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Contents
 
Introduction
Help Videos
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Sequences & Alignments
Protein Modeling
Cheminformatics
Learn and Predict
Docking
Virtual Screening
Molecular Dynamics
Run MD
MolScreen
3D Ligand Editor
Tables and Plots
Local Databases
ICM-Scarab
KNIME
Tutorials
 Graphics Tutorials
 3D Documents
 Protein Structure Tutorials
 Sequence and Alignment Tutorials
 Homology Modeling Tutorials
 Cheminformatics Tutorials
 3D Ligand Editor Tutorial
 APF Tutorial
 Ligand Docking Tutorials
 Protein-Protein Docking
 Virtual Ligand Screening Tutorials
 Induced Fit (Flexibility) Docking Tutorials
 2D QSAR Model
 3D QSAR Tutorial
FAQs
 
Index
PrevICM User's Guide
22 Tutorials
Next

Graphics Tutorials
Molecule Representation, Coloring, Labeling and Annotation HTML
Creating Fully Interactive Slides for PowerPoint and the Web HTML Reference Guide | Webinar
Sequence and Alignment Tutorials
Read Sequences and Align HTML Video
Link Sequence to Structure HTML Video
Alignment Annotation HTML
Protein Structure Tutorials
PDB Search HTML
Convert PDB to ICM Object HTML
Superimpose Proteins HTML
Structure Analysis HTML
Calculate contacts HTML
Display hydrogen bonds HTML
Identify ligand binding pockets HTML
PDB Preparation: Symmetry HTML
PDB Preparation: Occupancy & B-Factors HTML
PDB Preparation: Alternative Orientation HTML
PDB Preparation: Biomolecule HTML
Protein Modeling Tutorials
Building an Homology Model HTML
GPCR Modeling Example HTML
Loop Modeling HTML
Predicting the Effect of a Mutation on Binding HTML
Predicting the Effect of a Mutation on Stability HTML
Cheminformatics Tutorials
Chemical Sketching using the Molecular Editor HTML Reference Guide
Chemical Search HTML, Refrence Guide
Chemical Clustering HTML,
Working with Large Chemical Space HTML,
3D Pharmacophore Search HTML Video
2D Pharmacophore Search HTML Video
How to Create a Markush Structure HTML Video
How to Enumerate a Markush Library HTML Video
How to Decompose a library based on a Markush Library HTML Video
How to Enumerate a library by reaction HTML Video
Detecting Activity Cliffs HTML
Atomic Property Fields (APF)
APF Superposition, Score, Consensus, Screening and Clustering. HTML
Ligand Editor Tutorials
Working with the ICM Interactive 3D Ligand Editor HTML Reference Guide.
Ligand Docking Tutorials
Dock Biotin to the Streptavidin Receptor HTML Video
Re-Dock an Inhibitor to Ricin Crystal Structure HTML Video
Covalent Docking HTML Video
Protein-Protein Docking Tutorial
Protein-Protein Docking using FFT Method HTML
Virtual Screening Tutorials
Virtual Ligand Screening to Ricin Receptor HTML
Virtual Ligand Screening to Cyclooxygenase HTML Video-1 | Video-2
Docking a Markush Library HTML
Induced Fit Docking Tutorials
Multiple Receptor Conformation Ensemble Docking Example HTML
Explicit Group Docking HTML
QSAR Tutorials
2D FingerPrint QSAR Model HTML
2D 3D Pharmacophore QSAR Model HTML


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