Jul 1 2004
Contents
 
Introduction
 Release notes
 Brief history of ICM
 ICM distribution and support
 What can you do with ICM? (a program overview)
 Notational conventions
 Common abbreviations
 Getting started
Reference Guide
User's guide
References
Glossary
 
Index
Prev
1.6 Common abbreviations		Next
In addition to the abbreviated ICM-shell-objects prefixes (see above), abbreviations may be used for energy terms, and some other frequently used words.
abbr.description
as_ atom selection
alialignment
confconformation
cn distance restraints
grad gradient
ey energy
hb hydrogen bonds
ls list
ms_ molecular selection
MC, mcmontecarlo
MB Mouse Button
mn maximal number of items
n number of items
os_ object selection
re, res residue
rs_ residue selection
rs variable restraint
seqsequence
to torsion
tz tether
ty type
va, varvariable internal coordinate in a molecule (torsions, phase angles, planar angles, bond lengths).
vw van der Waals
wt weight

It is convenient to declare these abbreviations as aliases to the corresponding full words in the _startup file for fast typing. For example: 
 
 ls seq
instead of 
 
 list sequence

Prev
nota		Home
Up		Next
getstarted

Copyright© 1989-2004, Molsoft,LLC - All Rights Reserved.
This document contains proprietary and confidential information of Molsoft, LLC.
The content of this document may not be disclosed to third parties, copied or duplicated in any form,
in whole or in part, without the prior written permission from Molsoft, LLC.