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In this chapter we describe how to work with protein structures. We describe how to read them into ICM and display key features of the structure such as the ligand binding pocket and hydrogen bonds. We also teach how to convert a PDB file into an ICM object which is a critical operation if you want to perform any energy related task such as docking, displaying h-bonds etc...
Chapter Contents:
- Searching the PDB
- Converting PDB Files into ICM Objects
- How to Edit and Convert a Chemical from the PDB into an ICM Object
- How to Display the Ligand Binding Pocket Surface and Neighboring Residues
- How to Display Hydrogen Bonds
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