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Apr 28 2020
Feedback.
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Index
| 2D, 6.8.8, 10.3.24, 10.3.28, 10.14, 10.17.2, 10.17.4 | DNA, 4.3, 8, 8.3.3 |
| Interaction Diagram, 15.3.7 | Decomposition, 10.33.3 |
| bioisostere, 10.9.1 | Display, 21.2.26 |
| from PDB, 10.1.1 | Distance, 13.1.10.6 |
| screening, 14 | Dock Directory, 4.7.2 |
| to 3D, 10.17, 10.17.3 | Docking, 21.2.26 |
| depiction, 10.17.2 | Drug Bank, 4.2.8 |
| 3D, 6.6, 6.8.8, 10.1.3, 10.3.24, 10.3.28, 10.3.31, 10.17.2, 20.2 | Editor, 4.7.2 |
| QSAR, 10.36.4, 11.4, 20.14 | Error in saving configuation settings: You are not a license administrator, 21.1.10 |
| chemical, 10.4.16, 10.17.1 | FILTER.Z, 4.7.2 |
| interactive ligand editor, 3.7.5 | gz, 4.7.2 |
| ligand editor, 15.3.4 | uue, 4.7.2 |
| object, 6.3.9 | FTP.createFile, 4.7.11 |
| pharmacophore, 13.3, 15.3.11 | keep File, 4.7.11 |
| print, 6.7 | proxy, 4.7.11 |
| printing, 6.7 | Filter.zip, 4.7.2 |
| screening, 14 | Force Auto Bond Typing, 4.7.11 |
| stereo, 6.6 | Formula, 21.8.7, 21.8.10 |
| 3DQsar, 11.4 | Free Wilson, 10.33.2 |
| 3Dqsar tutorial, 20.14 | Frequently Asked Questions, 21 |
| bioisostere, 10.9.2 | GAMESS, 9.20.16 |
| predict, 5.6 | GIF, 3.6.1.15, 6.16, 6.16.2 |
| helices strands, 5.6.1 | GPCR Modeling Example, 20.5.1 |
| local flexibility, 5.6.4 | GRAPHIC.store Display, 4.7.3 |
| protein health, 5.6.3 | NtoC Rainbow, 4.7.4 |
| tools identify ligand binding pocket, 5.6.6 | alignment Rainbow, 4.7.4 |
| oda, 5.6.5 | atomLabelShift, 4.7.7 |
| 4D, 12.2.2, 20.12.1 | ballStickRatio, 4.7.1 |
| dock, 15.16 | center Follows Clipping, 4.7.3 |
| docking, 4.2.2 | clash Style, 4.7.3 |
| 64, 21.1.3 | clashWidth, 4.7.3 |
| APF, 10.35.3, 10.36.4, 11.4, 14, 14.6, 20.14 | clip Grobs, 4.7.3 |
| template, 10.35 | Skin, 4.7.3 |
| ActiveICM, 3.6.1.12 | Static, 4.7.3 |
| Area, 21.2.26 | discrete Rainbow, 4.7.4 |
| Atom Single Style, 4.7.3 | displayLineLabels, 4.7.7 |
| Atomic Property Fields, 11.4, 20.14 | displayMapBox, 4.7.3 |
| Bad Groups, 21.8.7, 21.8.10 | distance Label Drag, 4.7.1 |
| Baell, 10.4.9 | dnaBallRadius, 4.7.9 |
| Beep, 4.7.11 | dnaRibbonRatio, 4.7.9 |
| Blast, 21.2.25 | dnaRibbonWidth, 4.7.9 |
| BlastDB Directory, 4.7.2 | dnaRibbonWorm, 4.7.9 |
| alphas, 6.8.3 | dnaStickRadius, 4.7.9 |
| COLLADA, 3.6.1.7 | dnaWormRadius, 4.7.9 |
| CPK, 3.7.1 | font Scale, 4.7.7 |
| ChEMBL, 4.2.3, 10.1 | fontColor, 4.7.7 |
| Chemical Cluster, 20.6.3 | fontLineSpacing, 4.7.7 |
| Search, 20.6.2 | grobLineWidth, 4.7.3 |
| CisTransAmide Angle, 13.1.10.6 | hbond Ball Period, 4.7.1 |
| Clash Threshold, 4.7.10 | Style, 4.7.1 |
| hbondMinStrength, 4.7.1 | table Row Mark Colors, 4.7.4 |
| hbondStyle, 4.7.1 | workspace Folder Style, 4.7.4 |
| hbondWidth, 4.7.1 | workspaceTabStyle, 4.7.4 |
| hetatmZoom, 4.7.1 | HBA, 21.8.7, 21.8.10 |
| hydrogenDisplay, 4.7.1 | HBD, 21.8.7, 21.8.10 |
| light, 4.7.3 | HTTP.proxy, 4.7.11 |
| lightPosition, 4.7.3 | support Cookies, 4.7.11 |
| mapLineWidth, 4.7.3 | user Agent, 4.7.11 |
| occupancy Radius Ratio, 4.7.3 | Hbond to selection, 13.1.10.6 |
| occupancyDisplay, 4.7.3 | Hbonds, 15.3.4 |
| quality, 4.7.3 | How To Guide, 3 |
| rainbow Bar Style, 4.7.4 | Html, 4.2.1.6 |
| resLabelDrag, 4.7.7 | Http Read Style, 4.7.11 |
| resize Keep Scale, 4.7.3 | Hydrogen.bond, 4.7.5 |
| ribbonRatio, 4.7.9 | ICM Browser How To, 3.1 |
| ribbonWidth, 4.7.9 | Pro How To, 3.2 |
| ribbonWorm, 4.7.9 | graphics crash, 21.1.11 |
| rocking, 4.7.4 | start, 1 |
| Range, 4.7.4 | IMAGE.bondLength2D, 4.7.6 |
| Speed, 4.7.4 | color, 4.7.6 |
| selectionStyle, 4.7.3 | compress, 4.7.6 |
| site Label Drag, 4.7.7 | gammaCorrection, 4.7.6 |
| Shift, 4.7.7 | generateAlpha, 4.7.6 |
| siteArrow, 4.7.7 | lineWidth, 4.7.6 |
| stereoMode, 4.7.3 | lineWidth2D, 4.7.6 |
| stickRadius, 4.7.1 | orientation, 4.7.6 |
| surfaceDotDensity, 4.7.3 | paper Size, 4.7.6 |
| surfaceDotSize, 4.7.3 | previewResolution, 4.7.6 |
| surfaceProbeRadius, 4.7.3 | previewer, 4.7.6 |
| transparency, 4.7.3 | print, 4.7.6 |
| wire Width, 4.7.1 | printerDPI, 4.7.6 |
| wormRadius, 4.7.9 | scale, 4.7.6 |
| xstick Backbone Ratio, 4.7.1 | stereoAngle, 4.7.6 |
| Hydrogen Ratio, 4.7.1 | stereoBase, 4.7.6 |
| Style, 4.7.1 | stereoText, 4.7.6 |
| Vw Ratio, 4.7.1 | INCHI, 10.17.3 |
| GROB.arrowRadius, 4.7.3 | IQR, 16.4.6 |
| atomSphereRadius, 4.7.3 | ISIS, 21.8.3 |
| contourSigmaIncrement, 4.7.3 | Icm Prompt, 4.7.10 |
| relArrow Size, 4.7.3 | InChi, 10.3.20, 10.4.12, 10.17.3 |
| relArrowHead, 4.7.3 | key, 10.3.20 |
| GUI.auto Save, 4.7.4 | Interaction Diagram 2D, 15.3.7 |
| Interval, 4.7.4 | Internal Coordinates Table, 9.20.13 |
| autoSave, 21.2.33 | Directory, 4.7.2 |
| autoSaveInterval, 21.2.33 | JPEG, 3.6.1.15 |
| enumberation Memory Limit, 4.7.11 | KMZ, 3.6.1.7 |
| max Nof Recent Files, 4.7.11 | Log Directory, 4.7.2 |
| Sequence Length, 4.7.4 | LogP, 11, 16.6 |
| splash Screen Delay, 4.7.11 | LogS, 11, 16.6 |
| Image, 4.7.11 | MOL, 10, 10.3.3, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 16.2 |
| MOLT, 17.1 | Sequence, 3.6.2.16 |
| MOVIE.frame Grab Mode, 4.7.4 | convert, 5.1.2 |
| MPO, 10.31 | PFAM, 3.6.1.7 |
| Mac, 21.1.15 | PLOT.Yratio, 4.7.8 |
| Atom Margin, 4.7.10 | color, 4.7.8 |
| Sigma Level, 4.7.10 | date, 4.7.8 |
| Markush, 20.6.9 | draw Tics, 4.7.8 |
| create, 20.6.7 | font, 4.7.8 |
| File Size Mb, 4.7.11 | fontSize, 4.7.8 |
| Max_Fused_Rings, 10.11 | labelFont, 4.7.8 |
| Mnconf, 4.7.10 | lineWidth, 4.7.8 |
| Model, 11.4 | logo, 4.7.8 |
| MolCart, 21.9 | markSize, 4.7.8 |
| MolIPSA, 21.8.7, 21.8.10 | orientation, 4.7.8 |
| MolLogP, 21.8.7, 21.8.10 | paper Size, 4.7.8 |
| MolLogS, 21.8.7, 21.8.10 | previewer, 4.7.8 |
| MolPSA, 10.11 | rainbowStyle, 4.7.8 |
| MolScreen, 14 | seriesLabels, 4.7.8 |
| MolVol, 10.11 | PLS, 11.1 |
| Molcart, 10.5.3 | PNG, 3.6.1.15, 4.1.14, 6.16, 6.16.2 |
| MoldHf, 10.11, 21.8.7, 21.8.10 | Pharmacophore RMSD, 13.1.10.6 |
| Movie.fade Nof Frames, 4.7.4 | Projects Directory, 4.7.2 |
| quality, 4.7.4 | Prosite Dat, 4.7.2 |
| Auto, 4.7.4 | Protein, 21.2.26 |
| NCBI, 21.2.25 | Viewer, 4.7.2 |
| NVIDIA, 21.1 | Pub Chem, 4.2.9 |
| Nof_Atoms, 10.11 | PubMed, 4.2.1.7 |
| Nof_Chirals, 10.11 | Reference, 16.1.40 |
| Nof_HBA, 10.11 | Pubchem, 4.2.9 |
| Nof_HBD, 10.11 | QSAR, 11, 11.1, 16.6, 20.14 |
| Nof_Rings, 10.11 | R, 10.8, 10.33.1 |
| Nof_RotBonds, 10.11 | and S, 21.5.21 |
| Non-overlap, 13.1.10.6 | R-Group, 10.33.3 |
| Nvidia GL failutre, 21.1.11 | R-groups, 15.5.3 |
| ODA, 21.2.26 | REAL, 10.5.5 |
| Optimal, 21.2.26 | RMSD, 5.4.2 |
| Output Directory, 4.7.2 | RNA, 4.3 |
| PAINS, 10.4.9, 10.11.3 | Ramachandran Plot, 5.5.9 |
| chemica, 10.4.9 | Real Format, 4.7.10 |
| PBS, 13.1.7 | Label Shift, 4.7.7 |
| PCA, 11.1, 11.5, 20.6.4 | Style, 4.7.7 |
| analysis, 10.26 | RotB, 21.8.7, 21.8.10 |
| PDB, 4.2.1.6, 5.1.2, 5.3.3, 8.1, 10.1.1, 15.19 | SALI, 10.33.5, 20.6.11 |
| Directory, 4.7.2 | SAR, 11, 14.6, 16.4.25, 16.6 |
| Style, 4.7.2 | table, 10.33.3, 20.6.9 |
| link, 16.1.40 | SCARE, 12.2.4 |
| Search, 3.6.2.12, 3.6.2.13, 3.6.2.14, 3.6.2.15, 3.6.2.16 | SCORE, 21.5.6, 21.5.17 |
| Field, 3.6.2.13 | SDF, 10, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 16.2 |
| Homology, 3.6.2.15 | SEQUENCE.site Colors, 4.7.4 |
| Identity, 3.6.2.14 | SITE.label Style, 4.7.7 |
| wrap Comment, 4.7.7 | advanced alignment selection, 8.7.14 |
| SLIDE.ignore Background Color, 4.7.4 | alanine, 12.2.4 |
| Fog, 4.7.4 | album, 6.15.3 |
| SMILES, 10.1.2, 10.2.4, 10.4.12 | alias, 10.4.5 |
| Select Min Grad, 4.7.10 | align, 4.1.11, 10.14 |
| Show Res Code In Selection, 4.7.7 | color 2D scaffold, 10.14 |
| Smiles, 21.8.7, 21.8.10, 21.8.11 | dna protein, 8.6.4 |
| SureChEMBL, 4.2.4 | multiple, 8.6.5 |
| Swissprot, 3.6.1.7 | sequence structure, 8.6.3 |
| Dat, 4.7.2 | two sequences, 8.6.2 |
| link, 16.1.40 | DNA to protein, 8.6.4 |
| Temp Directory, 4.7.2 | sequence, 8.6, 8.6.6 |
| UNIX, 13.1.7 | two sequences, 8.3.5, 8.6.2 |
| USER.email, 4.7.11 | alignment, 8.3.8, 8.6.1, 8.7.7, 8.7.7.1, 8.7.16, 8.8, 10.35.1, 10.35.2, 20.4.4, 21.4.12, 21.6, 21.6.2 |
| friends, 4.7.11 | annotation tutorial, 20.4.4 |
| full Name, 4.7.11 | box shade font, 8.7.7 |
| organization, 4.7.11 | editing, 8.7.1 |
| phone, 4.7.11 | editor, 8.7 |
| Uniprot, 16.1.40 | example, 8.3.14 |
| VLS, 13.1, 13.1.1, 13.1.2, 13.1.7, 13.1.10.2 | font size, 21.2.1 |
| preferences, 13.1.4 | format, 8.7.11 |
| Van Drie, 10.33.5 | gaps, 8.7.11 |
| Label Style, 4.7.7 | image, 8.7.2 |
| Volume, 21.8.7, 21.8.10 | profile, 20.4.4 |
| Change, 13.1.10.6 | reorder, 8.3.12 |
| Water Radius, 4.7.10 | search, 8.7.12 |
| Wilson, 10.33.2 | secondary, 20.4.4 |
| Wire Style, 4.7.1 | structure, 8.7.16, 21.6.2 |
| XPDB Directory, 4.7.2 | selection, 8.7.13 |
| Xstick, 3.7.1 | strength, 8.3.8 |
| a-bright, 3.7.2 | profile, 8.3.8 |
| about model, 11.1.1 | view options, 8.7.10 |
| acceptor, 10.4.9, 10.36.1 | color, 8.7.9 |
| active, 7.7, 21.3.3 | comment, 8.7.6 |
| activeICM, 7.8 | consensus, 8.7.9, 8.7.14 |
| activeicm, 7.7, 7.12, 7.14, 7.14.1, 21.3 | cut, 8.3.11 |
| advanced, 7.14 | display title, 8.7.10 |
| background images, 7.15 | editor, 8.7 |
| control, 7.13 | extract, 8.3.10 |
| activeicmjs, 7.16 | gaps, 8.7.11 |
| activity cliff, 10.33.5, 10.33.6, 20.6.11 | horizontal scroll, 8.7.10 |
| tutorial, 20.6.11 | image, 8.7.2 |
| activityy, 11, 16.6 | multiple, 8.3.7, 8.6.5 |
| add database, 10.10.3 | options, 8.7.10 |
| new data, 10.3.7 | rename, 8.7.10 |
| to table, 15.5.7 | reorder, 8.3.12 |
| adding fragment, 10.4.8 | ruler, 8.7.10 |
| in editor, 10.4.8 | save, 8.7.2 |
| adjust row height, 21.2.39 | search, 8.7.12 |
| administration, 10.10.5 | selection, 8.7.13, 8.7.14 |
| table, 8.7.10 | aromatic, 10.3.28, 10.36.1 |
| view, 8.7.10 | arrange, 4.1.13.1 |
| alignments, 8.6, 20.4 | window, 4.1.13.1 |
| alpha, 3.7.2 | graph, 21.2.8 |
| channel, 4.7.6 | as2_graph, 4.6.5 |
| ambient, 3.7.2 | as_graph, 21.2.8 |
| amidinium, 10.15 | asparagine, 9.20.2 |
| amino acid, 4.3 | assign, 6.1.3 |
| acids, 10.4.6 | 2D coordinates, 10.17.2 |
| anaglyph, 6.6, 21.1, 21.1.8 | helices, 5.6.1 |
| stereo faq, 21.1.8 | strands, 5.6.1 |
| analysis, 3.6.4, 8.3 | atom, 4.7.5, 10.3.28, 21.2.4, 21.2.5, 21.2.8, 21.2.16, 21.2.17, 21.4.10 |
| angle, 5.5.7, 5.5.8, 6.8.5, 6.9, 6.12.6, 21.2.18, 21.4.16 | charge, 21.4.21 |
| angstrom, 21.4.7 | atomLabelStyle, 4.7.7 |
| animate, 3.6.3.15, 6.10.7 | atomic energy circles, 15.3.5 |
| view, 6.10.7 | property field, 10.35.1, 10.35.2, 15.3.11 |
| animation, 6.10.7.1, 6.10.7.2, 6.10.7.3, 6.10.7.4 | score, 10.36.2 |
| store, 6.10.7.4 | fields, 5.4.6, 10.36, 10.36.1, 10.36.3, 13, 20.8 |
| animations, 7 | attachment, 10.4.3, 10.5.1 |
| annotate, 4.6.21, 10.13 | point, 10.32.4 |
| alignment, 8.7.6 | author, 4.2.1.3 |
| by substructure, 10.13 | close tree, 10.25.5 |
| plot, 16.4.24 | play slide, 7.13 |
| annotation, 8.7.6 | autofit, 12.5 |
| antialias, 3.6.1.15, 3.6.3.10 | autosave, 21.2.33 |
| lines, 3.6.3.17 | available properties, 10.11.1 |
| lines, 3.6.3.17 | ave, 16.7.1 |
| apf, 5.4.6, 10.35.1, 10.35.2, 10.36, 11, 12.3, 13, 13.1.10.7, 13.3, 13.4, 15.3.11, 15.18, 20.8, 20.8.1, 20.8.2, 20.8.3, 20.8.4, 20.8.5, 21.8.12 | avi, 6.16, 6.16.2 |
| flexible template, 10.35.2 | axes, 16.4.15 |
| pairwise, 10.35.1 | axis, 16.4.11 |
| super, 10.35 | options, 16.4.10 |
| template, 15.13 | grid, 16.4.10 |
| tools, 10.36 | range, 16.4.10 |
| 3DQSAR, 10.36.4 | title, 16.4.10 |
| consensus ph4, 10.36.1 | b-factor, 5.6.4, 20.3.10 |
| pairwise score, 10.36.2 | coloring scale, 21.2.38 |
| screen, 10.36.3 | backbone, 6.1.10, 21.2.13 |
| tutorial, 20.8 | background, 6.4.2, 6.4.3 |
| cluster, 20.8.5 | color shortcut, 21.2.2 |
| consensus, 20.8.2 | images activeicm, 7.15 |
| score, 20.8.3 | image, 6.4.3 |
| screen, 20.8.4 | backup, 3.6.2.11 |
| superposition, 20.8.1 | bad, 10.11 |
| alignment, 10.35.3 | groups, 10.4.9 |
| apf3Dqsa, 21.8.12 | ball, 4.7.5 |
| append, 16.1.44 | and stick, 3.7.1 |
| table, 16.1.44 | balloon, 16.4.26 |
| rows, 3.6.10.7 | bases, 10.4.6 |
| applying prediction models, 11.2 | basicsel, 4.6.2 |
| area, 5.5.3, 5.6.5, 12.6, 12.6.2, 12.6.3, 20.3.5 | batch, 12.1.10, 12.6.9, 13.1.7 |
| index, 12.1.10.4 | cache, 7.14.1 |
| loaded icm object, 12.1.10.1 | calculate, 10.11, 21.5.2 |
| mol mol2, 12.1.10.3 | properties, 10.11 |
| molcart, 12.1.10.5 | sequence similarity, 8.7.15 |
| run, 12.1.11 | startup, 21.10.2 |
| bayesian classifier, 11 | carbon, 21.2.4, 21.2.5 |
| bbb, 10.11.4 | carboxylic acid, 10.15 |
| beep, 21.2.35 | cartesian, 10.20 |
| begin docking simulation, 12.1.8 | cavities, 5.5 |
| best, 10.3.34 | closed, 5.5.4 |
| bicyclics, 10.4.6 | ccp4, 21.2.27, 21.2.28 |
| binding, 20.5.3, 21.2.14, 21.5.2, 21.5.10 | cell, 5.3.2 |
| properties, 6.3.1 | center, 3.6.3.20, 4.1.3, 6.12, 6.12.5, 15.3.13, 16.1.40, 21.4.22 |
| bioinfo align multiple, 8.3.7 | on ligand, 15.3.13 |
| two sequences, 8.3.5 | and representative members, 16.7.2 |
| links, 8.3.9 | chain.breaks, 21.2.34 |
| menu, 3.6.4 | chair, 21.5.20 |
| secondary structure, 8.3.2 | change box size, 15.9.1 |
| translation, 8.3.3 | height of all rows, 16.1.7 |
| bioisoester, 10.9 | ligand, 15.5.1 |
| bioisostere, 10.9, 10.9.1, 10.9.2, 15.8 | row height, 16.1.7 |
| biological, 5.3.3 | selection, 4.6.7 |
| biomolecule, 3.6.5, 5.3.3, 20.3.8, 20.3.12 | speed range, 6.10.7.2 |
| bit, 21.1.3 | changing font in alignment editor, 8.7 |
| blast, 4.2.5, 8.4 | charge, 3.6.3.21, 5.1.3, 5.1.3.1, 5.1.3.2, 6.8.2, 10.4.3, 10.5.1, 10.7.1, 10.7.2, 10.7.3, 10.36.1, 13.1.10.6, 21.4.1 |
| search, 4.2.5 | groups, 12.1.6, 21.5.22 |
| blood brain barrier, 10.11.4 | check box, 7.6.6 |
| blue lines, 8.2 | convert, 21.8.5 |
| boat, 21.5.20 | export excel, 10.2.3 |
| bond, 5.1.3, 5.2.3, 5.2.3.1, 5.2.3.2, 9.9, 10.4.10, 21.4.1, 21.8.7, 21.8.10 | save, 10.2 |
| covalent, 21.4.2 | 3D, 10.2.5 |
| type, 5.1.3.1, 5.1.3.2, 10.7.1, 10.7.2, 10.7.3 | editor, 10.2.4 |
| bonding, 6.1.8 | image, 10.2.6 |
| preferences, 4.7.1 | table, 10.2.2 |
| box, 4.7.7, 6.8.15, 8.7.7, 8.7.7.1, 21.5.9 | super, 10.34 |
| alignment, 20.4.4 | view, 10.3.28 |
| size, 15.9.1 | chembl, 4.2.3, 4.2.4 |
| browse, 10.3.31, 12.1.12.1, 18.4 | chemical, 10, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.4.10, 10.8, 10.10.4, 10.11.3, 10.17.2, 10.21, 10.32.4, 10.32.5, 10.34, 10.35.1, 10.35.2, 16.7.1, 20.6.4, 21.8.4, 21.8.5, 21.8.7, 21.8.8, 21.8.9, 21.8.10 |
| mode, 10.3.31 | clustering, 10.25, 10.25.6 |
| molt, 17.2 | descriptors, 21.8.15 |
| stack, 9.20.15 | dictionary, 10.4.4, 10.4.5, 10.4.6 |
| build, 6.10.7.1 | draw, 20.6.1 |
| homology model, 9.1.2 | spreadsheet tutorial, 20.6.1 |
| hydrogens, 9.20.5 | edit buttons, 10.4.11 |
| buried molSurface, 13.1.10.6 | editor, 10.4, 10.4.8 |
| buttons, 7.14 | not starting, 21.1.13 |
| bye, 3.6.1.19 | fingerprint, 14 |
| alpha, 6.1.10 | fingerprints, 21.8.15 |
| trace, 6.1.10 | fragments, 10.3.33 |
| ca-trace, 6.1.10 | group, 10.4.5 |
| modifiers, 10.32.2 | chemlib.so, 21.1.3 |
| properties, 20.6.4 | chemspace append, 20.6.4.4 |
| right click, 10.4.3 | build visualize, 20.6.4.1 |
| search, 10.5, 13.4 | compare, 20.6.4.8 |
| filter, 10.5.2 | delete row, 20.6.4.3 |
| text, 10.5.4 | distinguish, 20.6.4.7 |
| sketch, 20.6.1 | export, 20.6.4.5 |
| space, 10.27 | project, 20.6.4.6 |
| spreadsheet, 4.2.3, 10.1.3, 10.3.1, 10.4.14, 20.6.1, 21.8.13 | select, 20.6.4.2 |
| compare, 10.3.22 | chi, 6.8.5, 21.2.18 |
| template, 10.3.2 | chiral, 10.22, 12.1.1.3 |
| spreadsheets, 10.3 | chirality, 10.22, 12.1.1.3 |
| substituent, 10.9 | considerations, 12.1.1.3 |
| substructure, 4.2.1.1 | chrome, 21.3 |
| table, 15.10, 21.8.11 | cis trans proline, 20.5.2 |
| display, 10.3.3 | clash, 4.7.5, 6.8.14 |
| tables, 16.2 | volumes, 13.1.11 |
| toxicity, 10.11.3 | classes, 10.3.28 |
| 2D, 10.7 | classification model, 14.5 |
| 3D, 10.7 | clear display and planes, 3.6.3.2 |
| append, 10.4.13 | selection, 4.6.6 |
| clustering, 10.25, 10.25.1 | planes, 3.6.3.2 |
| convert, 5.1.3, 5.1.3.1, 5.1.3.2, 9.20.1, 10.7, 10.7.1, 10.7.2, 10.7.3, 21.4.1 | click, 4.1.12, 6.11, 6.12 |
| display.fit, 21.8.13 | clip, 6.3.10, 6.13.1, 21.2.11 |
| draw, 10.4.1 | clipboard, 6.15.3, 16.7.3 |
| duplicates, 10.3.21 | clipping, 21.2.19 |
| editor, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 | planes, 6 |
| load, 10.1 | tool, 6.13 |
| merge, 10.29 | tools, 6.13 |
| new, 10.4.1 | clone, 3.6.1.2 |
| properties, 10.3.19 | close, 6.3.3, 6.3.4, 15.21 |
| query, 10.4.3, 10.5.1, 10.5.3 | downstream cluster, 10.25.5 |
| read, 10.1 | project, 15.21 |
| save, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13 | cavities, 5.6.6 |
| search, 10.4.3, 10.5, 10.5.1, 10.5.3 | cluster, 13.1.7, 13.1.10.7, 16.7.1 |
| similarity, 10.4.3, 10.5, 10.5.1, 10.5.3 | representative.center, 10.25.2 |
| spreadsheet, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3 | clustering, 16.7, 20.6.3 |
| structure, 10.4.13 | cns, 10.31 |
| superimpose, 10.34.1, 10.34.2, 10.34.3 | collada, 3.7.6, 6.3.7 |
| superposition, 10.35, 10.35.3 | color, 5.6.3, 6.3.2, 6.3.3, 6.3.4, 6.3.9.4, 6.4, 6.4.1, 6.8.2, 6.8.3, 8.8, 10.3.35, 10.14, 16.1.45, 16.7.4, 21.2.4, 21.2.5, 21.2.16, 21.2.20 |
| table, 10.3, 16.2 | alignment, 8.7.9 |
| cheminformatics, 10, 10.3, 21.8 | background, 6.4.2 |
| tutorials, 20.6 | by, 6.4 |
| chemistry, 10.21, 21.8 | alignment, 8.8 |
| convert, 10.17 | chemical, 10.3.35 |
| 2dto3d, 10.17.1 | faq, 21.2.20 |
| pca, 10.26 | key, 21.2.38 |
| smiles, 10.17.3 | scale, 21.2.38 |
| duplicates, 10.30 | surface by proximity, 6.3.3 |
| remove.redundant, 10.30 | selection, 6.3.4 |
| 2D sketch, 10.5.6.5 | contact, 5.5, 5.5.3, 20.3.5 |
| background, 3.6.3.18, 6.4.2 | surface, 6.3.2 |
| distance, 6.8.10 | contacts, 6.3.3, 6.3.4, 10.6, 13.1.10.8, 15.3.12 |
| mesh, 6.3.9.3 | contour, 5.3.6, 5.3.7 |
| table, 10.3.27 | convert, 5.1.2, 10.17.1, 10.17.5, 21.8.5 |
| coloring, 6.4.1 | chemical, 10.3.24 |
| coloumn, 16.1.25 | 2D 3D, 10.7 |
| column, 16, 16.1.6, 16.1.22, 16.1.39, 16.1.40, 16.4, 16.4.1, 21.8.7 | 3D molecular editor, 10.4.16 |
| annotation, 16.1.41 | from pdb, 5.1.3 |
| order, 16.1.29 | local database, 3.6.1.6 |
| plot, 16.4.6 | pdb, 20.3.2 |
| row width, 16.1.22 | chem, 10.7.1 |
| statistics, 16.1.32 | smiles to 2D, 21.8.11 |
| visibility order, 16.1.28 | local.database, 3.6.1.6 |
| color, 16.1.10 | smiles, 10.17, 10.17.3, 10.17.4 |
| hide, 10.3.8 | converting pdb, 5.1.2 |
| show, 10.3.8 | coordinates, 10.1.3 |
| combinatorial chemistry, 10.32 | copy, 10.3.25, 10.4.11, 10.4.17, 10.5.6.2, 16.1.35 |
| library, 20.6.8 | cell, 16.1.36 |
| combine, 3.6.10.5 | chemical, 10.3.25 |
| display style, 4.7.9 | loop, 9.4 |
| command, 21.5.16 | paste row, 16.1.35 |
| line, 21.2.32 | row, 16.1.36 |
| commands, 21.10.1 | rows, 16.1.44 |
| compact tree, 10.25.5 | selection to table, 16.1.37 |
| compare, 10.3.29, 10.28, 10.29 | chemical, 10.3.16 |
| table, 10.3.22 | covalent, 15.10.1 |
| tables, 10.28 | bond, 5.6.2, 20.9.3 |
| compatible, 3.6.1.10 | docking, 12.4, 12.4.1, 15.17, 20.9.3 |
| complex, 10.6, 13.1.10.5 | tutorial, 20.9.3 |
| compound, 4.2.1.3, 10.21, 16.2 | cpk, 6.1.5, 21.2.21 |
| compounds, 21.9.3 | crash, 3.6.2.11 |
| compress, 4.7.6 | creat, 7.6.1 |
| compressed, 16.1.6 | create, 16.1.1 |
| table view, 16.1.6 | markush, 10.32.3 |
| conditions, 10.5.2 | new objects, 4.3 |
| gen, 10.20 | cross, 21.2.10 |
| configuration error, 21.1.19 | section, 6.13 |
| conformation, 10.20, 12.2.2 | crystal, 5.3.2 |
| conformational entropy, 10.24 | crystallographic analysis, 5.3 |
| conformations, 21.9.8 | biomolecule, 5.3.3 |
| conformers, 10.20 | contour map, 5.3.6 |
| connect, 6.3.9.1, 6.12, 6.12.7 | convert2grid, 5.3.7 |
| object, 6.12.7 | crystallographic cell, 5.3.2 |
| connectivity, 10.4.3, 10.5.1 | load eds, 5.3.4 |
| consensus, 10.36, 20.8.2 | maps cell, 5.3.5 |
| pharmacophore, 10.36.1 | symmetry packing, 5.3.1 |
| construct, 3.6.1.1, 6.10.7.1 | tools, 20.3.8 |
| molecule, 3.6.1.1 | cell, 3.6.5 |
| object, 3.6.1.1 | neigbor, 5.3.1 |
| crystallography, 5.3.4, 5.3.6, 5.3.7, 21.2.27, 21.2.28 | dimensional, 21.8.6 |
| csv, 10.2.3, 16.1.2, 16.1.3, 16.1.21, 18.2 | directories preferences, 4.7.2 |
| current, 21.2.22 | directory, 4.7 |
| slide, 7.13 | disappearing labels, 21.1.12 |
| curves, 16.4.5 | dislay ligand receptor interaction, 10.6 |
| custom, 6.12, 10.3.3, 10.34 | display, 4.1.4, 4.1.13.1, 4.7, 5.2.3, 5.2.3.1, 5.2.3.2, 6.8.14, 6.14, 10.22, 12.1.6.3, 21.2.4, 21.2.5, 21.2.8, 21.2.10, 21.2.11, 21.2.17, 21.2.21, 21.2.30, 21.2.32, 21.4.10, 21.4.11, 21.4.20, 21.8.4 |
| actions, 16.1.40 | delete distances, 6.9.4 |
| fragments, 10.13 | dihedral, 6.9.3 |
| label, 6.8.8 | distance restraints, 6.8.13 |
| rotation, 6.12.2 | distance2, 6.9.1 |
| cut, 16.1.35 | angles, 6.9 |
| vertical alignment block, 8.3.11 | formal charge, 6.1.9 |
| cyclic peptide, 9.19 | gradient, 6.8.16 |
| cys, 5.6.2 | hbond, 13.1.10.5 |
| cysteine reactivity, 5.6.2 | hbonds, 13.1.10.6, 15.3.4 |
| damaged skin, 21.1.12 | hydrogen, 6.1.7 |
| dash, 21.2.12 | atoms ligand editor, 15.3.3 |
| database, 8.4, 10.10, 10.32.4, 13.1.3, 13.1.6, 17.1, 18 | mesh, 6.3.5 |
| file format, 13.1.3 | meshes, 6.3.8 |
| seach and alignment, 8.4 | options, 15.3 |
| databases, 21.9.3 | planar angle, 6.9.2 |
| decompose.library, 20.6.9 | tab, 3.7.1, 21.2.16 |
| decomposition, 10.32.4, 10.33.1, 16.4.25 | tether, 6.8.12 |
| default, 4.1.13 | toggle, 6.8.15 |
| delete, 3.6.2.1, 4.6.6, 7.6.8, 21.4.9 | CPK, 6.1.5 |
| alignment, 8.7.5 | angle, 6.9.2 |
| all, 3.6.2.2 | chemical, 10.3.3 |
| column row, 16.1.38 | dihedral.angle, 6.9.3 |
| label, 6.8.9 | distace, 6.8.10 |
| alignment, 8.7.5 | distance, 6.8.13, 6.9.1 |
| all, 3.6.2.2 | electrostatic, 3.6.3.21 |
| angle.label, 6.9.4 | energy.gradient, 6.8.16 |
| column, 16.1.38 | hydrogen, 6.1.7 |
| distance.label, 6.9.4 | polar, 6.1.7 |
| label, 6.8.9 | macroshape, 6.3.6 |
| row, 16.1.38 | meshes, 6.3.5 |
| selection, 3.6.2.1 | and display.macroshape, 3.7.6 |
| tether, 9.20.5 | molecule, 10.3.24 |
| dendrogram, 10.27.1 | origin, 6.8.11 |
| density, 5.3.4, 5.3.6, 5.3.7, 21.2.27, 21.2.28 | potential, 3.6.3.21 |
| depth, 6.3.12, 6.10.5 | representations, 3.7.1 |
| deselect, 21.2.7 | restraints, 6.8.13 |
| design loop, 9.3, 9.20.10 | ribbon, 6.1.3 |
| deviation, 21.4.7 | skin, 6.1.4 |
| dfa, 14.3.3 | status, 21.2.32 |
| dfz, 14.3.2 | surface, 6.1.6, 6.3.1 |
| dialog, 7.6.5 | surfaces, 3.7.6 |
| diffuse, 3.7.2 | table, 10.3.3 |
| dihedral, 5.5.8, 6.8.5, 21.2.18 | tethers, 6.8.12 |
| angle, 5.5 | wire, 6.1.1 |
| distance, 5.5, 5.5.6, 6.8.10, 6.9, 10.28, 21.2.12, 21.4.8, 21.4.10 | template, 12.3 |
| faq, 21.4.10 | document, 7.6.4, 7.6.5 |
| restraint, 12.1.7 | navigation, 7.6.7 |
| label, 4.7.7 | documents, 6.15.3 |
| distances, 3.7.3 | dollar, 21.10.3 |
| disulfide, 9.9, 9.16 | donator, 10.4.9 |
| bonds, 9.16 | envelope, 3.7.1 |
| diverse set, 16.7 | surface, 4.7.5 |
| dock, 12, 12.1, 12.5, 15.10, 15.10.1, 20.9.3, 20.11.1, 20.11.2, 20.12.1, 21.5.3, 21.5.4, 21.5.5, 21.5.7, 21.5.8, 21.5.10, 21.5.11, 21.5.12, 21.5.13, 21.5.14, 21.5.15, 21.5.16, 21.5.21 | dotted line, 6.1.3 |
| apf, 15.18 | lines, 21.2.34 |
| chemical table, 12.1.15 | double, 10.4.10 |
| command, 21.5.16 | doublet, 10.4.7 |
| macrocylce, 21.5.20 | download, 21.1.1, 21.9.3 |
| table, 15.10 | dpc, 14.3.4 |
| covalent, 15.10.1 | drag, 4.1.11, 4.7.7, 6.8.3, 7.6.4, 8.6.6, 21.4.5 |
| docking, 5.6.5, 12, 12.1.1, 12.1.2, 12.1.3, 12.1.16, 12.2, 12.2.1, 12.2.2, 12.2.3, 12.6, 12.6.1, 12.6.2, 12.6.3, 12.6.4, 12.6.5, 12.6.6, 12.6.8, 12.6.9, 12.6.10, 13.1, 13.1.1, 13.1.2, 13.1.6, 13.2, 15.10, 15.10.1, 15.11, 20.9, 20.9.1, 20.9.2, 20.11.3, 20.12, 20.12.2, 21.5, 21.5.1, 21.5.9, 21.5.17, 21.5.18 | and drop sequences, 8.6.6 |
| batch index, 12.1.10.4 | residue label, 3.6.3.16 |
| covalent, 12.4 | draganddrop, 4.1.11 |
| display, 12.1.17 | draw, 10.4.17, 10.32.5, 21.8.2 |
| explicit group, 20.12.2 | chemical, 10.4.1 |
| from table, 12.1.9.1, 12.1.9.2 | drop, 4.1.11, 7.6.4, 8.6.6, 21.4.5 |
| introduction, 12.1.1 | drug, 10.11, 21.8.7, 21.8.9 |
| macrocycles, 12.1.6 | bank, 4.2, 4.2.8, 10.1 |
| maps, 12.1.4, 12.1.5 | like, 10.11.4 |
| preferences, 12.1.6 | drugbank, 10.1 |
| database scan, 12.1.6.2 | druglikeness, 10.4.9 |
| display, 12.1.6.3 | dsPocket, 4.1.8 |
| general, 12.1.6.1 | dual alanine scanning, 12.2.4 |
| project, 13.1.5 | easy rotate, 3.6.3.12 |
| table, 13.1.5 | ecfp, 11.3 |
| results display, 12.1.17 | edit, 5.2.3.1, 15.5.8, 21.8.3 |
| setup, 21.5.13 | 2D, 15.5.1 |
| start, 12.1.3 | alignment, 8.7.1 |
| steps, 12.1.2 | chemical moledit, 10.3.26 |
| template, 12.3 | ligand, 15.5, 15.5.1 |
| templates, 15.13 | 2D, 15.5.1 |
| tutorials, 20.9 | editor preferences, 15.2 |
| background, 21.5.19 | multiple substituents, 15.5.2 |
| batch, 12.1.10 | tools, 3.6.2.17 |
| conformations, 21.5.20 | menu, 3.6.2 |
| flexible.rings, 21.5.20 | molecular document, 7.6.1 |
| hitlist, 12.1.13 | molecule, 10.4 |
| interactive, 12.1.9 | molt, 17.3 |
| preparation, 12.1.3 | selection, 3.6.2.5 |
| procedure, 12.1.8 | slide, 7.4.1 |
| rank, 12.1.13 | table row, 16.1.24 |
| results, 12.1.12, 12.1.12.1, 12.1.12.2, 12.1.13 | molecule, 10.3.26 |
| sampling, 21.5.20 | structure, 10.3.26 |
| score, 12.1.13 | editor, 21.4.12 |
| stack, 12.1.12.2 | editpdbsearch, 3.6.2.12 |
| effect of mutation, 9.14, 9.15 | exit, 3.6.1.19 |
| on binding tutorial, 20.5.3 | explicit, 10.3.28, 12.2.1 |
| example2, 20.5.3.1 | flex, 12.2.1 |
| stability tutorial, 20.5.4 | group, 12.2.3 |
| effort, 10.20, 10.34, 21.5.12 | docking, 12.2.3 |
| electron, 5.3.4, 5.3.6, 5.3.7, 21.2.27, 21.2.28 | groups, 20.12.2 |
| denisty map, 5.3.5 | export, 5.5.10, 18.4 |
| densitry map.contour, 3.6.5 | dock project, 15.20 |
| map, 3.6.1.7, 3.6.5, 5.3.4, 5.3.6, 12.5 | pdb, 4.5 |
| electrostatic coloring scale, 21.2.38 | extra windows, 6.2 |
| potential, 3.6.3.21 | extract, 4.4.2, 8.1, 10.1.3, 21.4.12, 21.8.8 |
| surface, 6.3 | 2D, 10.1.1 |
| electrostatics, 6.3.1, 12.6.8 | 3d coordinates to spreadsheet, 10.1.3 |
| elegant sketch, 6.10.4 | icb, 3.6.1.5 |
| element, 10.4.10 | object icb, 4.4.2 |
| eln, 18.7 | sub alignment, 8.3.10 |
| embed browser, 7.11 | icb, 3.6.1.5 |
| powerpoint03, 7.8 | pharmacophore, 10.5.6.4 |
| powerpoint07, 7.9 | faq, 21, 21.2, 21.2.13, 21.4, 21.5, 21.7, 21.10, 21.10.2 |
| powerpoint10, 7.10 | ISISdraw, 21.8.3 |
| activeicm, 7.13 | MolCart, 21.9 |
| script, 7.13 | activeicm, 21.3 |
| browser, 7.7, 7.11 | path, 21.3.3 |
| firefox, 7.7, 7.11 | alignment secondary structure, 21.6.2 |
| internet.explorer, 7.7, 7.11 | apf model, 21.8.12 |
| microsoft, 7.7 | atom charge, 21.4.21 |
| powerpoint, 7.7, 7.8, 7.9, 7.10 | display, 21.2.17 |
| empty hostid, 21.1.18 | autosave, 21.2.33 |
| enamine, 10.5.5 | backbone, 21.2.13 |
| enantiomer, 21.5.21 | background color, 21.2.2 |
| enantiomers, 12.1.1.3 | job, 21.5.19 |
| energy, 5.6.3, 6.8.14, 10.24, 10.24.2, 12.1.12.2, 21.5.1, 21.5.2, 21.9.8 | beep, 21.2.35 |
| circles, 13.1.11 | binding energy, 21.5.2 |
| maps, 12.1.4, 12.1.5 | blend transition, 21.2.31 |
| terms, 9.20.18 | breaks, 21.2.34 |
| ensemble, 12.2.2 | change torsion, 21.4.16 |
| entropy, 10.24.1 | chem table display, 21.8.4 |
| enumerate formal charge states, 10.16 | chemical monitor, 21.8.10 |
| reaction, 20.6.10 | query2, 21.8.1 |
| enumeration, 10.32.4 | cheminformatics, 21.8 |
| eps, 10.2.6 | clipping plane, 21.2.11 |
| epsilon, 21.4.15 | closest, 21.4.22 |
| eraser, 10.4.11 | color carbon, 21.2.4 |
| errno, 21.1.3 | skin, 21.2.16 |
| error, 21.1.3, 21.1.19, 21.2.35 | command line display, 21.2.32 |
| evaluate score strain, 15.4 | convert chemical from pdb, 21.4.1 |
| exact, 10.28 | covalent bond, 21.4.2 |
| excel, 10.2.3 | delete, 21.4.9 |
| exclude fragment, 10.5.2 | descriptors, 21.8.15 |
| volume, 15.3.11 | deselect, 21.2.7 |
| dock charge groups, 21.5.22 | select, 21.2.6 |
| probe, 21.5.13 | renumber, 21.4.4 |
| racemic, 21.5.21 | residue number selection, 21.2.36 |
| repeat, 21.5.5 | rmsd, 21.4.7 |
| working directory, 21.5.23 | rmsdtips, 21.4.8 |
| docking, 21.5 | rocking active ppt, 21.3.1 |
| docktime, 21.5.11 | speed, 21.3.2 |
| dollar, 21.10.3 | rotate chemical, 21.8.13 |
| download install, 21.1.1 | scale display, 21.2.38 |
| druglikeness, 21.8.9 | scanScoreExternal, 21.5.17 |
| energy, 21.5.1 | scanScoreExternal2, 21.5.18 |
| error admin, 21.1.10 | score, 21.5.8 |
| extract ligand, 21.8.8 | script, 21.10 |
| flexible dock, 21.5.15 | sequence secondary structure, 21.6.1 |
| ring docking, 21.5.20 | alignments, 21.6 |
| font size, 21.2.1 | smiles, 21.8.11 |
| foreground table, 21.10.4 | solvent accessible surface table, 21.4.19 |
| gl failure, 21.1.11 | ss, 21.4.17 |
| gui, 21.2 | structure, 21.4 |
| guided dock, 21.5.3 | superimpose, 21.4.6 |
| hitlist, 21.5.7 | surface display, 21.2.37 |
| hydrogen bond acceptors, 21.8.17 | thoroughness, 21.5.12 |
| iSee, 21.2.30 | transparent ribbon, 21.2.3 |
| icmPocketFinder, 21.5.10 | truncate mesh, 21.2.15 |
| insert column, 21.8.7 | view stack, 21.9.8 |
| installation, 21.1 | weak hydrogen bonds, 21.4.20 |
| interactions, 21.2.12 | write pdb, 21.4.3 |
| ligandbox, 21.5.9 | faqcontour, 21.2.28 |
| measure distance ring, 21.8.16 | faqhbondstrength, 21.2.29 |
| merge, 21.4.5 | faqmaps, 21.2.27 |
| modeling, 21.7 | faqoda, 21.2.26 |
| molcart 64bit, 21.1.3 | faqstereo, 21.1.14 |
| query, 21.9.5 | fasta, 8.1.5 |
| sdf, 21.9.4 | fbdd, 13.2 |
| text search, 21.9.6 | fft, 12.6.1 |
| molecule c, 21.2.5 | protein protein docking, 12.6.1 |
| moledit, 21.8.2 | file, 3.6.1.3 |
| movie planes, 21.2.19 | close, 3.6.1.13 |
| newscript, 21.10.1 | compatible, 3.6.1.10 |
| nmr, 21.4.18 | export, 3.6.1.12 |
| nvidia error, 21.1.2 | high quality image, 6.15.1 |
| origin, 21.2.10 | load, 3.6.1.7 |
| plist, 21.1.9 | menu, 3.6.1 |
| pmf score, 21.5.6 | password, 3.6.1.11 |
| pockets, 21.2.14 | preferences, 3.6.1.16 |
| preserve coordinates, 21.8.6 | quick image, 3.6.1.14 |
| quad buffer, 21.1.7 | icb, 4.1.10 |
| receptor selection, 21.5.14 | recent, 3.6.1.17 |
| reload dock, 21.5.4 | bak, 3.6.2.11 |
| remove salt, 21.8.14 | filter, 17.2, 21.2.4 |
| filters, 13.1.5 | giga search, 10.5.5 |
| find chemical, 10.3.32 | enamine, 10.5.5 |
| fingerprint, 11, 11.3, 20.13, 21.8.1, 21.9.5 | glasses, 6.6, 21.1.6, 21.1.14 |
| method, 11.3 | glutamine proline, 9.20.2 |
| fingerprints, 21.8.15 | google, 3.6.1.7 |
| firefox, 21.3 | objects, 6.3.7 |
| fit, 10.3.34, 12.5, 21.5.15 | 3D, 3.7.6, 6.3.7 |
| fitting, 12.5, 16.4.16 | gpcr_model, 20.5.1 |
| flex super, 10.34.3 | graft loop, 9.4 |
| flexibility, 5.6.4, 12.2.3, 20.12 | graphical, 21.2.4 |
| flexible, 10.34, 12.2, 12.2.1, 12.2.2, 20.12.1, 21.5.15 | display, 5.1.3.1, 5.1.3.2, 10.7.2, 10.7.3 |
| docking, 15.14 | tutorial, 20.1 |
| receptor groups, 15.14 | 2D3D labels, 20.1.4 |
| ring sampling level, 12.1.6 | annotation, 20.1.2 |
| flood, 9.20.17 | color representation, 20.1.1 |
| fog, 3.6.3.5, 6, 6.10.1 | labels, 20.1.3 |
| font, 4.7, 4.7.7, 5.2.3.1, 6.8.2, 6.8.3, 8.7.7, 8.7.7.1, 10.3.28, 16.1.40, 16.7.4 | user interface, 21.2 |
| preferences, 4.7.7 | graphics, 4.1 |
| size, 8.7, 21.1.16, 21.2.1 | card, 21.1.2 |
| form view, 16.1.5 | controls, 6 |
| formal, 5.1.3, 21.4.21 | defects, 21.1.12 |
| charge, 6.1.9, 10.15, 10.16 | effects, 6.10 |
| format, 16.1.2, 16.1.40 | panel, 6.2 |
| formula, 10.4.9, 10.11 | preferences, 4.7.3 |
| fragment, 10.3.35, 10.33.1, 13, 13.2, 15.11 | shadow, 3.6.3.13, 6.10.2 |
| linking, 15.11 | green arrows, 8.7.16, 21.6.2 |
| screening, 13.2 | lines, 8.2, 21.6.1 |
| fragments, 10.8 | grid, 10.3.3, 10.34, 20.12.1, 21.8.4 |
| frame, 8.3.3 | grob, 4.7.5, 5.3.4, 5.3.6, 5.3.7, 6.3 |
| free energy, 9.12, 9.13 | group, 10.33.1, 15.6 |
| radical, 10.4.7 | column, 16.1.46 |
| wilson regression analysis, 10.33.2 | groups, 10.8, 10.11, 10.12 |
| freeze column, 16.1.30 | guanidinium, 10.15 |
| row, 16.1.31 | gui, 4.1.1, 4.7.4 |
| frequency, 10.3.35 | menus, 3.6 |
| front, 6.3.10, 6.13.1 | preferences, 4.7.4 |
| full model, 9.1.3 | tabs, 3.7 |
| builder, 9.1.3 | guided docking, 12.1.7, 21.5.3 |
| multiple chain, 9.1.3.1 | h-bond, 5.2.3, 5.2.3.1, 5.2.3.2, 21.2.12 |
| refinement, 9.1.3 | halogen, 10.11.2 |
| scene antialias, 3.6.3.10 | hardware stereo, 3.6.3.7, 21.1 |
| screen, 3.6.3.8 | hbond, 5.2, 20.3.6, 21.2.29 |
| function, 16.1.26, 16.1.32 | strength, 21.2.29 |
| functional.groups, 10.13 | header, 4.2.1.6, 16.4.9 |
| fuzzy, 12.3 | health, 5.6.3 |
| gap, 9.3 | heatmap, 16.4.7 |
| general preferences, 4.7.5 | example, 16.4.7.1 |
| generalselecttools, 4.6.1 | helix, 21.2.20 |
| generator, 5.3.3, 10.20 | help, 2 |
| getting started, 4 | videos, 2 |
| scan, 15.7 | show hide, 10.3.8 |
| hidden block format, 8.7.11 | sort column, 10.3.5 |
| width, 8.7.11 | standardize, 10.3.18 |
| hide, 16.1.39 | table hyperlinks, 10.3.15 |
| column, 16.1.28 | print, 10.3.11 |
| high, 3.6.1.15 | activeicm, 3.3 |
| quality, 3.6.3.11 | create molecular documents, 3.3.3 |
| highlight new data, 10.3.7.1 | slides, 3.3.2 |
| his, 21.4.15 | getting started, 3.3.1 |
| histidine, 9.20.2, 21.4.15 | ppt, 3.3.4 |
| tautomer, 21.4.15 | web, 3.3.5 |
| histogram, 13.1.10.2, 13.1.10.3, 16.4, 16.4.1, 16.4.9, 16.4.11, 16.4.13, 16.4.14, 16.4.15, 16.4.16, 16.4.17, 16.4.18, 16.4.20, 16.4.22 | chemical clusering, 10.25.1 |
| bins, 16.4.3 | icm browser convert display pocket, 3.1.4 |
| options, 16.4.2 | distances angles, 3.1.9 |
| bin.size, 16.4.2 | get started, 3.1.1 |
| bins, 16.4.3 | graphical display, 3.1.2 |
| color, 16.4.2 | effects, 3.1.5 |
| source, 16.4.2 | images, 3.1.7 |
| style, 16.4.2 | labels annotation, 3.1.6 |
| title, 16.4.2 | pro crystallographic tools, 3.2.6 |
| hitlist, 12.1.12, 12.1.13, 13.1.9, 13.1.10.1, 13.1.10.3, 13.1.10.7, 21.5.7 | get started, 3.2.1 |
| cluster apf, 13.1.10.7 | graphics, 3.2.2 |
| export, 12.1.14 | plots, 3.2.8 |
| homology, 4.2.1.2, 4.2.5, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 20.5 | sequence analysis, 3.2.7 |
| model, 9.1, 9.1.1.2 | structure analysis, 3.2.3 |
| introduction, 9.1.1 | superimpose, 3.2.5 |
| older versions, 9.1.1.3 | surfaces, 3.2.4 |
| hover, 16.4.26 | selections, 3.1.3 |
| 3D editor, 20.7 | superimpose, 3.1.8 |
| add columns, 10.3.4 | search, 4.2 |
| cluster center, 10.25.2 | use gui, 4.1 |
| color 2D by ph4, 10.5.6.5 | hrydrogen.bond, 21.2.29 |
| copy 2D, 10.3.16 | html, 3.6.1.12, 4.3, 7.6.1, 7.6.7, 21.3 |
| paste, 10.3.6 | html-doc font size, 21.2.1 |
| decompose, 20.6.9 | hybridization, 10.4.3, 10.5.1 |
| duplicate chemicals, 10.3.21 | hydrogen, 5.2.3, 5.2.3.1, 5.2.3.2, 6.1.8, 10.4.3, 10.5.1, 20.3.6, 21.2.12, 21.8.7, 21.8.10 |
| edit table, 10.3.17 | atom display, 15.3.3 |
| tree, 10.25.4 | bond, 5.2, 6.1.8, 10.6, 13.1.10.5, 20.3.6 |
| excel, 10.3.10 | acceptors, 21.8.17 |
| extract 3D ph4, 10.5.6.4 | donor, 10.36.1 |
| filter, 10.3.12 | label edit, 5.2.3.1 |
| find replace, 10.3.13 | move, 5.2.3.2 |
| mark row, 10.3.14 | bonds, 5.2.4, 12.1.1.5 |
| markush, 20.6.8 | bond, 10.4.9, 21.4.20 |
| structure, 20.6.7 | hydrogens, 10.3.28 |
| merge tables, 10.3.23 | remove, 10.3.18 |
| properties, 10.3.19 | hyperlink, 7.6.1, 7.6.2, 16.1.40 |
| reactions, 20.6.10 | hyrophobic, 10.36.1 |
| reorder, 10.25.3 | iSee, 3.6.1.5, 3.6.1.12, 4.1.10, 6.15.3, 20.2, 21.2.30, 21.2.31, 21.3.3 |
| sdf, 10.3.9 | icb, 4.4.2, 4.5, 21.2.30, 21.3.3 |
| chemist howto chemical search, 3.4.3 | script, 7.6.4 |
| cluster, 3.4.5 | install, 1, 10.10.1, 18.1, 21.1.3, 21.1.4 |
| combi library, 3.4.7 | installation, 21.1 |
| ph4, 3.4.4 | interactio, 21.5.2 |
| plots, 3.4.8 | interaction, 5.5.3, 10.6, 21.2.12 |
| sketch, 3.4.1 | fingerprint, 13.1.10.8 |
| spreadsheets, 3.4.2 | fingerprints, 13.1.10.8 |
| stereoisomers tautomers, 3.4.6 | restraint, 12.1.7 |
| pro 3D ligand editor, 3.5.1 | restraints, 12.1.7 |
| chem3D, 3.5.2 | interactions, 15.3.12 |
| chemsuper, 3.5.4 | interactive, 12.1.9, 20.2 |
| energy, 3.5.3 | loaded ligand, 12.1.9.2 |
| qsar, 3.5.5 | loop, 9.1.4.2 |
| tutorials, 3.5 | modeling, 9.1.4 |
| tutorials, 3.4 | table ligand, 12.1.9.1 |
| hanging, 21.1.13 | modeling, 9.1.4 |
| object, 5.1, 20.3.2 | interface prediction, 20.10 |
| script, 16.1.40 | internal hydrogen bonds, 12.1.1.5 |
| icm-crash, 21.1.13 | internet explorer, 21.3 |
| icmFastAlignment, 8.4 | interrupt, 6.10.7.3 |
| icmPocketFinder, 5.6.6, 21.2.14, 21.5.10 | animation, 6.10.7.3 |
| icmdb, 18 | introduction, 1 |
| icmjs, 7.16 | invert selection, 16.1.23 |
| icmpocketfinder, 20.3.7 | invisible residue label, 21.1.12 |
| id, 16.1.27 | iqr, 16.4.23 |
| identity, 4.2.1.2 | isee, 7.6.5 |
| image, 4.1.14, 4.7, 4.7.5, 6.15.3, 7.6.3, 10.2, 10.2.6, 16.4.21, 21.1.20 | isis, 10.4.17 |
| advanced, 6.15.3 | isostere, 13.4 |
| distortion, 21.1.20 | isotope, 10.4.3, 10.5.1 |
| preferences, 4.7.6 | iupac, 10.2.7, 10.3.20 |
| problem, 21.1.20 | javascript, 7.16 |
| multiple, 3.6.1.7 | job, 21.5.19 |
| quality, 3.6.3.11 | jobs, 13.1.7 |
| quick, 3.6.1.14, 6.15.2 | join, 10.29 |
| images, 6.15 | jpg, 6.15 |
| impose, 12.2.2 | means, 16.7.1 |
| improve model, 11.1.3 | kcc, 14.3.1, 14.5 |
| in-a-window, 21.1.7 | keep carboxyls neutral, 12.1.6 |
| inchi, 10.17.3 | kernel regression, 14.3.1 |
| increment, 16.1.27 | chemical, 10.4.10 |
| id, 16.1.27 | keyboard mouse, 6.11 |
| index, 21.9.6 | keystokes in chem-edit, 10.4.10 |
| models, 14.1.2 | kmz, 3.7.6, 6.3.7 |
| induced, 21.5.15 | knime, 19 |
| fit, 12.2, 12.2.1, 12.2.3, 15.14, 20.12, 20.12.1 | label, 4.7.7, 16.7.4, 21.2.17 |
| insert, 7.6.4 | atoms, 6.8.2 |
| column, 16.1.26 | color, 6.8.7 |
| image, 7.6.3, 16.1.34 | move, 6.8.4 |
| table, 16.1.34 | residues, 6.8.3 |
| row, 16.1.33 | sites, 6.8.6 |
| 2D, 3.7.3 | receptor contacts, 15.3.12 |
| 3D, 3.7.3, 6.8.1 | display, 5.2 |
| atom, 6.8.1 | interaction, 10.6 |
| atoms, 6.8.2 | strain, 15.3.10 |
| color, 6.8.7 | surface, 5.2.2 |
| custom, 6.8.8 | tether, 15.12 |
| delete, 6.8.1, 6.8.9 | ligand-based, 13, 13.3 |
| distance, 6.8.10 | convert, 9.20.1 |
| drag, 3.6.3.16 | editor, 15, 15.1 |
| move, 3.6.3.16, 6.8.4 | binding.re-dock ligand, 15.9 |
| residue, 6.8.1 | display, 15.3 |
| residues, 6.8.3 | edit, 15.5 |
| site, 6.8.1 | energy, 15.3 |
| sites, 6.8.6 | hydrogen.bond, 15.3 |
| variable, 6.8.1 | pocket, 15.3 |
| variables, 6.8.5, 21.2.18 | preferences, 15.2 |
| labeling, 6.8.1 | restraint, 15.12 |
| labels, 6.8, 10.3.28 | surface, 15.3 |
| distances, 6.8.10 | tether, 15.12 |
| tab, 3.7.3 | optimization, 20.11.3 |
| landscape, 4.7.6 | pocket, 4.1.8 |
| large chemical space, 20.6.4 | receptor.contact, 5.5.3 |
| font, 21.1.16 | ligand_pocket_interactions, 5.2.4 |
| size, 21.1.9 | ligedit distance restraint, 15.12.2 |
| sdf, 10.1.2 | tab, 3.7.5 |
| layer, 6.14 | tether, 15.12.1 |
| layers, 6.14 | light, 3.7.2 |
| learn, 10.18, 10.19, 11, 11.1, 16.6, 21.8.12 | tab, 3.7.2 |
| learning, 11 | lighting, 6.3.9.4, 6.5 |
| theory, 11.5 | likeness, 10.11, 21.8.9 |
| least.squares, 16.4.16 | line, 4.7.5, 16.7.4, 21.2.12 |
| library, 10.32.4 | lineWidth, 4.7.3 |
| reaction, 20.6.10 | link, 8.3.9 |
| license, 21.1.4 | structure to alignment, 20.4 |
| ligand, 5.2.2, 10.6, 10.24, 10.24.1, 10.24.2, 12.1.1, 12.2, 12.6.6, 12.6.7, 15.3.12, 15.3.13, 15.5.8, 15.10, 15.11, 21.4.5, 21.4.11, 21.5.2, 21.5.9, 21.8.8 | links, 4.6.20 |
| based screen, 10.36.3, 13.3 | linux, 10.10.1 |
| best replace, 15.6 | lipinski rule, 10.31 |
| binding, 9.15 | list, 4.6.18 |
| code, 4.2.1.3, 4.2.7 | lmhostid, 21.1.18 |
| considerations, 12.1.1.2 | load, 3.6.1.3, 3.6.1.17, 5.3.4, 5.3.6, 5.3.7, 8.1 |
| editor, 15, 15.10, 15.10.1, 15.17, 15.18 | example alignment, 8.3.14 |
| bioisostere, 15.8 | nmr model, 4.2.1.4 |
| covalent docking, 15.17 | protein structure, 5.1.1 |
| mrc, 15.16 | sequence, 8.1 |
| preferences, 3.6.2.18 | extract pdb, 8.1.3 |
| energetics, 10.24 | from file, 8.1.4 |
| conformational entropy, 10.24.1 | paste, 8.1.2 |
| strain, 10.24.2 | swissprot, 8.1.1 |
| pocket, 5.2.4, 21.4.11 | libraries, 9.20.6 |
| surface, 15.3.2 | local, 21.2.24, 21.2.25 |
| database.browse, 17.2 | maps, 12.1.4, 12.1.5, 12.6.8, 20.12.1, 21.2.27, 21.2.28, 21.5.9 |
| edit, 17.3 | mark, 16.1.45 |
| query, 17.4 | row, 16.1.45 |
| row, 17.3 | shape, 16.4.13 |
| localpdb, 21.2.24 | size, 16.4.13 |
| localseq, 21.2.25 | markush, 10.25.7, 10.32.1, 10.32.3, 10.33.1, 20.11.3 |
| lock, 6.3.10, 6.13.1, 10.3.31 | docking, 20.11.3 |
| log, 16.4.6, 16.4.11 | library, 20.6.8 |
| logP, 10.4.9, 10.11 | mass, 21.4.22 |
| logS, 10.4.9, 10.11 | matched pair, 10.33.6, 20.6.11 |
| logarithmic, 16.4.11 | analysis, 10.33.6 |
| logout, 3.6.1.19 | materials, 3.7.6 |
| loop, 9.2, 9.4, 21.2.20 | max, 16.7.1 |
| analysis, 9.6 | maxColorPotential, 4.7.10 |
| design, 9.3 | maximum common substructure, 10.25.6, 10.27, 10.27.1 |
| find pdb segments, 9.6 | dendrogram, 10.27.1 |
| model, 9.2, 9.3, 20.5.2 | mcs, 10.25.6, 10.27.1 |
| tutorial, 20.5.2 | rgroup decomposition, 10.25.7 |
| modeling, 9.1.4.2, 9.5, 9.6, 9.20.10 | mean, 16.4.6, 16.4.23, 21.4.7 |
| preferred residues, 9.5 | measure distance, 21.8.16 |
| model, 9.20.9 | to ring, 21.8.16 |
| sample, 9.20.9 | median, 16.4.6, 16.4.23 |
| energy water, 9.20.17 | memory, 10.1.2 |
| mac, 10.10.1, 21.1.9, 21.1.16 | menu, 7.6.5 |
| font, 21.1.16 | chemistry, 3.6.14 |
| size, 21.1.16 | docking, 3.6.15 |
| machine learning, 20.13 | homology, 3.6.13 |
| macrocycles, 9.19 | molmechanics, 3.6.16 |
| macros, 7.14 | tools chemical search, 3.6.11 |
| macroshape, 3.6.3.22, 6.3, 6.3.6 | molecular editor, 3.6.12 |
| make, 6.10.7.1, 16.1.1 | windows, 3.6.17 |
| alignment, 8.6.1 | merge, 10.29, 21.4.5 |
| animation, 6.10.7.1 | two sets, 10.29 |
| apf docking sar model, 14.6 | mesh, 5.2.1, 5.2.2, 5.3.4, 5.3.6, 5.3.7, 6.3, 6.3.9.1, 6.3.9.2, 6.3.9.4, 6.3.10, 6.3.11, 6.3.12, 6.13.1 |
| complex, 13.1.10.6, 15.21 | clip, 6.3.10 |
| flat, 21.8.13 | color lighting, 6.3.9.4 |
| molecular document, 7.6 | options, 6.3.9 |
| molt, 17.1 | representation, 6.3.9.3 |
| receptor maps, 12.1.5 | save, 6.3.11 |
| selection, 4.6 | options, 6.3.9 |
| bond, 21.4.2 | meshes, 6.3.2, 6.10.5 |
| disulfide, 9.9, 21.4.17 | surfaces grobs, 6.3 |
| molecule, 3.6.1.1 | tab, 3.7.6 |
| object, 3.6.1.1 | metabolic oxidation, 14.7 |
| making molecular slides, 7.1 | min, 16.7.1 |
| html, 7.6 | minimization, 9.17 |
| color, 16.4.14 | cartesian, 9.20.8 |
| manual change torsion, 15.5.4 | global, 9.20.8 |
| map, 4.7.7, 5.3.4, 5.3.6, 5.3.7 | local, 9.20.8 |
| cel, 5.3.5 | minimum specifications, 1 |
| type, 6.8.2 | sample loop, 9.20.9 |
| mmp, 20.6.11 | peptide, 9.20.12 |
| mnSolutions, 4.7.10 | protein, 9.20.11 |
| model, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 9.17, 20.5 | terms, 9.20.18 |
| domain interaction, 9.17 | view stack, 9.20.15 |
| start, 9.1.1.2 | modeling, 9 |
| weight, 11.1.2 | table, 10.17.2 |
| modelers view, 9.1.4.1 | weight, 10.4.9 |
| view, 9.1.4.1 | molecule, 21.2.8, 21.8.3 |
| modeling, 9.20.3 | editor, 10.4 |
| options, 9.1.1.1 | moledit, 10.4.8 |
| modeller view, 9.1.4 | molmechanics, 21.9.8 |
| modification history, 15.5.6 | minimize, 9.20.8 |
| modify, 9.11 | mmff, 9.20.6 |
| amino acid, 9.11 | molscreen, 13, 14 |
| group, 9.10 | custom model panel, 14.4 |
| mol, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13, 20.11.2 | load models, 14.1.1 |
| mol2, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 | run, 14.1 |
| molcart, 10.10, 10.10.1, 10.10.2, 10.10.3, 10.10.4, 10.10.5, 17, 18, 21.1.3, 21.8, 21.8.1, 21.9.3, 21.9.4, 21.9.5, 21.9.6 | model type, 14.3 |
| add database, 10.10.3 | results, 14.2 |
| administration, 10.10.5 | molskin, 6.3.2 |
| connect, 21.9.2 | molt, 17, 17.4 |
| download dbs, 21.9.3 | monitor, 21.8.10 |
| hostid, 21.9.1 | monochrome, 10.3.28 |
| installation, 10.10.1 | montecarlo, 21.9.7 |
| license, 21.1.4 | mouse, 4.1.3, 6.11, 6.12 |
| search, 10.10.4 | mov, 6.16, 6.16.2 |
| start, 10.10.2 | move, 3.6.3.19, 4.1.11, 4.1.13, 5.2.3.2, 6.3.9.1, 6.3.9.2, 6.12, 6.12.7, 9.17, 21.4.5 |
| connect, 21.9.2 | column, 16.1.28 |
| hostid, 21.9.1 | mesh, 6.3.9.2 |
| license, 21.9.1 | slide, 7.4.2 |
| molclart, 21.1.4 | structure, 6.12 |
| molecular, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.20, 21.8.7, 21.8.10 | tools, 6 |
| animations slides, 7 | rotate, 6.11 |
| documents, 20.2 | slab, 6.11 |
| editor, 21.8.2 | translate, 6.11 |
| graphics, 6 | z-rotation, 6.11 |
| matched pairs, 20.6.11 | zoom, 6.11 |
| mechanics, 9.20 | movie, 6.16.1, 21.2.19, 21.9.7 |
| convert, 9.20.1 | montecarlo, 21.9.7 |
| design loop, 9.20.10 | making, 6.16, 6.16.2 |
| edit structure, 9.20.5 | open, 6.16, 6.16.2 |
| gamess, 9.20.16 | mpa, 20.6.11 |
| generate normal mode stack, 9.20.14 | mpeg, 6.16, 6.16.1, 6.16.2 |
| his asn, 9.20.2 | mpg, 6.16, 6.16.2 |
| ic table, 9.20.13 | mpo, 10.31 |
| impose conformation, 9.20.4 | multi apf super, 10.35.3 |
| minimize, 9.20.8 | panel, 6.2 |
| mmff, 9.20.6 | parameter optimization, 10.31 |
| regularization, 9.20.3 | template, 9.1.4.3 |
| multiple, 12.2.2, 20.12.1 | password, 3.6.1.4, 4.4.1 |
| chain, 9.1.2.2, 9.1.3.1 | optimal, 5.6.5, 12.6, 12.6.2, 12.6.3 |
| position group scan, 15.7 | optimize, 9.20.2 |
| rec, 12.2.2 | oracle, 18 |
| receptor, 4.2.2, 20.12 | orange, 4.6.5 |
| docking, 15.16 | selection, 4.6.5 |
| protein, 21.2.5 | origin, 6.8.11, 21.2.10 |
| mutant, 9.10, 21.4.13, 21.4.14 | other selection, 4.6.19 |
| mutate, 9.12, 9.13, 21.4.15 | outside, 21.5.9 |
| residue, 21.4.13 | overlay, 20.3.3, 21.2.5, 21.4.6 |
| N C, 21.4.14 | package.activeicm, 7.13 |
| mutation, 9.10, 9.12, 9.13, 9.15, 20.5.3, 20.5.4, 21.4.13, 21.4.14 | packing, 5.3.1 |
| protein binding, 9.12 | pages, 18.7 |
| ligand, 9.15 | pairwise, 10.35.1, 10.35.2 |
| peptide, 9.14 | apf score, 10.36 |
| stability, 9.13 | parallelization, 13.1.8 |
| mysql, 18 | password, 10.10.5 |
| navigate workspace, 4.6.10 | paste, 10.4.11, 10.4.17, 16.1.35 |
| nearest, 21.4.22 | pbs, 13.1.7 |
| new, 8.1 | pca, 16.5 |
| icm session, 3.6.1.2 | pdb, 3.6.1.7, 4.2, 4.2.1.1, 4.2.7, 4.5, 5.1.3, 10.7.1, 20.3, 21.2.24, 21.2.25, 21.4.4 |
| table, 16.1.1 | chem gl, 10.7.3 |
| table, 16.1.1 | iw, 10.7.2 |
| nmr, 21.4.18 | dormat, 4.5 |
| model, 4.2.1.4 | file, 21.4.3 |
| nof, 10.11.2 | html, 4.2.1.6 |
| chemical, 10.11.2 | preparation, 20.3.11 |
| non-contiguous selection, 4.6.18 | search, 4.2.1, 4.2.1.2, 4.2.1.3, 20.3.1 |
| normal modes, 9.20.14 | convert, 9.20.1 |
| number of sp3, 10.11.2 | recent, 3.6.1.18 |
| numbers, 10.3.28 | search, 3.7.4, 4.1.2 |
| nvidia, 21.1.2 | pdbsearchfield, 3.6.2.13 |
| object, 4.1.11, 4.5, 20.3, 21.2.8 | pdbsearchhomology, 3.6.2.15 |
| objects, 5.1.2 | pdbsearchidentity, 3.6.2.14 |
| in table, 16.3 | pdbsearcsequence, 3.6.2.16 |
| in.table, 16.3 | peptide, 4.3, 9.14, 9.19 |
| occlusion, 6.3.12, 6.10.5 | modeling, 9.19 |
| shading, 6.3.12 | percentage similarity, 8.7.15, 20.4.4 |
| effect, 6.10.5 | perspective, 3.6.3.9, 6.10.6 |
| occupancy, 6.1.3, 20.3.10 | ph4, 10.5.6 |
| display, 4.2.1.5 | draw 2d, 10.5.6.1 |
| oda, 5.6.5, 12.6, 12.6.2, 12.6.3 | 3d, 10.5.6.2 |
| older version, 3.6.1.10 | search, 10.5.6.3 |
| omega, 6.8.5, 21.2.18 | pharmacophore, 10.3.35, 10.5.6.5, 20.8.2 |
| online databases, 10.5.5 | 2D, 20.6.6 |
| open, 3.6.1.3, 4.4, 16.1.2 | 3D, 20.6.5 |
| file, 4.4 | clone, 10.5.6.2 |
| password, 4.4.1 | draw2D, 10.5.6.1 |
| with password, 3.6.1.4 | draw3D, 10.5.6.2 |
| movie, 6.16, 6.16.2 | edit, 10.5.6.1, 10.5.6.2 |
| new, 10.5.6.2 | screen, 13.1.10 |
| search, 10.5.6, 10.5.6.3, 20.6.5, 20.6.6 | postscript, 4.7.6 |
| phi, 6.8.5, 21.2.18 | potential mean force, 13.1.4 |
| phylogenetic, 8.7.8 | powerpoint, 20.2, 21.3 |
| phylogeny, 8.7.8 | ppbatch, 12.6.9 |
| picking, 6 | ppepitope, 12.6.7 |
| picture, 3.6.1.14, 4.1.14, 6.15.2, 7.6.3 | ppmaps, 12.6.8 |
| tips, 4.1.14 | pprefine, 12.6.11 |
| chart, 16.4.8 | ppresults, 12.6.10 |
| pka, 10.15 | pproc, 12.6.3 |
| planar, 5.5.7, 6.8.5, 21.2.18 | ppsetligand, 12.6.6 |
| angle, 5.5 | ppsetproject, 12.6.4 |
| angle, 6.9.2 | ppsetreceptor, 12.6.5 |
| plane, 6.3.10, 6.13, 6.13.1, 6.14, 21.2.11, 21.2.19, 21.2.21 | ppt, 7.12, 7.14, 21.3.3 |
| faq, 21.2.21 | predict, 8.3.2, 10.18, 10.19, 11, 11.2, 16.6, 21.8.9, 21.8.12 |
| plot, 4.7, 4.7.8, 13.1.10.2, 16.4, 16.4.1, 16.4.4, 16.4.9, 16.4.11, 16.4.13, 16.4.14, 16.4.15, 16.4.16, 16.4.17, 16.4.18, 16.4.20, 16.4.21, 16.4.22, 16.4.23 | disulfide, 9.16 |
| R group sar, 10.33.4 | metabolic oxidation, 14.7 |
| axis, 16.4.11 | predicting bioassays, 11.2 |
| color, 16.4.14 | compound properties, 11.2 |
| columns, 16.4.6 | prediction binding, 9.12 |
| function, 3.6.9, 3.6.9.1 | preferences, 4.7, 13.1.5, 21.2.24, 21.2.25 |
| grid, 16.4.15 | preferred residues, 9.5 |
| header, 16.4.9 | presentatio, 7.6.5 |
| inline, 16.4.22 | presentation, 7.7, 7.12 |
| logarithmic, 16.4.12 | presentations, 7 |
| mark, 16.4.13 | preserve, 21.8.6 |
| mean median iqr, 16.4.23 | press-and-hold to rotate, 10.4.8 |
| point label, 16.4.19 | pretty view, 15.3.6 |
| preferences, 4.7.8 | primary aliphatic amines, 10.15 |
| groups, 16.4.25 | principal component analysis, 16.5 |
| regression, 16.4.16 | regression, 11 |
| selection, 16.4.18 | components, 11.5 |
| zoom translate, 16.4.17 | print, 6.7, 16.4.20, 16.7.3 |
| axis, 16.4.15 | alignment, 8.7.4 |
| display, 16.4.15 | plot, 16.4.20 |
| grid, 16.4.15 | alignment, 8.7.4 |
| inline, 16.4.22 | printer.resolution, 4.7.6 |
| logarithmic, 16.4.12 | pro-drug, 10.23 |
| pls, 10.18, 10.19, 11, 16.6, 20.13 | probe, 12.1.4, 21.5.13 |
| pmf, 21.5.6 | problem, 21.1.14 |
| png, 3.6.1.14, 6.15, 6.15.2, 7.6.3, 10.2, 10.2.6 | with selection, 21.1.12 |
| pocket, 4.1.8, 5.2, 5.2.1, 5.2.2, 5.6.6, 12.1, 20.3.7, 21.2.14, 21.4.11, 21.5.10 | prodrug, 10.23 |
| conservation, 21.4.12 | profile, 8.3.8 |
| surface, 5.2.1, 13.1.11 | project, 3.6.1.5, 12.6.4, 18.6, 20.6.4.6 |
| peptide, 4.1.8 | close, 3.6.1.13 |
| properties, 4.1.8 | rename, 3.6.1.9 |
| pocketome, 4.2, 4.2.2 | properties, 6.8.2, 10.11, 10.11.1, 21.8.7 |
| point label, 16.4.19 | property, 10.4.9, 21.8.7, 21.8.8, 21.8.9, 21.8.10 |
| portait, 4.7.6 | expression, 13.1.10.6 |
| post edit ligand, 15.5.8 | monitor, 10.4.9 |
| protein, 5.4.6, 8, 9.14, 21.4.5 | pdb chem gl, 5.1.3.2 |
| chain, 9.3 | iw, 5.1.3.1 |
| health, 5.6.3 | qsar, 10.18, 10.19, 11.1, 20.13 |
| model, 9.18 | learn predict, 10.18 |
| protein docking, 20.10 | predict, 10.19 |
| tutorial, 20.10 | quad buffer stereo, 21.1 |
| sculpting, 9.17 | buffer, 21.1.7 |
| structure, 5 | quality, 3.6.1.15, 4.7.5 |
| analysis, 5.5 | query, 9.1.2, 18, 18.3, 21.8.1, 21.9.5, 21.9.6 |
| closed cavities, 5.5.4 | molt, 17.4 |
| contact areas, 5.5.3 | processing, 10.5.3 |
| distance, 5.5.6 | setup, 10.5.1 |
| find related chains, 5.5.1 | quick, 4.1.14 |
| finding dihedral angle, 5.5.8 | image, 6.15.2 |
| planar angle, 5.5.7 | model multiple chain, 9.1.2.2 |
| rama export, 5.5.10 | single chain, 9.1.2.1 |
| ramachandran plot, 5.5.9 | start move structure, 4.1.3 |
| rmsd, 5.5.2 | read pdb, 4.1.2 |
| surface area, 5.5.5 | representation, 4.1.6 |
| tutorials, 20.3 | selection, 4.1.5 |
| analysis, 20.3.4 | level, 4.6.3 |
| contact area, 20.3.5 | what is selected, 4.6.4 |
| convert, 20.3.2 | dispalay.distance, 6.9.1 |
| hydrogen bond, 20.3.6 | start color, 4.1.7 |
| icmpocketfinder, 20.3.7 | quit, 3.6.1.19 |
| search, 20.3.1 | group, 10.25.7, 10.32.4 |
| superimpose, 20.3.3 | table, 10.32.2 |
| superposition, 5.4 | groups, 10.32.2 |
| select, 5.4.1 | r-group, 10.25.7, 10.32.2 |
| sites by apf, 5.4.6 | decomposition, 10.25.7 |
| superimpose 3D, 5.4.3 | enumeration, 10.25.7 |
| grid, 5.4.5 | r-groups, 16.4.25 |
| multiple proteins, 5.4.4 | racemic, 10.3.28, 10.17.5, 21.5.21 |
| protein-protein, 5.6.5, 12.6, 12.6.1, 12.6.2, 12.6.3, 12.6.4, 12.6.5, 12.6.6, 12.6.8, 12.6.9, 12.6.10 | radar, 16.4.6 |
| docking refinement, 12.6.11 | rainbow, 4.7.5, 6.8.15, 10.3.35, 21.2.38 |
| protein-proteindocking, 12.6.7 | ramachandran plot, 5.5, 5.5.10 |
| protein-protin, 20.10 | random forest, 11, 20.13 |
| convert, 9.20.1 | range, 6.10.7.2 |
| protonated, 21.4.15 | rapid isostere replacement, 13.4 |
| protonation, 12.1.1.4 | ratio.selection, 4.7.5 |
| state, 12.1.1.4 | dock ligand, 15.9 |
| protprot, 12.6 | reactions, 10.8, 10.32.5 |
| proximity, 6.3.3, 6.3.4 | reactive cysteine, 5.6.2 |
| psa, 10.4.9 | reactivity, 10.11.3 |
| psi, 6.8.5, 21.2.18 | read, 3.6.1.3, 3.6.1.17, 4.4, 8.1, 10.3.1 |
| pubchem, 10.1 | chemical, 10.1 |
| publication quality images, 6.3.2 | spreadsheet, 10.3.1 |
| pubmed, 4.2.1.7 | table, 16.1.2 |
| purple box, 3.6.3.23, 12.1.4, 15.9.1 | pdb, 4.1.2 |
| qs hydrogen bond, 5.2.3 | table, 16 |
| rear, 6.3.10, 6.13.1 | resize, 6.3.9.1, 6.15.3 |
| recent files, 3.6.1.17 | mesh, 6.3.9.1 |
| pdb codes, 3.6.1.18 | resolution, 4.2.1.3 |
| receptor, 5.2.1, 5.2.2, 10.6, 12.1.1, 12.2.2, 12.6.5, 12.6.7, 15.3.12, 20.12.1, 21.5.2, 21.5.14, 21.5.15 | restore, 3.6.2.11, 6.3.10, 6.13.1 |
| considertations, 12.1.1.1 | default, 21.1.9 |
| flexibility, 15.16 | recent backup, 3.6.2.11 |
| pocket, 15.3.1 | restrained docking, 12.1.7 |
| surface, 15.3.1, 15.3.2 | restraing, 15.12.1, 15.12.2 |
| flexibility, 20.12.2 | results, 12.6.10 |
| recover, 3.6.2.11 | stack, 12.1.12.2 |
| cylinders, 8.7.16, 21.6.2 | retrieve columns, 21.5.24 |
| lines, 8.2, 21.6.1 | from original database, 21.5.24 |
| redo, 3.6.2.10, 10.4.11, 15.5.5 | review and adjust binding site, 12.1.4 |
| refine, 9.7, 9.8 | rgroup, 10.32.4 |
| loops, 9.1.3 | ribbon, 3.7.1, 4.7.9, 6.1.3, 21.2.23, 21.2.34 |
| side chain, 9.8 | as a mesh object, 21.2.3 |
| sidechains, 9.1.3 | faq, 21.2.23 |
| refinement, 12.2.4 | preferences, 4.7.9 |
| region, 12.6.7 | style, 4.7.9 |
| regresion, 16.4.16 | breaks, 6.1.3 |
| regression, 10.33.2, 11.1, 11.5, 20.13 | cylinders, 6.1.3 |
| regul, 9.7 | smooth, 6.1.3 |
| regularization, 9.7, 9.20.3 | worm, 6.1.3 |
| relationship, 11, 16.6 | ribbonColorStyle, 4.7.9 |
| covalent geometry, 12.1.6 | ride, 13.4 |
| relaxed ligand, 15.3.9 | server setup, 13.4.1.1 |
| reload, 12.1.16, 21.5.4 | setup, 13.4.1 |
| dock results, 12.1.16 | right, 4.1.12 |
| remove, 21.2.6, 21.2.7, 21.2.10 | click, 4.1.12 |
| salt, 21.8.14 | rigid, 10.34 |
| explixit.hydrogens, 10.12 | super, 10.34.2 |
| salt, 10.12 | table, 10.34.1 |
| rename, 16.1.25 | ring, 10.4.3, 10.4.6, 10.5.1 |
| colunn, 16.1.25 | rings, 10.3.28, 10.20, 10.34 |
| project, 3.6.1.9 | rmsd, 5.5, 5.5.2, 21.4.7, 21.4.8 |
| renumber, 21.4.4 | rock, 3.6.3.15, 6.10.7, 6.10.7.1, 7 |
| reorder column, 16.1.29 | speed, 6.10.7.2 |
| replace chemical, 10.3.32 | root, 21.4.7 |
| replacement, 15.6 | mean square deviation, 5.5.2 |
| group, 15.8 | rotate, 3.6.3.15, 4.1.3, 6, 6.10.7, 6.10.7.1, 6.12, 6.12.1, 6.12.2, 7, 10.3.34, 21.8.13 |
| report, 18.3 | chemical, 10.3.34 |
| representation, 3.6.3.19 | when pasting, 10.4.8 |
| residue, 4.7.7, 21.2.8, 21.4.15, 21.4.22 | easy, 3.6.3.12 |
| alternative orientaiton, 20.3.11 | speed, 6.10.7.2 |
| content, 8.3.1 | rotating fragment in editor, 10.4.8 |
| number selection, 21.2.36 | rotation, 6.12.1 |
| range, 4.6.18 | rough surface, 21.2.37 |
| content, 3.6.4, 8.3, 8.3.1 | row, 16, 16.1.22, 16.1.35, 16.1.45 |
| mutate, 21.4.13, 21.4.14 | flag, 16.1.13 |
| residues, 5.2.1, 5.2.2, 21.2.14 | height, 16.1.7, 21.2.39 |
| hide, 10.3.8 | hopping, 15.8 |
| show, 10.3.8 | scale, 4.7.5, 21.2.38 |
| ruler, 6.8.15 | scan, 9.20.7, 12.1.12.1 |
| molscreen, 14.1.3 | hits, 12.1.12.1 |
| rundock, 21.5.16 | group, 15.7 |
| rxn, 10.4.13 | scarab, 18 |
| safari, 21.3 | add user, 18.5 |
| sali, 10.33.5 | browse export data, 18.4 |
| bridge, 20.3.6 | installation, 18.1 |
| salts, 10.3.18 | new project, 18.6 |
| sample, 9.18, 10.34 | pages, 18.7 |
| double bond cis trans, 12.1.6 | query, 18.3 |
| peptide, 9.19, 9.20.12 | upload data, 18.2 |
| protein, 9.18, 9.20.11 | scare, 12.2.4 |
| racemic centers, 12.1.6 | scatter, 13.1.10.2 |
| sar, 10.25.7, 10.33, 16.4.25 | scatterplot, 13.1.10.4 |
| analysis, 10.33 | score, 13.1.9, 15.4, 20.8.3, 20.8.5, 21.5.7, 21.5.8, 21.5.18 |
| table, 10.33.3 | threshold, 13.1.4 |
| save, 4.5, 6.3.11, 6.10.7.4, 8.1.5, 10.2.3, 16.4.21, 16.7.3, 21.2.33 | screen, 10.36, 20.8.4, 20.9, 20.11.1 |
| SMILES, 10.4.15 | screening, 13.1, 13.1.1, 13.1.2, 20.12 |
| alignment, 8.7.3 | screenshot, 6.16, 6.16.2 |
| PDB, 4.5 | movie, 6.16.2 |
| pdb, 4.5 | script, 4.3, 7.6.4, 7.6.5, 21.4.19, 21.10, 21.10.1, 21.10.2, 21.10.3 |
| chemical mol, 10.4.13 | sculpting, 9.17 |
| spreadsheet workspace, 10.2.1 | sdf, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3.35, 10.10, 10.10.3, 10.17.1, 15.10, 17.1, 18.2, 20.11.2, 21.9.3, 21.9.4 |
| to chemical spreadsheet, 10.4.14 | search, 10.10, 10.10.4, 17.2, 18.3, 21.9.6 |
| docked ligand, 15.19 | chembl, 4.2.3 |
| file, 4.5 | drugbank, 4.2.8 |
| hits, 15.5.7 | filter, 10.5.2 |
| image plot, 16.4.21 | in workspace, 3.6.2.4 |
| ligand receptor complex, 15.19 | pdb, 4.2.1 |
| object, 4.1.9 | chemical, 4.2.1 |
| pdb, 4.5 | ligand code, 4.2.7 |
| project icb, 4.1.10 | pocketome, 4.2.2 |
| sequence, 8.1.5 | pubchem, 4.2.9 |
| slide, 7.4 | surechembl, 4.2.4 |
| smiles string, 10.4.15 | tab field, 4.2.1.3 |
| table, 16.1.21 | pdb chemical, 4.2.1.1 |
| spreadsheet, 15.5.7 | sequence, 4.2.1.2 |
| tree, 16.7.3 | tautomer, 10.5.3 |
| sdf, 10.4.14 | uniprot, 4.2.6 |
| image, 3.6.1.15, 4.1.14 | in.workspace, 3.6.2.4 |
| object, 4.1.9 | secondary aliphatic amines, 10.15 |
| password, 3.6.1.11 | structure, 5.6.1, 21.2.20 |
| picture, 3.6.1.15 | sctructure, 8.3.2 |
| project, 3.6.1.8, 3.6.1.9, 3.6.1.10, 4.1.10 | structure, 3.6.4, 6.1.3, 8.3 |
| table.view, 16.1.8 | select, 4.6.12, 4.6.13, 16, 16.1.45, 21.4.22 |
| saving, 3.6.1.8 | a tree branch, 16.7.2 |
| project, 3.6.1.8 | all, 4.6.14 |
| scaffold, 10.14 | amino acid, 4.6.13 |
| molecule, 4.6.12 | links, 8.3.9 |
| neighbors, 4.6.15 | selectneighbors workspace, 4.6.17 |
| graphic, 4.6.16 | organized network, 10.27 |
| object, 4.6.11 | sequence, 3.6.4, 4.2, 4.2.1.2, 4.2.5, 4.2.6, 4.3, 8, 8.1, 8.1.5, 8.2, 8.3, 8.3.7, 8.6.1, 8.6.5, 9.1.2, 20.3, 20.4, 20.4.4, 21.4.12, 21.6, 21.6.1 |
| residue, 4.6.13, 4.6.18 | analysis, 8.3 |
| by number, 4.6.18 | editor, 8.5 |
| number, 4.6.18 | identity, 8.7.15 |
| tree, 16.7.2 | pattern, 4.2.1.2 |
| atom, 4.1.5, 4.6.3 | reordering, 8.7.8 |
| graphical, 4.1.5, 4.6.3 | secondary structure, 8.2, 21.6.1 |
| object, 4.1.5, 4.6.3 | similarity, 8.7.15 |
| purple.box, 3.6.3.23 | sites, 8.5 |
| residue, 4.1.5, 4.6.3 | structure, 8.3.6 |
| workspace, 4.1.5, 4.6.3 | type, 8.3.4 |
| selectall, 3.6.2.3 | DNA, 8.3.4 |
| selecting.neighbors, 4.6.16 | alignment, 8.3.5, 8.6.2, 8.6.6 |
| selection, 4.6.4, 4.6.5, 4.6.21, 6.3.4, 10.4.11, 16.4.18, 16.7.2, 16.7.4, 21.2.4, 21.2.6, 21.2.7, 21.2.8, 21.2.13, 21.2.32, 21.4.9, 21.4.10, 21.4.22, 21.5.14 | nucleotide, 8.3.4 |
| clear, 3.6.2.7 | protein, 8.3.4 |
| neighbors, 3.6.2.8 | search, 8.4 |
| alignment, 4.6.19 | structure.alignment, 8.3.6, 8.6.3 |
| all, 3.6.2.3 | sequences, 8, 21.2.25 |
| alter, 4.6.7 | unique, 8.3.13 |
| atom, 3.6.2.5 | extract, 8.3.13 |
| basic, 4.6.2 | unique, 8.3.13 |
| change, 4.6.7 | server error, 21.1.17 |
| clear, 3.6.2.7 | set, 10.3.31, 21.4.21 |
| column, 16.1.23 | formal charges, 10.15 |
| filter, 3.6.2.5, 4.6.8 | server, 21.1.17 |
| graphical, 4.6.16 | bond type, 9.20.5 |
| invert, 3.6.2.6, 16.1.23 | charges, 9.20.6 |
| level, 3.6.3.3 | chirality, 9.20.5 |
| mode, 3.6.3.4 | disulfide, 9.9, 21.4.17 |
| near atoms, 3.6.2.8 | bond, 9.20.5 |
| neighbors, 3.6.2.5, 3.6.2.8, 4.6.15, 4.6.17 | formal charge, 9.20.5 |
| object, 4.6.11 | tether, 9.20.5 |
| other, 4.6.19 | types, 9.20.6 |
| properties, 3.6.2.5 | setAPFparams, 21.8.12 |
| range, 16.1.23 | setup, 12.6.6 |
| residue, 3.6.2.5 | ligand receptor, 15.1 |
| row, 16.1.23 | shade, 8.7.7, 8.7.7.1 |
| sphere, 4.6.15 | alignment, 20.4.4 |
| spherical, 3.6.2.8 | shading, 6.3.12 |
| superposition, 5.4.1 | shadow, 6.10.2 |
| table, 4.6.19, 16.1.23 | share model, 11.1.4 |
| elements, 16.1.23 | sheet, 21.2.20 |
| tools, 4.6.1, 4.6.2, 4.6.7, 4.6.8 | shell preferences, 4.7.10 |
| whole, 4.6.11 | shift, 6.8.3 |
| workspace, 4.6.9, 4.6.17 | shine, 3.7.2, 4.7.5 |
| selectioninvert, 3.6.2.6 | shineStyle, 4.7.3 |
| selections, 4.6 | show, 7.3.1, 16.1.39 |
| side, 10.3.29 | specifications, 21.1.5 |
| by side, 10.3.29 | specs, 1 |
| error, 21.1.19 | faq, 21.1.5 |
| stereo, 3.6.3.6 | speed, 6.10.7.2 |
| chain refinement, 15.15 | sphere, 21.4.11 |
| chains, 9.8 | spherical, 21.4.9, 21.4.12 |
| side-by-side, 21.1.19 | split, 10.33.1 |
| side-chain sampling, 12.6.11 | spreadsheet, 10.17.2 |
| side-chains, 12.2.1 | square, 21.4.7 |
| sigmaLevel, 5.3.6, 5.3.7 | squence.amino acid, 8.3.4 |
| similarity, 10.28 | stability, 9.13, 20.5.3, 20.5.4 |
| simulation, 21.9.8 | stack, 9.18, 12.1.12, 12.6.10, 21.9.8 |
| length, 21.5.12 | standalone hitlist, 12.1.14 |
| simulations, 21.7 | standard table, 16.1 |
| single, 10.4.10 | standardize, 10.12 |
| chain, 9.1.2.1 | table, 10.12 |
| singlet, 10.4.7 | start, 10.10.2 |
| sites, 5.4.6 | dock, 12.1 |
| size, 5.2.3.1 | startup, 21.10.2 |
| sketch accents, 6.10.3 | static, 21.4.8 |
| markush, 10.32.1 | stereo, 4.7.6, 6.6, 10.3.28, 10.4.2, 21.1, 21.1.6, 21.1.7, 21.1.14 |
| reaction, 12.4.1 | bond, 10.4.2 |
| smiles, 10.4.12 | hardware, 3.6.3.7 |
| accents, 3.6.3.14, 6.10.3 | side-by-side, 3.6.3.6 |
| skin, 3.7.1, 6.1.4, 21.2.16 | stereohard faq, 21.1.6 |
| slab, 6.3.10, 6.13.1 | stereoisomer, 10.17.5 |
| slice, 6.13 | stereoisomers, 10.22 |
| slide, 6.10.7.4, 7.2, 7.3.1, 7.6.1, 21.2.31 | stick, 4.7.5 |
| effects, 7.5 | stl, 6.7 |
| movie, 6.16.1 | stop, 6.10.7.3 |
| file, 7.2 | store, 3.6.3.19, 6.10.7.4, 21.2.22 |
| navigation, 7.3.2 | current view, 3.6.3.19 |
| show, 7.3 | faq, 21.2.22 |
| blend, 7.5 | strain, 5.6.3, 10.24, 10.24.2, 15.4 |
| edit, 7.4.1 | strip, 21.4.9 |
| effect, 7.5 | structure, 5.3.3, 11, 16.6, 20.3, 21.4 |
| smooth, 7.5 | analysis, 20.3.4 |
| transition, 7.5 | ensemble, 9.20.14 |
| slides, 6.16.1, 7, 7.1, 7.3, 21.2.30 | representation, 6.1 |
| smiles, 10.4.9, 10.11, 10.17, 10.17.3, 10.17.4 | smiles, 10.17.4 |
| smooth, 6.3.9.3 | structure-based, 13 |
| surface, 21.2.37 | structures, 10, 10.1 |
| solid, 6.3.9.3 | style, 4.7.5 |
| solvent.accessible.area, 21.4.19 | substituent, 10.9.1, 10.9.2, 10.32.2, 15.5.2 |
| sort hitlist, 13.1.10.1 | substructure, 10.10.4, 10.13, 12.3, 21.8.1, 21.9.5 |
| table, 3.6.10.4 | template, 15.13 |
| sorting, 13.1.10.1 | alerts, 10.13 |
| compounds, 16.7 | suface, 21.4.19 |
| sp3, 10.11.2 | sulfur, 9.9 |
| spec, 3.7.2 | superimpose, 3.6.8, 5.4.2, 5.4.6, 20.3.3, 21.2.5, 21.4.6, 21.4.7, 21.4.8 |
| Calpha, 5.4.3 | selection, 16.1.3 |
| arrange.grid, 5.4.5 | search, 16.1.9 |
| backbone, 5.4.3 | select, 16.1.23 |
| flexible, 10.34.3 | setup, 16.1.18 |
| heavy atoms, 5.4.3 | sort, 16.1.42 |
| multiple, 5.4.4 | split fragments, 10.3.33 |
| rigid, 10.34.1, 10.34.2 | view, 16.1.5 |
| substructure, 10.34.1, 10.34.2, 10.34.3 | save, 16.1.8 |
| superposition, 10.34, 10.35.1, 10.35.2, 20.3.3, 20.8.1 | zoom translate, 10.3.30 |
| surface, 3.7.1, 4.7.5, 5.2.1, 5.2.2, 6.1.6, 6.3, 6.3.3, 6.3.4, 21.2.16, 21.2.37 | action, 16.1.47 |
| area, 5.5 | alignment, 16.1.12 |
| area, 5.5.5 | append, 16.1.43 |
| surfaces, 5.2, 6.3.1, 6.3.2, 6.10.5 | clone, 16.1.16 |
| surrounding, 21.4.11 | color, 16.1.10 |
| swissprot, 8.1, 8.5 | column, 10.3.4, 16.1.26, 16.1.32, 16.1.39 |
| sxstrace, 21.1.19 | columns, 10.3.8 |
| symmetric oligomer, 9.1.3 | compare, 10.3.22 |
| symmetry, 5.3.1, 5.3.3, 20.3.8, 20.3.9 | copy, 10.3.6 |
| system preferences, 4.7.11 | cursor, 16.1.47 |
| tab, 16.1.2, 16.1.21 | delete, 16.1.14, 16.1.17 |
| pdb, 3.7.4 | display, 21.10.4 |
| table, 4.3, 10.1.3, 10.3.24, 10.3.25, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.17.2, 10.20, 10.34.1, 15.10, 16, 16.1.6, 16.1.35, 16.1.40, 16.1.45, 16.4, 16.4.1, 16.4.4, 16.4.9, 16.4.11, 16.4.13, 16.4.14, 16.4.15, 16.4.16, 16.4.17, 16.4.18, 16.4.20, 16.7.1, 21.4.19, 21.8.4, 21.8.5, 21.8.7, 21.8.8 | double.click, 16.1.47 |
| alignment, 16.1.12 | edit, 10.3.17 |
| clone, 16.1.16 | excel, 10.3.10, 16.1.20 |
| color, 16.1.10 | filter, 10.3.12, 16.1.43 |
| column format, 16.1.40 | find-replace, 10.3.13 |
| copy, 16.1.36, 16.1.37 | to screen, 16.1.4 |
| delete, 16.1.17 | font, 16.1.11 |
| edit, 16.1.24 | foreground, 21.10.4 |
| filter, 16.1.43 | grid lines, 16.1.4 |
| find, 16.1.9 | hide, 16.1.39 |
| replace, 10.3.32 | hyperlink, 10.3.15 |
| font, 16.1.11 | insert, 16.1.33 |
| size, 21.2.1 | join, 3.6.10.5 |
| grid, 16.1.5 | label, 10.3.14 |
| histogram, 16.4.1 | landscape, 16.1.18 |
| insert, 16.1.26 | mark, 10.3.14 |
| layout, 16.1.5 | merge, 3.6.10.5, 10.3.23, 10.29 |
| learning, 16.6 | mouse, 16.1.47 |
| mark, 16.1.13 | name, 16.1.15 |
| row, 16.1.13 | new, 16.1.1 |
| mouse, 16.1.47 | options, 16.1.14 |
| navigation, 16.1.4 | orientation, 16.1.18 |
| new column, 16.1.26 | portrait, 16.1.18 |
| plot, 16.4 | print, 10.3.11, 16.1.4, 16.1.19 |
| print, 16.1.19 | read, 16.1.2 |
| rename, 16.1.15 | rename, 16.1.15 |
| rightclick, 16.1.14 | right click, 16.1.14 |
| row height, 21.2.39 | row, 16.1.33 |
| save, 16.1.3 | rows, 3.6.10.7 |
| scale, 16.1.18 | transitions, 7, 21.2.30 |
| scroll, 16.1.4 | translate, 4.1.3, 6, 6.12, 10.3.30 |
| sdf, 10.3.9 | translation, 6.12.3, 8.3.3, 16.4.17 |
| select, 16.1.23 | transparent, 6.3.9.3 |
| setup, 16.1.18 | background, 6.15.3 |
| sort, 3.6.10.4, 10.3.5, 16.1.42 | ribbon, 21.2.3 |
| standard, 16.1 | surface, 21.2.37 |
| view, 10.3.29 | tree, 8.7.8, 10.25.7, 16.7.2, 16.7.3, 16.7.4 |
| width, 16.1.4 | branch swapping, 8.7.8 |
| tables, 10.28, 16 | distance, 10.25.3 |
| tag, 4.6.21, 15.5.7, 16.1.46 | edit, 10.25.4 |
| tags, 4.6.21 | reorder, 10.25.3 |
| tautomer, 10.21, 21.4.15 | triplet, 10.4.7 |
| tautomers, 10.21 | trouble shooting, 21.1.11 |
| temperature, 5.6.4 | trouble-shooting, 21.1.12 |
| template, 9.1.2, 10.4.6, 10.34 | truncating a mesh object, 21.2.15 |
| docking, 21.5.3 | crash qlock, 21.1.13 |
| templates, 10.4.6 | tsv, 16.1.21 |
| terminal, 10.3.28 | tut analyze alternative orientations, 20.3.11 |
| font size, 21.2.1 | occupancy, 20.3.10 |
| tether, 12.1.7, 15.12.1, 15.12.2 | symmetry, 20.3.9 |
| text, 4.7.7, 7.6, 7.6.1, 7.6.7, 10.3.28, 10.10.4, 16.4.24, 21.9.6 | multiple receptor, 20.12.1 |
| search, 10.5.4 | tut3, 20.5 |
| texture, 3.7.6 | tut3e, 20.3.12 |
| thoroughness, 10.20, 10.34, 21.5.12 | tut5a, 20.9.1 |
| three, 10.3.24, 21.8.6 | tut5b, 20.9.2 |
| threshold, 4.7.5 | tut5c, 20.11.1 |
| tier, 4.1.13 | tut5e, 20.11.2 |
| time, 21.5.11 | tutorial 2D pharmacophore, 20.6.6 |
| machine, 21.1.15 | 3D pharmacophore, 20.6.5 |
| racemic, 10.17 | chemical clustering, 20.6.3 |
| tools 3D, 3.6.6 | search, 20.6.2 |
| analysis, 3.6.7 | molecular documents, 20.2 |
| append rows, 3.6.10.7 | sequence alignment, 20.4 |
| extras, 3.6.9 | link, 20.4.2 |
| plot function, 3.6.9.1 | load sequence, 20.4.1 |
| superimpose, 3.6.8 | sequence conservation, 20.4.3 |
| table, 3.6.10 | tutorials, 20 |
| Learn, 3.6.10.1 | two, 10.3.24, 21.8.6 |
| clustering, 3.6.10.3 | ubuntu, 21.1.18 |
| merge, 3.6.10.5 | unclip, 6.3.10, 6.13.1 |
| predict, 3.6.10.2 | undisplay, 4.1.4, 6.1.7, 21.2.10, 21.2.32 |
| tooltip, 16.4.26 | box shade font, 8.7.7.1 |
| balloons, 16.4.26 | origin, 6.8.11 |
| torsion, 6.12.6, 9.20.7, 15.5.4, 21.4.16 | undo, 3.6.2.9, 4.7, 10.4.11, 15.5.5 |
| angles, 6.12, 6.12.6 | redo, 15.5.5 |
| scan, 9.20.7 | uniprot, 4.2.6, 8.5 |
| toxscore, 10.11.3 | unique, 10.3.28, 10.30 |
| trace, 6.1.10 | unit, 5.3.3 |
| transition.blend, 21.2.31 | units, 21.5.1 |
| unsatisfied hydrogen bonds, 15.3.8 | scatter plot, 13.1.10.2 |
| hyrdrogen bonds, 15.3.8 | introduction, 13.1.1 |
| unusual peptide, 4.3 | preferences, 13.1.4 |
| upload, 18.2 | results, 13.1.9 |
| use activeicm, 7.12 | run, 13.1.6 |
| user, 10.10.5, 18.5 | scatterplot, 13.1.10.4 |
| defined groups, 15.5.3 | visualization, 13.1.11 |
| modifiers, 15.5.3 | results, 13.1.9 |
| user-defined groups, 10.4.5 | volume, 10.4.9 |
| uundisplay-all, 3.6.3.1 | water, 9.20.17 |
| van der waal, 6.8.14 | waters, 9.20.17 |
| variable, 4.7.7, 21.2.8 | wavefront, 3.7.6, 6.3.11 |
| verbose, 10.20 | weak, 21.4.20 |
| large sdf files, 10.1.2 | web, 20.2 |
| vicinity, 10.20 | browser, 3.6.1.12 |
| video, 2, 6.16, 6.16.1, 6.16.2 | weight, 10.11, 21.8.7, 21.8.10 |
| view, 3.6.3.19, 7.3.1, 10.3.28, 21.2.22, 21.9.8 | weighted, 16.7.1 |
| animate view, 3.6.3.15 | width, 16.1.22 |
| center, 3.6.3.20 | window, 4.1.13 |
| color background, 3.6.3.18 | windows, 4.1.13.1, 10.10.1 |
| dock results, 12.1.12 | wire, 3.7.1, 4.7.5, 6.1.1, 21.2.4, 21.2.21 |
| fog, 3.6.3.5 | wireBondSeparation, 4.7.1 |
| macroshape, 3.6.3.22 | working directory, 21.5.23 |
| menu, 3.6.3 | workspace, 4.1.4, 5.1.3.1, 10.7.2 |
| mesh clip, 6.13.1 | panel, 4.1.4 |
| perspective, 3.6.3.9 | selection, 4.6.9 |
| selection level, 3.6.3.3 | navigation, 4.6.10 |
| mode, 3.6.3.4 | write, 4.1.14, 4.5, 16.4.21, 21.9.4, 21.9.7 |
| shadow, 3.6.3.13 | alignment, 8.7.3 |
| sketch accents, 3.6.3.14 | excel, 10.2.3 |
| slide show, 7.3.1 | image, 3.6.1.15, 21.1.20 |
| tools, 3.6.3 | images, 6.15 |
| tree, 16.7.4 | pdb, 4.5 |
| undisplay all, 3.6.3.1 | image, 3.6.1.15 |
| stach, 9.20.15 | object, 4.1.9 |
| virtual, 13.1, 13.1.1, 13.1.2, 20.9, 20.11.1 | picture, 3.6.1.15 |
| ligand screening, 14 | project, 3.6.1.8, 4.1.10 |
| screen, 13.3, 13.4 | table, 16.1.3 |
| screening, 13, 13.2 | writing a pdb file, 21.4.3 |
| examples, 20.11 | ray, 3.6.5 |
| virus, 5.3.3 | xi, 6.8.5, 21.2.18 |
| visualize, 10.27 | xls, 10.2.3 |
| apf fields, 15.3.11 | xlsx, 10.2.3 |
| chemical space, 10.27 | xml, 18.2 |
| ligand strain, 15.3.10 | xstick, 6.1.2, 21.2.21 |
| vls, 12.2, 12.2.3, 13, 13.1, 13.1.6, 13.1.10.6, 13.3, 20.11.2, 21.5.7, 21.5.8, 21.5.24 | xyz, 21.2.10 |
| analysis, 13.1.10.6 | youtube, 2 |
| display, 13.1.10.5 | zoom, 4.1.3, 6, 6.12, 6.12.4, 10.3.30, 16.4.17 |
| getting started, 13.1.2 | |
| histogram, 13.1.10.3 | |
|