slides |
Amino Acids by Polarity; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 2evu[at=1978,re=375] 3zoj[at=4553,re=481]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
secondary sturcture; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 2evu[at=1978,re=375] 3zoj[at=4553,re=481]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Subunits; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
asdf; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Rotation; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 2evu[at=1978,re=375] 3zoj[at=4553,re=481]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Critical Residues (Exercise3); objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
SF waters; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Ligands; objects: 2evu_copy[at=1978,re=375] 2evu[at=1978,re=375] 3zoj[at=4553,re=481]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
binding pocket; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Critical residues (Exercise5); objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
NPA water; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Critical residues 3 (Exercise5); objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Gating loop interactions; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Superimpose; objects: 2evu_copy[at=1978,re=375] 2evu[at=1978,re=375] 3zoj[at=4553,re=481]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Side By Side; objects: 2evu_copy[at=1978,re=375] 2evu[at=1978,re=375] 3zoj[at=4553,re=481]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921]; distance: pocket_hbonds[1][full,pair=0,ob=0] |
Compare 2W1P; objects: 3zoj_1[at=4553,re=481] 2evu_copy[at=1978,re=375] 3ne2[at=14238,re=1993] 2evu[at=1978,re=375] 2w2e[at=2339,re=415] 3zoj[at=4556,re=481] 2w1p[at=2295,re=402]; grobs: g_3zoj_a[p=1533,l=3,t=2921] g_3zoj_a_1[p=1533,l=3,t=2921] g_3zoj_a_2[p=1801,l=10,t=3362]; distance: pocket_hbonds[1][full,pair=0,ob=0] |