues, 5.8.3
               spreadsheets, 2.4.2     sites, 5.8.6
               stereoisomers tautomers, 2.4.6     variables, 5.8.5
          tutorials, 2.4     2D, 2.6.3
     object, 4.1, 11.3.2     3D, 2.6.3, 5.8.1
     script, 9.1.40     atom, 5.8.1
icmPocketFinder, 4.5.15     atoms, 5.8.2
icmjs, 6.16     color, 5.8.7
icmpocketfinder, 11.3.7     custom, 5.8.8
id, 9.1.27     delete, 5.8.1, 5.8.9
identity, 3.2.1.2     distance, 5.8.10
image, 3.1.14, 3.7, 3.7.5, 5.15.3, 6.6.3, 7.2, 7.2.6, 9.4.21     drag, 2.5.3.16
     advanced, 5.15.3     move, 2.5.3.16, 5.8.4
     preferences, 3.7.6     residue, 5.8.1
     multiple, 2.5.1.7     residues, 5.8.3
     quality, 2.5.3.11     site, 5.8.1
     quick, 2.5.1.14, 5.15.2     sites, 5.8.6
images, 5.15     variable, 5.8.1
inchi, 7.19.2     variables, 5.8.5
increment, 9.1.27labeling, 5.8.1
     id, 9.1.27labels, 5.8, 7.3.28
insert, 6.6.4     distances, 5.8.10
     column, 9.1.26     tab, 2.6.3
     image, 6.6.3, 9.1.34landscape, 3.7.6
          table, 9.1.34large chemical space, 11.4.4
     row, 9.1.33     sdf, 7.1.2
     script, 6.6.4layer, 5.14
install, 7.9.1layers, 5.14
interaction, 4.5.3, 7.6learn, 7.20, 9.6
interactive, 11.2least.squares, 9.4.16
interrupt, 5.10.7.3library, 7.32.4
     animation, 5.10.7.3     reaction, 11.4.10
invert selection, 9.1.23ligand, 4.2.2, 7.6, 7.24, 7.24.1, 7.24.2
iqr, 9.4.23     code, 3.2.1.3, 3.2.7
isee, 6.6.5     editor preferences, 2.5.2.18
isis, 7.4.18     energetics, 7.24
isotope, 7.4.3, 7.5.1          conformational entropy, 7.24.1
iupac, 7.2.7, 7.3.20          strain, 7.24.2
javascript, 6.16     pocket, 4.2.4
join, 7.29     receptor display, 4.2
jpg, 5.15          interaction, 7.6
     means, 9.7.1     surface, 4.2.2
key chemical, 7.4.10     pocket, 3.1.8
keyboard mouse, 5.11     receptor.contact, 4.5.3
keystokes in chem-edit, 7.4.10ligand_pocket_interactions, 4.2.4
kmz, 2.6.6, 5.3.7ligedit tab, 2.6.5
     tab, 2.6.2maximum common substructure, 7.25.6, 7.27, 7.27.1
lighting, 5.3.9.4, 5.5               dendrogram, 7.27.1
likeness, 7.10mcs, 7.25.6, 7.27.1
line, 3.7.5, 9.7.4     rgroup decomposition, 7.25.7
lineWidth, 3.7.3mean, 9.4.6, 9.4.23
links, 3.6.20median, 9.4.6, 9.4.23
linux, 7.9.1membrane, 8.3
lipinski rule, 7.31memory, 7.1.2
list, 3.6.18menu, 6.6.5
load, 2.5.1.3, 2.5.1.17, 4.3.4, 4.3.6, 4.3.7     chemistry, 2.5.14
     nmr model, 3.2.1.4     docking, 2.5.15
     protein structure, 4.1.1     homology, 2.5.13
local databases, 10     molmechanics, 2.5.16
     database.browse, 10.2     tools chemical search, 2.5.11
          edit, 10.3          molecular editor, 2.5.12
          query, 10.4     windows, 2.5.17
          row, 10.3merge, 7.29
lock, 5.3.10, 5.13.1, 7.3.31     two sets, 7.29
log, 9.4.6, 9.4.11mesh, 4.2.1, 4.2.2, 4.3.4, 4.3.6, 4.3.7, 5.3, 5.3.9.1, 5.3.9.2, 5.3.9.4, 5.3.10, 5.3.11, 5.3.12, 5.13.1
logD, 7.10.6     clip, 5.3.10
logP, 7.4.9, 7.10     color lighting, 5.3.9.4
logS, 7.4.9, 7.10     options, 5.3.9
logarithmic, 9.4.11     representation, 5.3.9.3
logout, 2.5.1.19     save, 5.3.11
mac, 7.9.1     options, 5.3.9
macros, 6.14meshes, 5.3.2, 5.10.5
macroshape, 2.5.3.22, 5.3, 5.3.6     surfaces grobs, 5.3
make, 5.10.7.1, 9.1.1     tab, 2.6.6
     animation, 5.10.7.1min, 9.7.1
     molecular document, 6.6mmff, 7.4.16
     molt, 10.1     type, 5.8.2
     selection, 3.6mmp, 11.4.11
     molecule, 2.5.1.1mnSolutions, 3.7.10
     object, 2.5.1.1mol, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.4.13
making molecular slides, 6.1mol2, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6
     html, 6.6molcart, 7.9, 7.9.1, 7.9.2, 7.9.3, 7.9.4, 7.9.5, 10
map, 3.7.7, 4.3.4, 4.3.6, 4.3.7     add database, 7.9.3
     cel, 4.3.5     administration, 7.9.5
mark, 9.1.45     installation, 7.9.1
     row, 9.1.45     search, 7.9.4
     color, 9.4.14     start, 7.9.2
     shape, 9.4.13molecular, 7.3.30, 7.3.31, 7.3.34, 7.3.35
     size, 9.4.13     animations slides, 6
markush, 7.25.7, 7.32.1, 7.32.3, 7.33.1     documents, 11.2
     library, 11.4.8     dynamics, 8, 8.1, 8.2, 8.3, 8.4
matched pair, 7.33.6, 11.4.11          membrane, 8.3
          analysis, 7.33.6          restraints, 8.2
materials, 2.6.6          run, 8.1
max, 9.7.1          vls, 8.4
maxColorPotential, 3.7.10     graphics, 5
     table, 7.19.1obj, 5.7
     weight, 7.4.9object, 3.1.11, 3.5, 11.3
     editor, 7.4objects, 4.1.2
moledit, 7.4.8     in table, 9.3
molskin, 5.3.2     in.table, 9.3
molsynth, 7.10.5occlusion, 5.3.12, 5.10.5
molt, 10, 10.4     shading, 5.3.12
monochrome, 7.3.28          effect, 5.10.5
mouse, 3.1.3, 5.11, 5.12occupancy, 5.1.3, 11.3.10
mov, 5.16, 5.16.2     display, 3.2.1.5
move, 2.5.3.19, 3.1.11, 3.1.13, 4.2.3.2, 5.3.9.1, 5.3.9.2, 5.12, 5.12.7oda, 4.5.14
     column, 9.1.28older version, 2.5.1.10
     mesh, 5.3.9.2omega, 5.8.5
     slide, 6.4.2online databases, 7.5.5
     structure, 5.12open, 2.5.1.3, 3.4, 9.1.2
     tools, 5     file, 3.4
     rotate, 5.11     password, 3.4.1
     slab, 5.11     with password, 2.5.1.4
     translate, 5.11     movie, 5.16, 5.16.2
     z-rotation, 5.11     password, 2.5.1.4, 3.4.1
     zoom, 5.11optimal, 4.5.14
movie, 5.16.1orange, 3.6.5
     making, 5.16, 5.16.2     selection, 3.6.5
     open, 5.16, 5.16.2origin, 5.8.12
mpa, 11.4.11orthosteric, 4.5.15
mpeg, 5.16, 5.16.1, 5.16.2other selection, 3.6.19
mpg, 5.16, 5.16.2overlay, 11.3.3
mpo, 7.31pH, 7.18
     binary classification, 7.31.2package.activeicm, 6.13
     custom step function, 7.31.1.2packing, 4.3.1
     customized, 7.31.1password, 7.9.5
     save, 7.31.1.3paste, 7.4.11, 7.4.18, 9.1.35
     special cases, 7.31.1.1pca, 9.5
mtl, 5.7pdb, 2.5.1.7, 3.2, 3.2.1.1, 3.2.7, 3.5, 11.3
multi panel, 5.2     dormat, 3.5
     parameter optimization, 7.31     html, 3.2.1.6
     windows, 5.2     preparation, 11.3.11
multiple receptor, 3.2.2     search, 3.2.1, 3.2.1.2, 3.2.1.3, 11.3.1
navigate workspace, 3.6.10     recent, 2.5.1.18
neural network Torsion Profile Neural Network Prediction Engine, 5.12.6.1     search, 2.6.4, 3.1.2
     icm session, 2.5.1.2pdbsearchfield, 2.5.2.13
     table, 9.1.1pdbsearchhomology, 2.5.2.15
     table, 9.1.1pdbsearchidentity, 2.5.2.14
nmr model, 3.2.1.4pdbsearcsequence, 2.5.2.16
nntorsion, 5.12.6.1peptide, 3.3
nof, 7.10.2perspective, 2.5.3.9, 5.10.6
     chemical, 7.10.2ph4, 7.5.6
non-contiguous selection, 3.6.18     draw 2d, 7.5.6.1
number of sp3, 7.10.2          3d, 7.5.6.2
numbers, 7.3.28     search, 7.5.6.3
     2D, 11.4.6     surface, 4.2.1
     3D, 11.4.5     peptide, 3.1.8
     clone, 7.5.6.2     properties, 3.1.8
     draw2D, 7.5.6.1pocketome, 3.2, 3.2.2, 4.7
     draw3D, 7.5.6.2pockets, 4.5.15
     edit, 7.5.6.1, 7.5.6.2point label, 9.4.19
     move, 7.5.6.2portait, 3.7.6
     new, 7.5.6.2postscript, 3.7.6
     search, 7.5.6, 7.5.6.3, 11.4.5, 11.4.6ppt, 6.12, 6.14
phi, 5.8.5predict, 7.20, 9.6
pi, 4.2.5preferences, 3.7
     cation, 4.2.5presentation, 6.6.5, 6.7, 6.12
     pi, 4.2.5presentations, 6
picking, 5press-and-hold to rotate, 7.4.8
picture, 2.5.1.14, 3.1.14, 5.15.2, 6.6.3primary aliphatic amines, 7.14
     tips, 3.1.14principal component analysis, 9.5
     chart, 9.4.8print, 5.7, 9.4.20, 9.7.3
pipi, 4.2.5     plot, 9.4.20
pka, 7.14printer.resolution, 3.7.6
planar, 4.5.7, 5.8.5pro-drug, 7.23
     angle, 4.5prodrug, 7.23
     angle, 5.9.2profile, 3.2.10
plane, 5.3.10, 5.13, 5.13.1, 5.14project, 2.5.1.5, 11.4.4.6
plot, 3.7, 3.7.8, 9.4, 9.4.1, 9.4.4, 9.4.9, 9.4.11, 9.4.13, 9.4.14, 9.4.15, 9.4.16, 9.4.17, 9.4.18, 9.4.20, 9.4.21, 9.4.22, 9.4.23     close, 2.5.1.13
     R group sar, 7.33.4     rename, 2.5.1.9
     axis, 9.4.11properties, 5.8.2, 7.10, 7.10.1
     color, 9.4.14property, 7.4.9
     columns, 9.4.6     monitor, 7.4.9
     function, 2.5.9, 2.5.9.1protect, 6.6.8
     grid, 9.4.15protein, 4.4.6
     header, 9.4.9     health, 4.5.12
     inline, 9.4.22     sequence, 7.4.17
     logarithmic, 9.4.12     structure, 4
     mark, 9.4.13          analysis, 4.5
     mean median iqr, 9.4.23               closed cavities, 4.5.4
     point label, 9.4.19               contact areas, 4.5.3
     preferences, 3.7.8               distance, 4.5.6
          groups, 9.4.25               find related chains, 4.5.1
     regression, 9.4.16               finding dihedral angle, 4.5.8
     selection, 9.4.18                    planar angle, 4.5.7
     zoom translate, 9.4.17               rama export, 4.5.10
     axis, 9.4.15               ramachandran plot, 4.5.9
     display, 9.4.15               rmsd, 4.5.2
     grid, 9.4.15               surface area, 4.5.5
     inline, 9.4.22          similarity, 4.6
     logarithmic, 9.4.12          tutorials, 11.3
pls, 7.20, 9.6               analysis, 11.3.4
png, 2.5.1.14, 5.15, 5.15.2, 6.6.3, 7.2, 7.2.6               contact area, 11.3.5
pocket, 3.1.8, 4.2, 4.2.1, 4.2.2, 4.5.15, 11.3.7               convert, 11.3.2
     properties, 4.7               hydrogen bond, 11.3.6
               search, 11.3.1ratio.selection, 3.7.5
               superimpose, 11.3.3reactions, 7.7, 7.32.5
     superposition, 4.4reactive cysteine, 4.5.11
          select, 4.4.1reactivity, 7.10.3
          sites by apf, 4.4.6read, 2.5.1.3, 2.5.1.17, 3.4, 7.3.1
          superimpose 3D, 4.4.3     chemical, 7.1
               grid, 4.4.5          spreadsheet, 7.3.1
               multiple proteins, 4.4.4     table, 9.1.2
protein-protein, 4.5.14     pdb, 3.1.2
protonation, 7.18     table, 9
protonation_ph, 7.18reagent, 7.32.5
protonation_ph_charge, 7.18.2rear, 5.3.10, 5.13.1
protonation_ph_concentration, 7.18.1recent files, 2.5.1.17
proximity, 5.3.3, 5.3.4     pdb codes, 2.5.1.18
psa, 7.4.9, 7.10.7receptor, 4.2.1, 4.2.2, 7.6
psi, 5.8.5recover, 2.5.2.11
pubchem, 7.1redo, 2.5.2.10, 7.4.11
publication quality images, 5.3.2regression, 7.33.2, 9.4.16
pubmed, 3.2.1.7relationship, 9.6
purple box, 2.5.3.23remove.explixit.hydrogens, 7.11
qs hydrogen bond, 4.2.3     salt, 7.11
qsar, 7.20rename, 9.1.25
     predict, 7.20     column, 9.1.25
quality, 2.5.1.15, 3.7.5     project, 2.5.1.9
query molt, 10.4reorder column, 9.1.29
     processing, 7.5.3replace chemical, 7.3.32
     setup, 7.5.1representation, 2.5.3.19
quick, 3.1.14residue, 3.7.7
     image, 5.15.2     alternative orientation, 11.3.11
     start move structure, 3.1.3     range, 3.6.18
          read pdb, 3.1.2     content, 2.5.4
          representation, 3.1.6residues, 4.2.1, 4.2.2
          selection, 3.1.5resize, 5.3.9.1, 5.15.3
               level, 3.6.3     mesh, 5.3.9.1
          what is selected, 3.6.4resolution, 3.2.1.3
     display.distance, 5.9.1restore, 2.5.2.11, 5.3.10, 5.13.1
     start color, 3.1.7     recent backup, 2.5.2.11
quit, 2.5.1.19restraints, 8.2
     group, 7.25.7, 7.32.4rgroup, 7.32.4
          table, 7.32.2ribbon, 2.6.1, 3.7.9, 5.1.3
     groups, 7.32.2     preferences, 3.7.9
r-group, 7.25.7, 7.32.2     style, 3.7.9
     decomposition, 7.25.7     breaks, 5.1.3
     enumeration, 7.25.7     cylinders, 5.1.3
r-groups, 9.4.25     smooth, 5.1.3
racemic, 7.3.28, 7.19.4     worm, 5.1.3
radar, 9.4.6ribbonColorStyle, 3.7.9
rainbow, 3.7.5, 5.8.16, 7.3.35right, 3.1.12
ramachandran plot, 4.5, 4.5.10     click, 3.1.12
range, 5.10.7.2ring, 4.2.5, 7.4.3, 7.4.6, 7.5.1
rings, 7.3.28saving, 2.5.1.8
rmsd, 4.5, 4.5.2     project, 2.5.1.8
rock, 2.5.3.15, 5.10.7, 5.10.7.1, 6scaffold, 7.13
     speed, 5.10.7.2scale, 3.7.5
root mean square deviation, 4.5.2scan_pockets, 4.7
rotate, 2.5.3.15, 3.1.3, 5, 5.10.7, 5.10.7.1, 5.12, 5.12.1, 5.12.2, 6, 7.3.34screening, 8.4
     chemical, 7.3.34screenshot, 5.16, 5.16.2
     torsion, 5.12.6.1     movie, 5.16.2
     when pasting, 7.4.8script, 3.3, 6.6.4, 6.6.5
     easy, 2.5.3.12sdf, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.3.35, 7.9, 7.9.3, 10.1
     speed, 5.10.7.2search, 4.6, 7.9, 7.9.4, 10.2
rotating fragment in editor, 7.4.8     chembl, 3.2.3
rotation, 5.12.1     drugbank, 3.2.8
row, 9, 9.1.22, 9.1.35, 9.1.45     filter, 7.5.2
     flag, 9.1.13     in workspace, 2.5.2.4
     height, 9.1.7     pdb, 3.2.1
     mark, 9.1.13          chemical, 3.2.1
     hide, 7.3.8          ligand code, 3.2.7
     show, 7.3.8     pocketome, 3.2.2
ruler, 5.8.16     pubchem, 3.2.9
rxn, 7.4.13     surechembl, 3.2.4
sali, 7.33.5     tab field, 3.2.1.3
     bridge, 11.3.6          pdb chemical, 3.2.1.1
salts, 7.3.18               sequence, 3.2.1.2
sar, 7.25.7, 7.33, 9.4.25     tautomer, 7.5.3
     analysis, 7.33     uniprot, 3.2.6
     table, 7.33.3     in.workspace, 2.5.2.4
save, 3.5, 5.3.11, 5.10.7.4, 7.2.3, 9.4.21, 9.7.3secondary aliphatic amines, 7.14
     SMILES, 7.4.15     structure, 2.5.4, 5.1.3
     as PDB, 3.5select, 3.6.12, 3.6.13, 9, 9.1.45
          pdb, 3.5     a tree branch, 9.7.2
     chemical mol, 7.4.13     all, 3.6.14
          spreadsheet workspace, 7.2.1     amino acid, 3.6.13
          to chemical spreadsheet, 7.4.14     duplicates, 7.30
     file, 3.5     molecule, 3.6.12
     image plot, 9.4.21     neighbors, 3.6.15
     object, 3.1.9          graphic, 3.6.16
     pdb, 3.5     object, 3.6.11
     project icb, 3.1.10     residue, 3.6.13, 3.6.18
     slide, 6.4          by number, 3.6.18
     smiles string, 7.4.15          number, 3.6.18
     table, 9.1.21     tree, 9.7.2
     tree, 9.7.3     atom, 3.1.5, 3.6.3
          sdf, 7.4.14     graphical, 3.1.5, 3.6.3
     image, 2.5.1.15, 3.1.14     object, 3.1.5, 3.6.3
     object, 3.1.9     purple.box, 2.5.3.23
     password, 2.5.1.11     residue, 3.1.5, 3.6.3
     picture, 2.5.1.15     workspace, 3.1.5, 3.6.3
     project, 2.5.1.8, 2.5.1.9, 2.5.1.10, 3.1.10selectall, 2.5.2.3
     table.view, 9.1.8selecting.neighbors, 3.6.16
     clear, 2.5.2.7sigmaLevel, 4.3.6, 4.3.7
     neighbors, 2.5.2.8similarity, 7.28
     alignment, 3.6.19simulation, 8, 8.1, 8.2, 8.3, 8.4
     all, 2.5.2.3single, 7.4.10
     alter, 3.6.7singlet, 7.4.7
     atom, 2.5.2.5sites, 4.4.6
     basic, 3.6.2size, 4.2.3.1
     change, 3.6.7sketch accents, 5.10.3
     clear, 2.5.2.7     markush, 7.32.1
     column, 9.1.23     smiles, 7.4.12
     filter, 2.5.2.5, 3.6.8     accents, 2.5.3.14, 5.10.3
     graphical, 3.6.16skin, 2.6.1, 5.1.4
     invert, 2.5.2.6, 9.1.23slab, 5.3.10, 5.13.1
     level, 2.5.3.3slice, 5.13
     mode, 2.5.3.4slide, 5.10.7.4, 6.2, 6.3.1, 6.6.1
     near atoms, 2.5.2.8     effects, 6.5
     neighbors, 2.5.2.5, 2.5.2.8, 3.6.15, 3.6.17     movie, 5.16.1
     object, 3.6.11          file, 6.2
     other, 3.6.19     navigation, 6.3.2
     properties, 2.5.2.5     show, 6.3
     range, 9.1.23     blend, 6.5
     residue, 2.5.2.5     edit, 6.4.1
     row, 9.1.23     effect, 6.5
     sphere, 3.6.15     smooth, 6.5
     spherical, 2.5.2.8     transition, 6.5
     superposition, 4.4.1slides, 5.16.1, 6, 6.1, 6.3
     table, 3.6.19, 9.1.23smiles, 7.4.9, 7.10, 7.19, 7.19.2, 7.19.3
          elements, 9.1.23smooth, 5.3.9.3
     tools, 3.6.1, 3.6.2, 3.6.7, 3.6.8solid, 5.3.9.3
     whole, 3.6.11sort table, 2.5.10.4
     workspace, 3.6.9, 3.6.17sorting compounds, 9.7
selectioninvert, 2.5.2.6sp3, 7.10.2
selections, 3.6spec, 2.6.2
selectneighbors workspace, 3.6.17speed, 5.10.7.2
     organized network, 7.27split, 7.33.1
sequence, 2.5.4, 3.2, 3.2.1.2, 3.2.5, 3.2.6, 3.3, 7.4.17, 11.3spreadsheet, 7.19.1
     pattern, 3.2.1.2stacking, 4.2.5
set, 7.3.31standard table, 9.1
     formal charges, 7.14standardize, 7.11
shading, 5.3.12     table, 7.11
shadow, 5.10.2start, 7.9.2
shell preferences, 3.7.10stereo, 3.7.6, 5.6, 7.3.28, 7.4.2
shift, 5.8.3     bond, 7.4.2
shine, 2.6.2, 3.7.5     hardware, 2.5.3.7
shineStyle, 3.7.3     side-by-side, 2.5.3.6
show, 6.3.1, 9.1.39stereoisomer, 7.19.4
     hide column, 9.1.39stereoisomers, 7.22
side, 7.3.29stick, 3.7.5
     by side, 7.3.29stl, 5.7
               stereo, 2.5.3.6stop, 5.10.7.3
     current view, 2.5.3.19     new column, 9.1.26
strain, 4.5.12, 5.12.6.1, 7.16, 7.24, 7.24.2     plot, 9.4
structure, 4.3.3, 9.6, 11.3     print, 9.1.19
     analysis, 11.3.4     rename, 9.1.15
     representation, 5.1     rightclick, 9.1.14
     smiles, 7.19.3     save, 9.1.3
structures, 7, 7.1          selection, 9.1.3
style, 3.7.5     search, 9.1.9
substituent, 7.8.1, 7.8.2, 7.32.2     select, 9.1.23
substructure, 7.9.4, 7.12     setup, 9.1.18
     alerts, 7.12     sort, 9.1.42
superimpose, 2.5.8, 4.4.2, 4.4.6, 11.3.3     split fragments, 7.3.33
     3D, 4.4.3     view, 9.1.5
     Calpha, 4.4.3          save, 9.1.8
     arrange.grid, 4.4.5     zoom translate, 7.3.30
     backbone, 4.4.3     action, 9.1.47
     heavy atoms, 4.4.3     alignment, 9.1.12
     multiple, 4.4.4     append, 9.1.43
superposition, 11.3.3     clone, 9.1.16
surface, 2.6.1, 3.7.5, 4.2.1, 4.2.2, 5.1.6, 5.3, 5.3.3, 5.3.4     color, 9.1.10
     area, 4.5     column, 7.3.4, 9.1.26, 9.1.32, 9.1.39
     area, 4.5.5     columns, 7.3.8
surfaces, 4.2, 5.3.1, 5.3.2, 5.10.5     compare, 7.3.22
symmetry, 4.3.1, 4.3.3, 11.3.8, 11.3.9     copy, 7.3.6
synthesize, 7.10.5     cursor, 9.1.47
synthetic feasibility, 7.10.5     delete, 9.1.14, 9.1.17
system preferences, 3.7.11     double.click, 9.1.47
tab, 9.1.2, 9.1.21     edit, 7.3.17
     pdb, 2.6.4     excel, 7.3.10, 9.1.20
table, 3.3, 7.1.3, 7.3.24, 7.3.25, 7.3.28, 7.3.30, 7.3.31, 7.3.34, 7.3.35, 7.19.1, 9, 9.1.6, 9.1.35, 9.1.40, 9.1.45, 9.4, 9.4.1, 9.4.4, 9.4.9, 9.4.11, 9.4.13, 9.4.14, 9.4.15, 9.4.16, 9.4.17, 9.4.18, 9.4.20, 9.7.1     filter, 7.3.12, 9.1.43
     alignment, 9.1.12     find-replace, 7.3.13
     clone, 9.1.16          to screen, 9.1.4
     color, 9.1.10     font, 9.1.11
     column format, 9.1.40     grid lines, 9.1.4
     copy, 9.1.36, 9.1.37     hide, 9.1.39
     delete, 9.1.17     hyperlink, 7.3.15
     edit, 9.1.24     insert, 9.1.33
     filter, 9.1.43     join, 2.5.10.5
     find, 9.1.9     label, 7.3.14
          replace, 7.3.32     landscape, 9.1.18
     font, 9.1.11     mark, 7.3.14
     grid, 9.1.5     merge, 2.5.10.5, 7.3.23, 7.29
     histogram, 9.4.1     mouse, 9.1.47
     insert, 9.1.26     name, 9.1.15
     layout, 9.1.5     new, 9.1.1
     learning, 9.6     options, 9.1.14
     mark, 9.1.13     orientation, 9.1.18
          row, 9.1.13     portrait, 9.1.18
     mouse, 9.1.47     print, 7.3.11, 9.1.4, 9.1.19
     navigation, 9.1.4     read, 9.1.2
     right click, 9.1.14translate, 3.1.3, 5, 5.12, 7.3.30
     row, 9.1.33translation, 5.12.3, 9.4.17
     rows, 2.5.10.7transparent, 5.3.9.3
     save, 7.3.9, 9.1.3, 9.1.4, 9.1.21     background, 5.15.3
     scale, 9.1.18tree, 7.25.7, 9.7.2, 9.7.3, 9.7.4
     scroll, 9.1.4     distance, 7.25.3
     sdf, 7.3.9     edit, 7.25.4
     select, 9.1.23     reorder, 7.25.3
     setup, 9.1.18triplet, 7.4.7
     sort, 2.5.10.4, 7.3.5, 9.1.42tsv, 9.1.21
     standard, 9.1tut analyze alternative orientations, 11.3.11
     view, 7.3.29          occupancy, 11.3.10
     width, 9.1.4          symmetry, 11.3.9
tables, 7.28, 9tut3e, 11.3.12
tag, 3.6.21, 9.1.46tutorial 2D pharmacophore, 11.4.6
tags, 3.6.21     3D pharmacophore, 11.4.5
tautomer, 7.21     chemical clustering, 11.4.3
tautomers, 7.21          search, 11.4.2
temperature, 4.5.13     molecular documents, 11.2
template, 7.4.6tutorials, 11
templates, 7.4.6two, 7.3.24
terminal, 7.3.28unclip, 5.3.10, 5.13.1
text, 3.7.7, 6.6, 6.6.1, 6.6.7, 7.3.28, 7.9.4, 9.4.24undisplay, 3.1.4, 5.1.7
     search, 7.5.4undisplay-all, 2.5.3.1
texture, 2.6.6     origin, 5.8.12
three, 7.3.24undo, 2.5.2.9, 3.7, 7.4.11
threshold, 3.7.5uniprot, 3.2.6
tier, 3.1.13unique, 7.3.28, 7.30
tissue, 3.2.10unit, 4.3.3
     racemic, 7.19unusual peptide, 3.3
tools 3D, 2.5.6     activeicm, 6.12
     analysis, 2.5.7user, 7.9.5
     append rows, 2.5.10.7user-defined groups, 7.4.5
     extras, 2.5.9van der waal, 5.8.15
          plot function, 2.5.9.1variable, 3.7.7
     superimpose, 2.5.8very large sdf files, 7.1.2
     table, 2.5.10video, 1, 5.16, 5.16.1, 5.16.2
          Learn, 2.5.10.1view, 2.5.3.19, 6.3.1, 7.3.28
          clustering, 2.5.10.3     animate view, 2.5.3.15
          merge, 2.5.10.5     center, 2.5.3.20
          predict, 2.5.10.2     color background, 2.5.3.18
tooltip, 9.4.26     fog, 2.5.3.5
     balloons, 9.4.26     macroshape, 2.5.3.22
torsion, 5.12.6, 5.12.6.1, 7.16     menu, 2.5.3
     analysis, 7.15     mesh clip, 5.13.1
     angles, 5.12, 5.12.6     perspective, 2.5.3.9
     free strain, 7.16     selection level, 2.5.3.3
toxscore, 7.10.3          mode, 2.5.3.4
trace, 5.1.10     shadow, 2.5.3.13
transitions, 6     sketch accents, 2.5.3.14
     tools, 2.5.3 
     tree, 9.7.4 
     undisplay all, 2.5.3.1 
virus, 4.3.3 
visualize, 7.27 
     chemical space, 7.27 
vls, 8.4 
volume, 7.4.9 
wavefront, 2.6.6, 5.3.11, 5.7 
web, 11.2 
     browser, 2.5.1.12 
weight, 7.10 
weighted, 9.7.1 
width, 9.1.22 
window, 3.1.13 
windows, 3.1.13.1, 7.9.1 
wire, 2.6.1, 3.7.5, 5.1.1 
wireBondSeparation, 3.7.1 
workspace, 3.1.4 
     panel, 3.1.4 
     selection, 3.6.9 
     navigation, 3.6.10 
write, 3.1.14, 3.5, 9.4.21 
     excel, 7.2.3 
     image, 2.5.1.15 
     images, 5.15 
     pdb, 3.5 
     image, 2.5.1.15 
     object, 3.1.9 
     picture, 2.5.1.15 
     project, 2.5.1.8, 3.1.10 
     table, 9.1.3 
     ray, 2.5.5 
xi, 5.8.5 
xls, 7.2.3 
xlsx, 7.2.3 
xstick, 5.1.2 
youtube, 1 
zoom, 3.1.3, 5, 5.12, 5.12.4, 7.3.30, 9.4.17 

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