ICM User's Guide: Sequence Secondary Structure

Feb 13 2026 Feedback.

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Contents


Introduction
Help Videos
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Sequences & Alignments
Read and Save
Secondary Structure
Bioinfo Menu
BLAST Search
Sequence Editor
Alignments
Editor
Color Structure by Alignment
Protein Modeling
Cheminformatics
Learn and Predict
Docking
Virtual Screening
Molecular Dynamics
MolScreen
3D Ligand Editor
Tables and Plots
Local Databases
ICM-Scarab
KNIME
Tutorials
FAQs

Index

ICM User's Guide
8.2 Sequence Secondary Structure

If a sequence has assigned secondary structure then colored lines will appear under the sequence in the ICM Workspace. Regions underlined in red = alpha helix, green = beta sheet, blue = pi helix, magenta = 3/10 helix.

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