ICM Manual v.3.9
by Ruben Abagyan,Eugene Raush and Max Totrov Copyright © 2020, Molsoft LLC Nov 14 2024
|
Index
&, 2.14.3 | Box, 2.34.21 |
2D chemicals, 2.23.9.16 | Bracket, 2.34.22 |
labels, 2.33.58.1 | C, 5.3 |
to 3D, 3.17 | CCP4, 5.6.6 |
trees, 2.33.65.38 | CGI, 2.11 |
smooth, 2.34.146.2 | COLOR.bg, 2.19.9 |
3D chemical builder, 1.4.2.8 | distanceAtom, 2.19.10 |
font size, 2.33.23.12 | label, 2.19.11 |
label, 2.33.23.12, 2.33.89.39 | CONSENSUS, 2.23.1 |
labels, 2.33.58.1 | CONSENSUSCOLOR, 2.23.2 |
mol file, 2.36.86 | CONSENSUS_strength, 2.19.12 |
plots intro, 1.4.3.7 | Cad, 2.34.23, 2.34.23.1, 2.34.23.2 |
smoothing, 2.34.146.3 | Cad1, 2.34.23.1 |
superposition, 2.36.22 | Cadalign, 2.34.23.2 |
transformations, 2.33.102.2 | Ceil, 2.34.24 |
tree, 2.33.65.38 | Cell, 2.34.25 |
chemical similarity, 2.34.136 | Charge, 2.34.26 |
pharmacophore comparison, 2.34.136.3 | Chemical, 2.34.27 |
3dxml, 5.5.3 | Functions, 2.27 |
=, 2.14.1 | Synthetic Accessibility, 2.30 |
A, 5.1 | Cluster, 2.34.28 |
ANN, 2.33.53 | Collada, 5.5.3 |
APF distance, 2.34.136 | Collection, 2.34.28.1 |
Abs, 2.34.1 | Color, 2.34.29 |
Acc, 2.34.2 | from gradient, 2.34.29.1 |
Acos, 2.34.3 | image, 2.34.29.2 |
Acosh, 2.34.4 | protein, 2.34.29.3 |
Adobe, 2.21.23 | Compare, 2.34.30 |
Align, 2.34.5 | Connolly surface, 5.8.7 |
sequence, 2.34.5.1 | Consensus, 2.34.31 |
AlignSS, 2.35.1 | Contour, 2.34.32 |
Angle, 2.34.6 | Corr, 2.34.33 |
Apple, 3.14.6.2 | Cos, 2.34.34 |
Area, 2.34.7 | Cosh, 2.34.35 |
residue contacts, 2.34.7.1 | Count, 2.34.36 |
Asin, 2.34.8 | CubicRoot, 2.34.37 |
Asinh, 2.34.9 | D, 5.4 |
Ask, 2.34.10 | DAE, 5.5.3 |
Askg, 2.34.11 | DE, 2.33.35.2 |
Atan, 2.34.12 | DNA Representation, 1.4.1.3 |
Atan2, 2.34.13 | alignment, 2.33.3.4 |
Atanh, 2.34.14 | melting temperature, 2.34.164 |
Atom, 2.34.15 | to RNA conversion, 2.34.138.1 |
Augment, 2.34.16 | views, 1.4.1.3 |
Axis, 2.34.17 | Date, 2.34.38 |
B, 5.2 | Deletion, 2.34.39 |
BPMC, 5.2.6 | Descriptor, 2.34.40, 2.34.41 |
Bfactor, 2.34.19 | numeric, 2.34.40 |
Blob, 2.34.18 | Det, 2.34.42 |
Boltzmann, 2.34.20 | Disgeo, 2.34.43 |
2 alignments, 2.34.44.13 | pattern, 2.34.56.3 |
matrices, 2.34.44.9 | in array, 2.34.56.1 |
Dayhoff, 2.34.44.11 | table, 2.34.56.2 |
Tanimoto, 2.34.44.7 | FlexLM license info, 2.34.188 |
alignment, 2.34.44.12 | Floor, 2.34.57 |
as_, 2.34.44.3 | Formula, 2.34.58 |
rarray, 2.34.44.4 | GCNN, 3.13.1.24 |
atoms, 2.34.44.3 | GINGER, 3.13.1.20 |
chemical, 2.34.44.7, 2.34.44.15 | GPU, 3.13.1.20, 3.18 |
chemset, 2.34.44.8 | GRAPHICS, 2.23.5 |
dayhoff, 2.34.44.11 | alignmentRainbow, 2.23.5.1 |
hierarchical, 2.34.44.6 | atomLabelShift, 2.23.5.2 |
iarray, 2.34.44.1 | atomValueCircles, 2.23.5.3 |
alignment, 2.34.44.12 | ballRadius, 2.23.5.4, 2.23.5.31 |
matrix, 2.34.44.5, 2.34.44.9 | ballStickRatio, 2.23.5.5 |
multiple atomic, 2.34.44.4 | chainBreakLabelDisplay, 2.23.5.8 |
rarray, 2.34.44.2 | chainBreakStyle, 2.23.5.7 |
tether, 2.34.44.10 | clashWidth, 2.23.5.6 |
tree, 2.34.44.14 | clipStatic, 2.23.5.10 |
cluster, 2.34.44.14 | clippingPlane, 2.23.5.9 |
Docking, 3.18 | cpkClipCaps, 2.23.5.11 |
H, 5.5 | displayLineLabels, 2.23.5.12 |
Ligase protacModel.icm, 3.16 | displayMapBox, 2.23.5.13 |
number, 2.34.44.6 | dnaBallRadius, 2.23.5.14 |
EDS server, 2.36.42 | dnaRibbonRatio, 2.23.5.15 |
EST-alignment, 2.33.3.4 | dnaRibbonStyle, 2.23.5.16 |
Eigen, 2.34.45 | dnaRibbonWidth, 2.23.5.17 |
Enamine, 3.13.1.23 | dnaRibbonWorm, 2.23.5.18 |
Energy, 2.34.46 | dnaStickRadius, 2.23.5.19 |
Entropy, 2.34.47 | formalChargeDisplay, 2.23.5.20 |
Error, 2.34.48 | grobDotSize, 2.23.5.21 |
soap, 2.34.49 | grobLineWidth, 2.23.5.22 |
Exist, 2.34.50 | hbondAngleSharpness, 2.23.5.26 |
molcart, 2.34.50.1 | hbondBallPeriod, 2.23.5.27 |
Existenv, 2.34.51 | hbondBallStyle, 2.23.5.28 |
Exp, 2.34.53 | hbondMinStrength, 2.23.5.25 |
Extension, 2.34.52 | hbondRebuild, 2.23.5.24 |
FILTER, 2.23.3 | hbondStyle, 2.23.5.23 |
Z, 2.23.3.1 | hbondWidth, 2.23.5.29 |
gz, 2.23.3.2 | hetatmZoom, 2.23.5.31 |
uue, 2.23.3.3 | hydrogenDisplay, 2.23.5.32 |
FTP, 2.23.4 | light, 2.23.5.33 |
createFile, 2.23.4.1 | lightPosition, 2.23.5.34 |
keepFile, 2.23.4.2 | mapLineWidth, 2.23.5.35 |
proxy, 2.23.4.3 | occupancyDisplay, 2.23.5.36 |
Field, 2.34.54, 2.34.54.1 | occupancyRadiusRatio, 2.23.5.37 |
user, 2.34.54.1 | quality, 2.23.5.38, 2.34.91.1 |
File, 2.34.55 | rainbowBarStyle, 2.23.5.39 |
Find, 2.34.56 | resLabelDrag, 2.23.5.40 |
chemical, 2.34.56.3 | resLabelYShift, 2.23.5.41 |
ribbonGapDistance, 2.23.5.43 | Hartree-Fock, 2.33.84.21, 2.33.110.17 |
ribbonRatio, 2.23.5.44 | Header, 2.34.64 |
ribbonWidth, 2.23.5.45 | Histogram, 2.34.65 |
ribbonWorm, 2.23.5.46 | N, 5.6 |
rocking, 2.23.5.47 | ICM desktop, 2.23.8.6 |
rockingRange, 2.23.5.48 | documents, 2.33.84.4 |
rockingSpeed, 2.23.5.49 | modules, 1.4.4 |
selectionLevel, 2.23.5.50 | object, 2.36.13 |
selectionStyle, 2.23.5.51 | residue library, 2.21.24 |
sketchAccents, 2.23.5.30 | ICM-shell, 3.1, 5.8.5 |
stereoMode, 2.23.5.52 | intro, 1.7.1 |
stickRadius, 2.23.5.31, 2.23.5.53 | script, 2.33.8 |
surfaceDotDensity, 2.23.5.55 | ICMFF force field, 2.36.79 |
surfaceDotSize, 2.23.5.54 | ICMHOME, 3.1.2.1 |
surfaceProbeRadius, 2.23.5.56 | shell variable, 3.1.2.1 |
transparency, 2.23.5.57 | IMAGE, 2.23.9 |
wormRadius, 2.23.5.58 | bondLength2D, 2.23.9.15 |
GRID, 2.23.6 | color, 2.23.9.8 |
gcghExteriorPenalty, 2.23.6.1 | compress, 2.23.9.9 |
gpGaussianRadius, 2.23.6.6 | font, 2.23.9.16 |
margin, 2.23.6.2 | gammaCorrection, 2.23.9.7 |
maxEl, 2.23.6.3 | generateAlpha, 2.23.9.10 |
maxVw, 2.23.6.5 | lineWidth, 2.23.9.3 |
minEl, 2.23.6.4 | lineWidth2D, 2.23.9.14 |
GROB, 2.23.7 | orientation, 2.23.9.17 |
arrowRadius, 2.23.7.3 | paperSize, 2.23.9.18 |
atomSphereRadius, 2.23.7.1 | previewResolution, 2.23.9.13 |
contourSigmaIncrement, 2.23.7.5 | previewer, 2.23.9.12 |
relArrowHead, 2.23.7.4 | printerDPI, 2.23.9.2 |
relArrowSize, 2.23.7.2 | quality, 2.23.9.1 |
GUI, 2.23.8 | rgb2bw, 2.23.9.19 |
defaults, 3.14.6.2 | scale, 2.23.9.4 |
dialog, 2.32 | stereoAngle, 2.23.9.6 |
plot, 2.33.65.32 | stereoBase, 2.23.9.5 |
preferences, 2.33.85.4 | stereoText, 2.23.9.11 |
tableRowMarkColors, 2.23.8.5 | writeScale, 2.23.9.20 |
windowLayout, 2.23.8.6 | I_out, 2.24.4 |
workspaceFolderStyle, 2.23.8.9 | Iarray, 2.34.66, 2.34.66.4, 2.34.66.5 |
workspaceStyle, 2.23.8.7 | atom numbers, 2.34.66.4 |
workspaceTabStyle, 2.23.8.8 | bits to integers, 2.34.66.3 |
GaussFit, 2.34.82 | inverse, 2.34.66.2 |
Getarg, 2.34.59 | residue numbers, 2.34.66.5 |
Getenv, 2.34.60 | reverse, 2.34.66.2 |
GigaScreen, 3.13.1.24 | stack, 2.34.66.6 |
Gradient, 2.34.61 | Icm Options, 2.1 |
Graphics, 1.4.1 | IcmSequence, 2.34.67 |
Grob, 2.34.62 | Image, 2.34.68 |
Group, 2.34.63 | collection, 3.9.2.1 |
HTTP.ignoreProxyDomains, 2.23.4.5 | frame by frame, 3.9.2.2 |
proxy, 2.23.4.4 | InChI, 2.34.69 |
InList, 2.34.105 | residue areas, 2.34.90.8 |
Index, 2.34.70 | comparison, 2.34.90.5 |
chemical, 2.34.70.2 | stack, 2.34.90.11 |
compare, 2.34.70.10 | sub, 2.34.90.2 |
element in array, 2.34.70.8 | symmetric, 2.34.90.3 |
fork, 2.34.70.1 | table, 2.34.90.6 |
regexp, 2.34.70.4 | tensor, 2.34.90.7 |
string, 2.34.70.3 | Max, 2.34.91 |
table label, 2.34.70.6 | image graphic, 2.34.91.1 |
selection, 2.34.70.5 | MaxHKL, 2.34.92 |
tree, 2.34.70.9 | Mean, 2.34.94 |
unique elements, 2.34.70.7 | Median, 2.34.93 |
Indexx, 2.34.71 | Method, 2.22.13 |
Info, 2.34.73 | Min, 2.34.95 |
image, 2.34.74 | Mod, 2.34.97 |
model, 2.34.75 | Mol, 2.34.98 |
Insertion, 2.34.72 | MolLogP, 2.28 |
Integer, 2.34.76 | MolLogS, 2.29 |
Integral, 2.34.77 | MolPSA, 5.7.12 |
Interrupt, 2.34.78 | MolSynth, 2.30 |
Introduction, 1 | Moment, 2.34.88 |
JSON, 2.33.84.57 | of Inertia, 2.34.88 |
LIBRARY, 2.23.10 | Money, 2.34.96 |
men, 2.23.10.1 | N-terminus, 2.23.14.4 |
res, 2.23.10.2 | NMR, 2.33.63.1 |
Label, 2.34.79 | NOE averaging, 2.22.6 |
Laplacian, 2.34.80 | Name, 2.34.99 |
Latent, 2.34.187.3 | chemical, 2.34.99.6 |
LatentVector, 2.34.187.3 | property, 2.34.99.1 |
Length, 2.34.81 | close sequence, 2.34.99.3 |
LinearFit, 2.34.83 | conf, 2.34.99.7 |
LinearModel, 2.34.84 | image, 2.34.99.11 |
Log, 2.34.85 | molcart, 2.34.99.12 |
LogP, 2.28, 2.34.114 | object parray, 2.34.99.10 |
LogS, 2.29, 2.34.114 | sequence, 2.34.99.8 |
MD, 3.20 | soap, 2.34.99.2 |
M_out, 2.24.5 | string, 2.34.99.4 |
Mac, 3.14.6.2 | tree, 2.34.99.5 |
Map, 2.34.86 | Namex, 2.34.100 |
Markush structures, 2.33.55 | image, 2.34.100.2 |
Mass, 2.34.87 | sequence, 2.34.100.1 |
Match, 2.34.89 | Newick tree format, 2.34.156.4 |
Mathews, 2.34.136.4 | Next, 2.34.101, 2.34.101.1 |
Matrix, 2.34.90 | covalent neighbors, 2.34.101.1 |
alignment, 2.34.90.9 | Nof, 2.34.102 |
boundary, 2.34.90.10 | chemical, 2.34.102.2 |
color, 2.34.90.4 | distance, 2.34.102.3 |
grob connectivity, 2.34.90.13 | latent, 2.34.102.6 |
histogram, 2.34.90.12 | library, 2.34.102.4 |
new, 2.34.90.1 | molcart, 2.34.102.5 |
tree, 2.34.102.1 | file, 2.33.55 |
Norm, 2.34.103 | RIDE, 3.19 |
Normalize, 2.34.104 | RIDGE, 3.13.1.21, 3.13.1.24, 3.18 |
NotInList, 2.34.105 | RNA topology, 2.23.5.16 |
R, 5.7 | RTCNN, 3.13.1.24 |
OBJECT, 2.23.11 | R_2out, 2.24.7 |
Obj, 2.34.106 | R_out, 2.24.6 |
Occupancy, 2.34.107 | Radius, 2.34.120 |
PBS, 3.13.1.15, 3.13.1.19 | Random, 2.34.121 |
PCA, 3.3.9 | string, 2.34.121.1 |
PLOT, 2.23.12 | Rarray, 2.34.122 |
Yratio, 2.23.12.9 | reverse, 2.34.122.2 |
box, 2.23.12.1 | sequence projection, 2.34.122.1 |
color, 2.23.12.2 | alignment projection, 2.34.122.3 |
font, 2.23.12.3 | strength, 2.34.122.5 |
fontSize, 2.23.12.4 | property assignment, 2.34.122.4 |
gridLineWidth, 2.23.12.5 | RarrayAlignment, 2.34.122.5 |
labelFont, 2.23.12.13 | Rarrayinverse, 2.34.122.2 |
lineWidth, 2.23.12.6 | Real, 2.34.123 |
logo, 2.23.12.10 | Reference, 2.34.125 |
markSize, 2.23.12.7 | Guide, 2 |
numberOffset, 2.23.12.8 | Remainder, 2.34.124 |
orientation, 2.23.12.11 | Replace, 2.34.126 |
rainbowStyle, 2.23.12.14 | chemical, 2.34.126.4 |
seriesLabels, 2.23.12.12 | exact, 2.34.126.1 |
PLS, 2.34.102.6 | regexp, 2.34.126.3 |
error, 2.34.136.4 | simple, 2.34.126.2 |
models, 2.34.136.4 | Res, 2.34.127, 2.34.128 |
PROTAC, 3.16 | Resali, 2.34.128 |
Parray, 2.34.109 | Resolution, 2.34.129 |
Parray-object, 2.34.109 | Rfactor, 2.34.131 |
Path, 2.34.108 | Rfree, 2.34.132 |
Pattern, 2.34.110 | Ride, 3.19 |
Pi, 2.34.111 | Ring, 2.34.130 |
Polar Surface Area, 5.7.12 | Rmsd, 2.34.133 |
Potential, 2.34.112 | of subset, 2.23.14 |
Power, 2.34.113 | Rot, 2.34.134 |
Predict, 2.34.114 | S, 5.8 |
Probability, 2.34.115 | SAR analysis, 2.33.65.27, 2.33.65.28, 2.33.92.2, 2.33.92.3 |
Profile, 2.34.116 | SC, 2.33.35.2 |
Property, 2.34.117 | SEQUENCE.restoreOrigNames, 2.23.12.15 |
Protac, 3.16 | SGE, 3.13.1.19 |
Protonation state, 2.34.160.11 | SITE, 2.23.13 |
Putarg, 2.34.118 | defSelect, 2.23.13.2 |
Putenv, 2.34.119 | labelOffset, 2.23.13.3 |
QSAR, 2.33.53 | labelStyle, 2.23.13.4 |
R-groups, 2.33.55 | labelWrap, 2.23.13.5 |
REAL, 3.13.1.23 | showSeqSkip, 2.23.13.6 |
REBEL, 3.7.2 | wrapComment, 2.23.13.7 |
faq, 3.7.2 | SLN notation, 2.34.156.10 |
SMARTS, 2.26, 2.33.10, 2.34.102.2 | SoapMessage, 2.34.152 |
SOAP, 2.34.99.2, 2.34.102.7, 2.34.182.1 | SolveQuadratic, 2.34.147 |
request message, 2.34.152 | SolveQubic, 2.34.148 |
SSSR, 2.34.130 | Sort, 2.34.153 |
S_out, 2.24.8 | Sphere, 2.23.14.3, 2.34.151 |
S_proteinTags, 2.24.9 | Split, 2.34.154 |
Sarray, 2.34.135 | chemical, 2.34.154.4 |
index, 2.34.135.1 | multisep, 2.34.154.3 |
Score, 2.34.136 | regexp, 2.34.154.2 |
alignment, 2.34.136.8 | tree, 2.34.154.1 |
apf, 2.34.136.3 | Sql, 2.34.149 |
chemset, 2.34.136.2 | Sqrt, 2.34.150 |
conservation, 2.34.136.7 | Srmsd, 2.34.155 |
model, 2.34.136.4 | Sstructure, 2.34.157 |
overlap, 2.34.136.1 | String, 2.34.156, 2.34.156.8 |
predictions, 2.34.136.5 | alternative, 2.34.156.7 |
sequence, 2.34.136.6 | date, 2.34.156.2 |
Scripting Tutorials, 1.8 | mol, 2.34.156.3 |
Select, 2.34.137 | selection, 2.34.156.8 |
break, 2.34.137.1 | slide gui, 2.34.156.9 |
alignment, 2.34.137.14 | substring, 2.34.156.1 |
atom property, 2.34.137.7 | chemical formula, 2.34.156.10 |
nmembers, 2.34.137.4 | Sum, 2.34.158 |
string, 2.34.137.9 | chemical, 2.34.158.1 |
expand, 2.34.137.6 | image, 2.34.158.2 |
fix, 2.34.137.2 | Swissprot, 2.33.110.24 |
graphical, 2.34.137.5 | Symgroup, 2.34.159 |
neighbors, 2.34.137.3 | T, 5.9 |
Select_by atom numbers, 2.34.137.10 | TOOLS, 2.23.14 |
Select_by_sequence, 2.34.137.13 | edsDir, 2.23.14.1 |
Select_by_text, 2.34.137.9 | membrane, 2.23.14.2 |
Select_lists, 2.34.137.12 | minSphereCubeSize, 2.23.14.3 |
Select_patching, 2.34.137.11 | pdbChargeNterm, 2.23.14.4 |
Select_projection, 2.34.137.8 | pdbReadNmrModels, 2.23.14.5 |
Sequence, 2.34.138 | rebelPatchSize, 2.18.5, 2.23.14.6 |
array, 2.34.138.3 | smilesXyzSeparator, 2.23.14.7 |
Sequence(dna_or_rna nucleotide), 2.34.138.1 | superimposeMaxDeviation, 2.23.14.10 |
reverse), 2.34.138.2 | superimposeMaxIterations, 2.23.14.8 |
Shannon, 2.34.47 | superimposeMinAtomFraction, 2.23.14.9 |
Shuffle, 2.34.139 | tsShape, 2.23.14.12 |
Sign, 2.34.140 | tsWeight, 2.23.14.13 |
Simulations, 1.4.2 | writePdbRenameRes, 2.23.14.14 |
Sin, 2.34.141 | Table, 2.34.160 |
Sinh, 2.34.142 | alignment numbers, 2.34.160.3 |
Site, 2.34.143 | distance, 2.34.160.10 |
Slide, 2.34.144 | matrix, 2.34.160.4 |
Smiles, 2.34.145 | model, 2.34.160.8 |
Smooth, 2.18.24, 2.34.146, 2.34.146.1, 2.34.146.3 | chem, 2.34.160.9 |
matrix, 2.34.146.2 | pairs, 2.34.160.5 |
Smoothrs, 2.34.146.3 | plot, 2.34.160.7 |
url_decoder, 2.34.160.1 | Warning, 2.34.191 |
Table(alignment), 2.34.160.2 | Wavefront format, 2.33.84.22 |
Table(stack), 2.34.160.6 | XML, 2.12 |
Tan, 2.34.161 | Xyz, 2.34.192 |
Tanh, 2.34.162 | axes, 2.34.192.8 |
Tanimoto, 2.34.66.3 | chemical match, 2.34.192.6 |
distance, 2.33.65.37 | fract, 2.34.192.4 |
matrix, 2.34.44.7 | mesh, 2.34.192.3 |
Temperature, 2.34.164 | points, 2.34.192.1 |
Tensor, 2.34.163 | rings, 2.34.192.2 |
Time, 2.34.165 | transformed xyz, 2.34.192.5 |
Tointeger, 2.34.166 | vector2matrix, 2.34.192.7 |
Tolower, 2.34.167 | Z-shift, 2.19.35 |
Toreal, 2.34.168 | ZEGA, 5.10.9 |
Torsion, 2.34.169 | intro, 1.4.3.6 |
Tostring, 2.34.170 | _NAME, 2.33.89.47 |
Toupper, 2.34.171 | _chemBatch, 3.1.2.5 |
ToxScore, 2.35.2 | _chemSuper, 3.15 |
Tr123, 2.34.172 | _confGen, 3.17 |
Tr321, 2.34.173 | _dockBatch, 3.13.1.7 |
Trace, 2.34.174 | _dockScan, 3.13.1.18 |
Trans, 2.34.175 | _macro, 2.37.1 |
Transform, 2.34.176 | file, 2.37.1 |
Transpose, 2.34.177 | _startup, 3.1.2.3 |
Trim, 2.34.178 | file, 2.37.2 |
chemical, 2.34.179 | icm, 2.37.2 |
sequence, 2.34.180 | a_, 2.8.1 |
Turn, 2.34.181 | abbr, 1.6 |
Type, 2.34.182 | abbreviations, 1.6 |
molcart, 2.34.182.2 | absolute to cell x y z, 2.34.192.4 |
soap, 2.34.182.1 | accFunction, 2.24.2 |
Z, 5.10 | acceptor, 3.6.1 |
Unique, 2.34.183 | access large sdf file, 2.33.84.24 |
Unix, 2.34.184 | accessMethod, 2.22.2 |
Uppsala, 2.36.42 | accessible residues, 3.3.6 |
server, 2.36.43 | surface, 2.33.65.14, 5.8.15 |
SYNTHES, 3.13.1.23 | accessing sections, 2.33.110.24 |
VLS, 3.18 | accuracy, 2.34.136.4 |
V_, 2.8.1 | acidity constant, 2.33.89.11, 2.33.89.12 |
Value, 2.34.185 | activate fog, 2.33.23.24 |
soap, 2.34.186 | alignment, 2.33.89.40 |
Vector, 2.34.16, 2.34.187, 2.34.187.1, 2.34.187.3 | document, 2.33.89.40 |
symmetry transformation, 2.34.187.2 | tab, 2.33.89.40 |
Vectorproduct, 2.34.187.1 | table, 5.9.2.4 |
Vectorsymmetrytransformation, 2.34.187.2 | add, 2.33.1 |
Version, 2.34.188 | column, 2.33.1.1 |
View, 2.34.190 | function, 2.33.1.1.1 |
Volume, 2.34.189 | matrix, 2.33.1.2 |
WEBAUTOLINK, 2.23.16 | slide, 2.33.1.3 |
WEBLINK, 2.23.15 | table, 2.33.1.4 |
addBfactor, 2.19.1 | to sequence transfer, 2.34.122.1 |
adding atoms to non-ICM objects, 2.33.7.1 | text conversion, 2.34.156.4 |
columns to table, 2.33.1.1 | weighted, 2.34.5 |
hydrogens, 2.36.13 | gapExtension, 2.19.18 |
in place, 2.14.4 | gapOpen, 2.19.19 |
to slideshow, 2.33.1.3 | alignment_as_text, 2.34.156.4 |
admet selection, 3.13.1.13 | aliphatic amines, 2.33.70.2 |
advanced chemical search, 3.6 | all, 5.1.2 |
operations, 2.14.6 | torsions table, 3.3.11 |
ops, 2.14.6 | alpha, 2.23.5.57, 2.33.89.42, 5.1.3 |
ahfs, 2.34.44.6 | channel, 2.23.9.10 |
ali_seq_project, 2.34.156.5 | alternative flag, 2.33.89.18 |
alias, 2.33.2 | amber, 5.1.4 |
align, 2.33.3 | amino acid, 2.21.24, 2.34.172, 2.34.173 |
3D, 2.33.3.5 | colors, 2.34.29.3 |
faq, 3.3.2 | labels, 2.33.3.2 |
heavy, 2.33.3.6 | and, 2.14.3 |
how to, 3.3.2 | angle rotation, 2.36.84 |
chemical, 2.33.88.1 | angles, 2.34.102.3 |
fragments, 2.33.3.4 | angular hbond dependence, 2.23.5.26 |
intro, 1.4.3.3 | animated story, 5.8.14 |
number, 2.33.3.2 | animation, 2.33.23.5, 2.33.23.6, 3.9 |
chemical, 2.33.3.1 | annotation, 2.33.22.26, 2.33.89.26, 2.33.89.27 |
res numbers, 2.33.3.2 | apf, 3.15, 3.19 |
sequence, 2.33.3.3 | append, 5.1.5 |
sequences, 2.33.3.3 | a tables, 2.33.1.4 |
alignMethod, 2.22.3 | column, 2.33.4.3 |
alignMinCoverage, 2.19.2 | command, 2.33.4 |
alignMinMethod, 2.19.2 | sequence, 2.33.4.1 |
alignOldStatWeight, 2.19.3 | to group, 2.33.4.1 |
alignTwoSequences, 2.36.1 | stack, 2.33.4.2 |
aligned residues, 2.34.128 | tables, 2.33.50 |
alignment, 2.33.22.26, 2.33.89.27, 2.33.89.35, 2.33.89.55, 5.1.1 | by shared column, 2.33.4.3 |
as table, 2.34.160.2 | appending, 2.33.1.1 |
block length, 2.18.22 | an element, 2.14.4 |
secondary structure, 2.35.1 | menu items, 2.23.10.1 |
cleaning, 2.34.146.4 | representations to a slide, 2.33.23.21 |
color by property, 2.33.89.34 | rows to matrix, 2.33.1.2 |
coloring, 2.21.1 | area under curve, 2.36.21 |
conservation, 2.36.8 | arguments, 2.33.64 |
distance, 2.34.137.13 | arithmetic operations, 2.14.2 |
editor, 2.4 | arithmetics, 2.14 |
extraction, 2.34.5 | aromatic planes, 2.36.4 |
gap format, 5.1.1.1 | array, 2.33.72.4, 5.1.6, 5.7.3.1 |
intro, 1.4.3.4 | assignment, 2.14.1 |
projection, 2.34.156, 2.34.156.5, 2.34.156.6 | derivative, 2.34.146.1 |
score, 2.34.136.7 | overlap, 2.34.136.1 |
sequence reordering, 2.34.5 | parray, 2.33.22.31 |
strength, 2.34.122.5 | size, 2.34.102 |
structural, 2.33.3.5, 2.34.5 | subset, 2.6 |
length, 2.33.89.26 | batch chemical processing, 3.1.2.5 |
as2_out, 2.24.14 | docking, 3.13.1.18 |
as_, 2.8.8 | beta, 5.2.3 |
as_graph, 2.23.5.50, 2.23.5.51, 2.34.137.5 | bfactor circles, 2.23.5.3 |
as_out, 2.24.13 | biased probability monte carlo, 2.33.71 |
assign, 2.33.5 | binary file table of contents, 2.33.84.2 |
residue, 2.33.6.1 | files, 2.33.110.2 |
ring conformation to template, 2.33.66.4 | string, 5.2.4 |
sstructure, 2.33.5.1 | key, 2.33.89.43 |
segment, 2.18.20, 2.33.5.2 | binding energy, 3.7.4 |
assignment, 2.14.1 | pocket finding, 3.4.2 |
atc code, 2.34.44.6 | pockets, 2.33.92.1 |
atom, 2.33.13.1, 5.1.7 | side comparison, 2.36.8 |
centers within, 2.34.151 | site analysis, 3.4.2 |
code file, 2.37.4 | biological symmetry, 2.33.89.9 |
coordinates, 2.34.192.1 | vector, 2.34.66.3 |
flickering, 2.33.89.3 | to integers compression, 2.34.66.3 |
label font, 2.37.15 | blast, 2.33.110.25 |
labels, 2.33.89.2 | files, 2.33.110.25 |
name, 2.33.3.1, 2.34.79 | blast-formatted database, 2.33.35.3, 2.33.110.25 |
pairs, 2.33.89.68, 2.33.89.69, 2.34.160.10 | blending, 2.33.110.31 |
proximity to surface, 2.33.90.9 | images, 2.34.158.2 |
selection by number, 2.34.66.4 | blob, 5.2.4 |
type, 2.34.182 | bold, 2.33.89.38.1 |
user field, 2.34.54.1 | bond angle bending, 2.37.5 |
atomLabelStyle, 2.22.4 | errors, 2.33.90.12 |
atomSingleStyle, 2.22.5 | stretching, 2.37.6 |
atomic contributions, 2.33.90.20, 2.33.90.21 | to protein, 2.33.72.3 |
coordinate transfer, 2.33.89.3 | width, 2.23.9.14 |
property fieds, 3.19 | bonded atoms, 2.34.101.1 |
fields, 3.15 | born radii, 2.33.90.9 |
solvation contributions, 2.34.7 | boundary element, 5.2.5 |
in residue, 2.34.63 | matrix, 2.34.90.10 |
alternative position, 2.33.89.18 | box, 2.34.21 |
selecting, 2.8.8 | break, 2.33.6 |
translate, 2.33.89.3 | brightness, 2.23.5.33 |
attenuation by occupancy, 2.33.65.25 | build, 2.33.7 |
auc enrichment, 2.36.21 | atom, 2.33.7.1 |
auto saving log, 2.22.11 | column, 2.33.7.2 |
autoSavePeriod, 2.18.1 | conf, 2.33.7.3 |
automated setup, 3.13.1.7 | faq, 3.8.1 |
avi, 2.33.110.31 | from string, 2.33.7.9 |
axis, 5.1.8 | helix, 3.10.5 |
axisLength, 2.19.4 | how to, 3.8.1 |
background, 2.34.29.2 | hydrogen, 2.33.7.10 |
color, 2.19.9 | loop, 2.33.7.7 |
ball, 2.33.89.2, 5.2.2 | model, 2.33.7.6, 2.33.110.9 |
base, 5.2.1 | molcart, 2.33.7.11 |
pair diagram, 2.23.5.16 | sequence, 2.33.7.4 |
basis set, 2.33.84.21, 2.33.110.17 | smiles, 2.33.7.8 |
tautomer, 2.33.7.5 | chem formula, 2.34.156.10 |
built-in functions, 5.5.5 | chemSuper3D, 2.36.22 |
plot, 2.33.89.53 | chemical, 2.23.14.7, 2.25, 2.33.35.9, 2.34.69 |
atoms, 2.33.14 | 2D drawings, 2.33.65.9 |
contact surface, 2.33.14 | SMARTS search, 2.33.35.5 |
molecule, 2.33.13.1 | atom annotation, 2.33.22.20 |
number of bonds, 2.34.137.3 | database, 3.5 |
variables, 2.33.14 | decomposition, 2.33.65.27, 2.33.92.2, 2.33.92.3 |
cage, 2.36.4 | descriptors, 2.34.41, 5.7.12 |
calcArea, 2.36.2 | distance, 2.34.44.8, 2.34.136.2, 2.34.136.3 |
calcBindingEnergy, 2.36.3 | diversity, 3.14.6.4 |
calcDihedralAngle, 2.36.4 | drawing, 2.23.9.14, 2.23.9.16 |
calcEnergyStrain, 2.36.20 | quality, 2.23.9.15 |
calcEnsembleAver, 2.36.5 | fingerprints, 2.9 |
calcMaps, 2.36.6 | formula, 2.34.156.10 |
calcPairSeqIdsFromAli, 2.36.7 | fragment counting, 2.34.102.2 |
calcPepHelicity, 2.36.9 | functions, 2.27 |
calcProtUnfoldingEnergy, 2.36.10 | keys, 2.33.65.21 |
calcRmsd, 2.36.11 | match coordinates, 2.34.192.6 |
calcRoc, 2.36.21 | matching, 2.33.35.4, 2.33.84.49, 2.33.84.50, 2.34.133, 2.34.155 |
calcSeqContent, 2.36.12 | models, 2.34.99.1 |
calcSeqSimilarity, 2.36.8 | modification, 2.33.68, 2.33.70, 2.36.37 |
calculate phases, 3.11.2 | name, 2.34.99.6 |
call, 2.33.8 | normalization, 2.33.70 |
canonical form, 2.34.45 | rules, 2.33.70.4 |
carboxylic acid, 2.33.70.2 | pattern, 2.26, 2.33.88.1 |
cartesian cooridnates, 2.34.192 | search, 2.34.56.3 |
cartridge, 3.5 | reaction product generation, 2.33.65.33 |
cavities, 2.33.92.1 | search, 2.33.35.10, 2.33.88.1, 2.34.102.2 |
cavity, 5.3.1 | similarity, 3.5 |
analysis, 3.3.13 | simplification, 2.34.178 |
ccp4 maps, 2.33.84.27 | spreadsheet, 2.33.12, 2.33.84.48, 2.33.84.49, 2.33.84.50, 2.33.89.47, 2.33.110.11 |
cd, 2.33.89.21 | structure, 2.33.110.22 |
cell axis vectors, 2.34.192.8 | from smiles, 2.33.89.7 |
specific icm commands, 5.9.2.4 | substructure, 2.33.35.4 |
center, 2.13.1, 2.33.9 | mask, 2.33.65.21 |
cgi programming with icm, 2.11 | superposition, 2.22.7, 2.34.133, 3.15 |
chain breaks, 2.23.5.7, 2.23.5.8, 2.34.137.1 | table, 2.25 |
symbol, 2.33.89.9 | text format, 5.6.11 |
change atom position, 2.33.89.3 | topological descriptors, 2.34.40 |
sequence position in multiple alignment, 2.33.72.7 | view, 2.33.89.54 |
unix directory, 2.33.89.21 | chemistry, 2.25, 2.34.27 |
changing local stick radii, 2.33.89.86 | chiral isomer generation, 2.33.30 |
surface dot size, 2.23.5.54 | chirality, 2.20.16, 2.33.30 |
channel, 2.23.14.2 | choosing ligands, 3.13.1.2 |
charge, 2.23.14.4, 5.3.2 | chroma, 2.34.90.4 |
compounds, 2.33.70.2 | cif, 2.33.84.48 |
prediction, 2.33.89.11, 2.33.89.12 | circular permutation of coordinates, 2.33.69 |
state, 2.33.29 | clamp values to range, 2.34.178 |
change, 2.33.89.10 | clashThreshold, 2.19.5 |
labels, 2.34.166 | molecule, 2.33.13.1 |
classification, 2.34.44.6 | names, 2.34.29 |
clear, 2.33.10 | object, 2.33.11.2 |
graphical selection, 2.33.10 | preference, 2.19.10 |
screen, 2.33.10 | specification, 2.33.11.1 |
click and lock, 5.9.2.4 | surface by conservation, 2.33.13.3 |
clipping plane, 2.23.5.9, 2.23.5.10, 2.23.5.11, 2.33.72.6, 5.3.3 | table, 2.34.29.3 |
closer than threshold, 2.34.44.9 | volume, 2.33.13.7 |
closest sequence, 2.34.99.3 | column, 5.3.5 |
value, 2.34.56.1 | correlation, 2.33.91.3 |
cluster, 2.34.154.1 | function, 2.33.7.2 |
center, 2.34.70.9 | names, 2.33.85.1, 2.33.88.2 |
centers, 2.13.1 | of grobs, 2.34.109 |
selection, 2.34.70.9 | selection, 2.34.99 |
tree, 2.34.99.5 | combinatorial compounds, 2.34.27 |
size, 2.34.102.1 | libraries, 2.33.65.33, 2.34.102.4 |
clustering, 2.13, 2.33.65.37, 2.33.65.38, 2.33.92.7 | PDB, 2.36.92 |
clusters, 2.13, 2.13.1 | transformations, 3.10.4 |
cnMethodAverage, 2.22.6 | combining plots, 2.33.65.32 |
cnWeight, 2.19.6 | receptor and ligand stacks, 2.33.4.2 |
code, 2.34.44.6 | command, 2.34.99.4, 5.3.10 |
coil, 5.3.4 | line editing, 2.2 |
collection, 2.12, 5.3.6 | help, 2.33.45 |
color, 2.23.5.33, 2.33.11 | options, 2.1 |
accessibility, 2.33.13 | word list, 3.1.5 |
background, 2.33.13.2 | commands, 2.22.11, 5.1.1 |
example, 3.2.7 | communication protocols, 2.31 |
accessibility, 3.2.11 | comp, 2.34.105 |
alignment, 2.33.13.3 | comp_matrix, 2.33.89.20, 2.33.90.16, 5.3.11 |
atom contributions, 2.33.12 | compare, 2.18.12, 2.18.15, 2.33.14 |
bfactor, 3.2.9 | angles, 2.33.14.2 |
charge, 3.2.12 | atom, 2.33.14.1 |
electrostatic potential, 2.18.5 | by rmsd without superposition, 2.33.14.1 |
hydrophobicity, 3.2.10 | chemical tables, 2.33.35.10 |
pharmacophore, 2.33.12 | patch only, 2.33.14.3 |
potential, 2.36.25 | rmsd, 2.33.14.1 |
shape depth, 2.33.13 | surface, 2.33.14.3 |
chemical, 2.33.12, 2.33.88.1 | variables, 2.33.14.2 |
choice, 2.19.9 | compareMethod, 2.22.7 |
file, 2.37.15 | comparing two sarrays, 2.34.105 |
grob, 2.33.13.4 | comparison, 2.34.70.10 |
by atom selection, 2.33.13.4.3 | operations, 2.14.5 |
atoms, 2.23.7.1 | complete view, 2.34.144 |
map, 2.33.13.4.4 | compound accessibilities, 3.14.4.1 |
matrix, 2.33.13.4.2 | array, 2.25 |
potential, 2.33.13.4.5 | property prediction, 2.33.51.2 |
unique, 2.33.13.4.1 | compress, 2.33.15 |
label, 2.33.13.5 | alignment, 2.33.15.1 |
map, 2.33.13.6 | binary, 2.33.15.4 |
by value, 2.33.23.16 | conf, 2.33.15.3 |
in place, 2.33.15.4 | fragments, 2.33.18.2 |
objects, 2.33.15 | mol, 2.33.18.3 |
stack, 2.33.15.3 | object 3D and optmimize geometry, 2.36.85 |
compressed table view, 2.33.89.24 | macro, 2.36.13 |
conditional buttons, 5.5.5 | pdb, 3.8.2 |
string, 2.34.156.7 | to 3D, 2.33.89.8 |
conf, 2.33.89.61, 2.33.110.41, 2.34.160.6, 5.3.12, 5.8.9 | ICM object, 2.36.86 |
data, 2.34.160.6 | iarray, 2.34.166 |
confgen, 3.17 | icm-object, 2.33.18 |
configuration, 2.37.14 | integer, 2.34.166 |
file, 2.33.110.42 | convert2Dto3D, 2.36.85 |
memory usage, 2.18.7 | convert3Dto3D, 2.36.86 |
conformation comparison, 2.22.7 | convertObject, 2.36.13 |
conformational ensemble, 2.33.7.6.2 | converting a chemical, 2.33.18.3 |
generator, 2.33.66.1, 3.17 | alignment to table, 2.34.160.2 |
interpolation, 2.33.23.6 | chemicals, 3.13.1.8 |
stack, 2.33.110.41, 5.3.12, 5.8.9 | table columns into matrix, 2.34.90.6 |
compression, 2.33.15.3 | to, 2.34.123 |
file, 2.37.7 | cool, 2.36.40 |
transition, 2.36.38 | pictures, 2.23.5.30 |
conformer, 3.13.1.20 | cooling schedule, 2.19.46 |
storage, 2.33.63.5, 2.33.94.2 | coordinate frame, 2.19.4, 2.33.23.4 |
conformers, 3.17 | coordinates, 2.23.14.7 |
connect, 2.33.16, 2.33.54 | copy, 2.33.19 |
chains with alignments, 2.33.57 | chemical image, 2.23.9.15 |
molcart, 2.33.16.1 | file, 2.21.26 |
consensus, 2.19.7 | site, 2.33.89.28 |
coloring, 2.19.12, 2.23.2 | correlation matrix, 2.34.163 |
definitions, 2.23.1 | covalent bound count, 2.34.137.3 |
consensusStrength, 2.19.7 | neighbors, 2.34.101.1 |
conservation, 2.34.122.5, 2.34.136.7 | covalently attached molecule, 2.34.101.1 |
constant, 2.5 | cpk, 2.19.35, 5.3.13 |
constants, 2.5 | create a covalent bond, 2.33.65.2 |
contact areas, 2.34.90 | pharmacophore, 2.36.87 |
continue, 2.33.17 | creating a local patch object, 2.33.18.2 |
contour lines, 2.34.32 | credits, 4.5 |
surfaces, 2.23.7.5 | crypt, 2.33.20 |
contouring density, 2.33.65.14 | crystal axis vectors, 2.34.16 |
contrast, 2.23.5.33 | symmetry transformation, 3.10.2 |
conversion, 5.1.6 | transformations, 2.34.176 |
to real array, 2.34.168 | crystallographic cell, 2.33.69 |
convert, 2.33.18, 2.33.18.2 | occupancy, 2.34.107 |
3D to chemical, 2.34.27 | symmetry intro, 1.4.2.4 |
3D/0D to 2D, 2.33.65.9 | crystallography, 2.34.129 |
ICM object to PDB, 2.33.96 | csv format, 2.33.84.44 |
and reroot, 2.33.18.4 | csym, 1.4.2.4 |
chemical 3D, 2.36.82 | cube, 2.23.14.2 |
and optmimize geometry, 2.36.83 | current, 5.3.9 |
comp, 2.33.18.1 | map, 5.3.7 |
comparison, 2.33.18.1 | object, 5.3.8 |
cursor action, 5.9.2.4 | drestraint, 2.33.22.18 |
custom alignment color, 2.23.5.1 | element, 2.33.22.31 |
field, 2.33.89.51 | file, 2.33.22.9 |
interaction, 2.33.90.37 | from array, 2.33.22.6 |
menu, 2.32, 2.33.84.3 | hydrogen, 2.33.22.11 |
customization, 3.1.2 | label, 2.33.22.19, 2.33.22.20 |
environment, 2.32 | chemical, 2.33.22.20 |
and paste chemicals, 2.23.9.14, 2.23.9.15 | link, 2.33.22.21 |
cyclic temperature protocol, 2.19.46 | map, 2.33.22.22 |
cylinder, 2.23.14.2 | molcart, 2.33.22.3 |
cz32, 4.5 | molecule, 2.33.22.13 |
data visualization, 2.33.65.38 | object, 2.33.22.12 |
database, 5.4.1 | parray, 2.33.22.36 |
browser, 2.33.63.3 | element, 2.33.22.36 |
connection, 2.33.16.1 | peptide bond, 2.33.22.28 |
file, 3.5.1 | plot, 2.33.22.4 |
import, 2.33.65.26 | salts, 2.33.70.3 |
date, 2.33.21, 2.34.156.2 | selection, 2.33.22.5 |
array, 2.33.21 | selftether, 2.33.22.34 |
dcMethod, 2.22.8 | sequence, 2.33.22.23 |
dcWeight, 2.19.8 | session, 2.33.22.10 |
decomposition, 2.33.65.27, 2.33.92.2, 2.33.92.3 | shell object, 2.33.22.1 |
deep learning, 2.33.53 | site, 2.33.22.24 |
defCell, 2.24.1 | alignment, 2.33.22.26 |
defSymGroup, 2.18.2 | sstructure, 2.33.22.25 |
default atom colors, 2.33.89.16 | stack, 2.33.22.29 |
color of label, 2.19.11 | object, 2.33.22.30 |
parameters, 2.22.1 | system, 2.33.22.9 |
value, 5.8.2 | table, 2.33.22.32 |
define axis, 3.10.3 | rows, 2.33.22.32 |
defining space box, 2.34.21 | term, 2.33.22.33 |
dehtml, 2.34.126.3 | tether, 2.33.22.35 |
del, 2.33.22.9 | tree, 2.33.22.36 |
delete, 2.33.22 | variable, 2.33.22.6 |
3D graphics panel, 2.33.105 | views, 2.33.22 |
alias, 2.33.22.2 | backbone, 2.34.137.1 |
array element, 2.33.22.6 | restraint, 2.33.22.18 |
index, 2.33.22.6 | deleting, 2.33.22.26 |
selection, 2.33.22.1 | sites by number, 2.33.22.24 |
atom, 2.33.22.7 | delphi, 2.36.25 |
bond, 2.33.22.14 | density correlation, 2.19.8, 3.11.3 |
boundary, 2.33.22.15 | fitting, 2.22.8 |
chemical, 2.33.22.37 | in unit cell, 2.33.65.23 |
fragment, 2.33.22.37 | densityCutoff, 2.19.13 |
selection, 2.33.22.37 | dependent columns, 2.33.1.1.1 |
class, 2.33.22 | depth cueing, 2.33.13.7, 5.4.2 |
column table, 2.33.22.16 | depth-cueing, 2.19.17 |
conf, 2.33.22.17 | desolvation, 2.22.25 |
directory, 2.33.22.8 | detecting bad covalent geometry, 2.33.90.12 |
disulfide bond, 2.33.22.27 | proximity, 2.34.44.9 |
dialog generation, 2.34.11 | between stack conformations, 2.34.90.11 |
in html documents, 2.33.44 | restraint, 5.4.6 |
tables, 2.33.44 | file, 2.37.9 |
scripting, 2.34.11 | type file, 2.37.8 |
dielConst, 2.19.14 | restraints, 2.33.89.22 |
dielConstExtern, 2.19.15 | distances, 2.34.102.3 |
dielectric constant, 2.19.14 | distribution, 1.3, 2.33.65.32 |
diff, 2.34.105 | comparison, 2.34.136 |
dihedral, 2.36.4 | disulfide bond, 5.4.5 |
angle, 2.33.65.19 | diverse subset, 3.14.6.4 |
calculation, 3.3.10 | dividing chemical into individual molecules, 2.34.154.4 |
directory, 2.33.22.8, 2.33.65.5, 2.34.135 | dna to protein sequence translation, 2.34.175.1 |
display, 2.33.23 | rna conversion, 2.34.138.1 |
GUI window, 2.33.23.26 | translate, 2.34.175.1 |
box, 2.33.23.7 | dockBatch, 3.13.1.7 |
clash, 2.19.5, 2.33.23.8 | dockScan, 3.13.1.18 |
contact, 2.33.65.16 | docking, 2.36.89 |
drestraint, 2.33.23.9 | intro, 3.13.1.5 |
field, 2.23.5.3 | result viewing, 2.36.28 |
from script, 2.33.23.3 | simple models, 3.14.3 |
gradient, 2.33.23.10 | timing, 3.13.1.3 |
grob, 2.33.23.11 | with template, 3.13.1.22 |
label, 2.33.23.12 | docksub, 3.13.1.19 |
gui, 2.33.23.26 | docksyb.icm, 3.13.1.19 |
hbond, 2.33.23.13 | documents, 5.5.8 |
label, 2.33.23.15 | dollar separated file, 2.33.84.44 |
map, 2.23.5.13, 2.33.23.16 | dominant color, 2.34.29.2 |
model, 2.33.23.1 | donor, 3.6.1 |
new, 2.33.23.2 | plot intro, 1.4.3.2 |
off-screen, 2.33.23.3 | dots, 2.33.78 |
offscreen, 2.33.23.3 | dotted surface, 2.23.5.56 |
origin, 2.33.23.4 | double click action, 5.9.2.4 |
ribbon, 2.33.23.18 | drestraint, 2.33.90.18, 5.4.6 |
rotate, 2.33.23.5 | generate from structure, 2.33.65.7 |
site, 2.33.23.19 | global weight, 2.19.6 |
skin, 2.33.23.20 | set, 2.33.89.22 |
slide, 2.33.23.21 | type, 5.4.7 |
stack, 2.33.23.6 | drop, 2.19.16 |
string, 2.33.23.22 | drug, 2.12 |
surface, 2.33.23.20 | ds3D, 2.36.31 |
area, 2.23.5.3 | dsCellBox, 2.36.15 |
tethers, 2.33.23.23 | dsChem, 2.36.17 |
trajectory, 2.33.23.17 | dsCustom, 2.36.18 |
volume, 2.33.23.24 | dsPocket, 2.36.28 |
window, 2.3, 2.33.23.25 | dsPropertySkin, 2.36.19 |
distance, 2.23.5.24, 2.34.41, 5.4.3 | dsPrositePdb, 2.36.24 |
averaging, 2.22.6 | dsRebel, 2.18.5, 2.23.14.6, 2.36.25 |
contact-based, 2.34.23, 2.34.23.1 | dsSeqPdbOutput, 2.36.26 |
geometry, 5.4.4 | dsSkinLabel, 2.36.27 |
matrix, 2.34.160.5, 2.36.7 | dsStackConf, 2.36.29 |
dsXyz, 2.36.32 | error SOAP services, 2.34.49 |
dump database, 2.33.110.7 | ignoring, 2.21.25 |
dynamic gui, 5.5.5 | error/warning bits cleanup, 2.33.10 |
ecepp, 5.5.1 | errorAction, 2.22.10 |
edit, 2.33.24 | vrestraint vs_var, 2.33.89.82 |
files, 2.23.14.1 | evalSidechainFlex, 2.36.90 |
eigen value factorization, 2.34.45 | evol tree intro, 1.4.3.5 |
eigendecomposition of a matrix, 2.34.45 | evolutionary tree intro, 1.4.3.5 |
eigenvalues, 2.34.45 | exact, 2.33.35.9, 2.33.35.10 |
eigenvectors, 2.34.45 | match, 2.34.126.1 |
electro intro, 1.4.2.9 | example scripts, 3.14 |
electroMethod, 2.22.9 | excel, 2.33.84.44, 2.33.110.10 |
density, 2.23.7.5, 2.33.89.36, 2.33.90.21, 2.36.42, 2.36.43 | exit, 2.33.34 |
around selection, 2.19.25 | exitSeslogStyle, 2.22.11 |
map generation, 2.19.1 | expanding substructure match, 2.33.89.70 |
maps, 2.23.14.1 | export, 2.33.110.7 |
electrostatic boundary matrix, 2.34.90.10 | animation, 2.33.110.31 |
coloring, 2.23.14.6 | pdb, 2.23.14.14 |
isopotential surfaces, 2.33.65.13 | exporting sdf, 2.33.110.11 |
potential, 2.33.13.4.5 | expression shortcuts, 2.10.1.2 |
solvation, 3.7.2 | tags, 2.24.9 |
surface, 2.36.25 | comparison, 2.14.5 |
troubleshooting, 5.7.13 | arithmetics, 2.14.2 |
electrostatics, 2.23.14.6 | assignment, 2.14.1 |
intro, 1.4.2.9 | comparison, 2.14.5 |
elements, 2.23.9.16 | logical, 2.14.3 |
ellipsoid, 2.34.163 | extending to bonded hydrogens, 2.34.137.6 |
elseif, 2.33.25 | terminal atoms, 2.34.137.6 |
empty model, 2.34.109 | external process, 2.33.65.1 |
enamine, 3.19 | extracting from Markush, 2.33.55 |
endfor, 2.33.26 | icm script arguments, 2.34.59 |
endif, 2.33.27 | stack from object, 2.33.63.5 |
endmacro, 2.33.28 | ez25, 3.7 |
endwhile, 2.33.33 | factor, 5.8.13 |
energetics, 3.7 | false negatives, 2.34.136.4 |
function, 2.23.14.3 | family, 2.33.89.38.1 |
profile, 2.36.84 | faq, 1.3 |
terms, 2.17 | cheminformatics, 3.14.6 |
ensemble, 2.33.63.1, 2.33.94.1 | chemsuper, 3.14.5 |
average, 3.7.5 | mac gui preferences, 3.14.6.2 |
entropy of alignment, 2.34.136.7 | molcart dump, 3.14.6.3 |
atom, 2.33.18.4 | query, 3.14.6.1 |
enumerate, 2.33.29, 2.33.30, 2.33.31, 2.33.32 | multiple chem overlay, 3.14.5.1 |
charge, 2.33.29 | residue table, 3.14.4.1 |
chiral, 2.33.30 | fast Fourier transform, 2.33.65.24 |
library, 2.33.32 | sequence search, 2.33.35.3 |
tautomer, 2.33.31 | fasta, 2.23.12.15, 5.5.2 |
enumeration, 2.34.27 | format, 2.33.110.1 |
eps files, 2.21.23 | feature table, 5.8.6.1 |
equipotential surface, 2.34.32 | in sequences, 2.33.89.26 |
field, 2.33.89.35 | fogStart, 2.19.17 |
name, 2.34.99.2 | fold search, 5.8.4 |
file, 2.33.110.24 | foldbank.db, 2.37.3 |
exists, 2.34.50 | folding procedure, 3.14.1 |
list, 2.34.59 | font, 2.33.58.1 |
length, 2.34.55 | size, 2.33.89.38.1, 2.37.14 |
object origin, 2.34.55 | sizes, 3.14.6.2 |
permissions, 2.34.55 | specification, 2.33.89.38.1 |
time modified, 2.34.55 | for, 2.33.37 |
type, 2.34.55 | fork, 2.33.38, 2.34.70.1 |
files, 2.37 | formal charge, 2.23.5.20, 2.33.89.12, 5.3.2 |
filling volume, 2.23.5.11 | formatdb, 2.33.110.25 |
filter, 2.33.35.10, 2.33.63.3 | fprintf, 2.33.39 |
functions, 5.5.4 | fractional coordinates, 2.34.192.4 |
filtering table rows, 5.5.4 | to abs coordinates, 2.34.16 |
find, 2.33.35 | fragment, 3.13.1.23 |
alignment, 2.33.35.1 | fragmented molecule, 2.33.18.2 |
and replace a chemical pattern, 2.33.70.1 | frame, 2.33.94, 2.33.110.31 |
chemical fragment, 2.33.70 | fullscreen, 2.33.89.85 |
chemical, 2.33.35.5 | function, 2.33.40, 2.33.64 |
pattern, 2.33.70 | columns, 2.33.1.1.1 |
substructure, 2.34.70.2 | functions, 5.1.1 |
database, 2.19.2, 2.33.35.2 | selecting in objects, 2.8.10 |
fast, 2.33.35.3 | gamess, 5.5.6 |
family of commands, 2.33.35 | expansion, 2.34.146.4 |
in sarray, 2.34.70.8 | gapExtension, 2.19.18 |
molcart, 2.33.35.9, 3.5 | gapFunction, 2.24.3 |
molecule, 2.33.35.4 | gapOpen, 2.19.19 |
motifs, 2.24.9 | gaussian averaging, 2.34.146.2 |
pattern, 2.33.35.8 | gcMethod, 2.22.13 |
pdb, 2.33.35.6 | genbank, 2.23.12.15 |
pharmacophore, 2.33.35.11 | generalized arrays, 5.1.6 |
prosite, 2.33.35.7 | generate intermediate conformers, 2.36.38 |
scaffold, 2.34.179 | generating movie images, 3.9.2.1 |
table, 2.33.35.10 | genomics, 1.4.3.1 |
findFuncMin, 2.36.33, 2.36.34 | clustering, 2.33.43.2 |
findFuncZero, 2.36.35 | intro, 1.4.3.1 |
findSymNeighbors, 2.36.16 | geometry optimization, 2.33.66.1 |
find_related_sequences, 2.36.33 | started, 1.7 |
finding long covalent bonds, 2.34.137.1 | getting data from outside, 2.31 |
fingerprint, 2.34.41 | started, 1.7 |
fingerprints, 2.9 | giga, 3.18, 3.19 |
to density, 2.22.8 | sized, 3.18, 3.19 |
fix, 2.33.36 | giga-sized, 3.18, 3.19 |
fixed branches, 2.34.137.2 | ginger, 3.13.1.20 |
flattening 3D molecule, 2.36.17 | global, 2.33.41 |
flexible superimpose, 2.36.50 | glossary, 5 |
flow control, 2.15 | go, 2.34.44.6 |
fog, 2.19.17, 2.33.13.7, 2.33.23.24, 5.4.2 | goto, 2.33.42 |
color, 2.19.17 | term, 2.19.20, 2.33.89.73 |
gpu, 3.13.1.21 | energy, 2.33.23.14 |
graph matching, 2.34.133 | list, 2.34.160.10 |
graphical box, 2.33.23.7 | show, 2.33.90.23 |
row selection, 2.34.70.5 | hbondMinStrength, 2.23.5.25 |
selection, 2.34.137.5 | faq, 3.3.4 |
graphics, 2.19.9, 2.33.89.4, 2.34.188, 3.2, 5.3.3 | how to, 3.3.4 |
card, 2.23.5.52 | header, 2.33.1.1 |
controls, 2.3, 2.37.15, 5.4.2 | helical axis, 2.36.36 |
exists, 2.34.50 | cylinders, 2.23.5.42 |
intro, 1.4.1, 1.4.1.4 | helicity, 3.7.6 |
learning, 3.2.1 | content calculation, 3.7.6 |
attributes, 2.19.4 | help, 2.33.45, 2.33.45.1, 2.33.45.2 |
fogStart, 2.19.17 | browser, 2.33.45.1 |
view vector, 2.33.89.80 | commands, 2.33.45.3 |
graphviz, 2.34.160.7 | functions, 2.33.45.4 |
greedy matching, 2.10.1.4 | getting, 3.1.1 |
grid energy, 2.33.90.21 | word, 2.33.45.2 |
potentials, 2.33.65.25 | getting, 3.1.1 |
grob, 2.33.54, 5.5.3 | heterogenous environment, 2.23.14.2 |
coloring, 2.33.13 | hidden blocks, 5.1.1.1 |
files, 2.37.10 | display, 2.33.23.3 |
inside-out flip, 2.33.89.42 | hydrogens, 2.23.5.32 |
normal directions, 2.33.89.42 | stack in object, 2.33.94.2 |
vertex, 2.23.5.21 | hierarchical, 2.13 |
translate, 2.33.103 | highEnergyAction, 2.22.14 |
group, 2.33.43 | his-tags, 2.34.180 |
by column, 2.33.43.4 | histogram, 2.33.65.32 |
column, 2.33.43.4 | 2D, 2.34.90 |
rename of table columns, 2.33.85.1 | history, 2.33.46, 2.33.110.40 |
replacement, 2.33.68 | delete, 2.33.22.10 |
select of table columns, 2.33.88.2 | of ICM, 1.2 |
sequence, 2.33.43.1 | hitlist, 3.13.1.17 |
unique, 2.33.43.2 | homodel, 2.36.41 |
table, 2.33.43.3 | homology modeling, 1.4.2.2, 2.33.7.6, 2.33.89.68, 2.33.89.69, 2.35.1, 3.14.4 |
grouping table by a column, 2.33.89.24 | faq, 3.14.4 |
gui, 2.33.44, 5.9.2.4 | intro, 1.4.2.2 |
exists, 2.34.50 | output, 2.33.7.6.3 |
functions, 5.5.5 | steps, 2.33.7.6.1 |
panels, 2.33.105 | to export a molcart table, 3.14.6.3 |
programming, 2.32, 2.33.44, 2.33.89.24 | html, 2.11, 2.33.44, 2.34.99.4, 5.5.8 |
gvim text editor, 5.8.2 | document order, 2.33.89.40 |
gzip files, 2.33.15.4 | tag removal, 2.34.126.3 |
hash, 2.12, 5.3.6 | html-formatted text, 5.5.8 |
table, 5.3.6 | html5, 2.11 |
haze, 2.19.17 | hue, 2.34.90.4 |
hb, 2.19.21 | hydration, 2.23.14.2, 2.34.7 |
hbCutoff, 2.19.21 | parameters, 2.37.13 |
hbond, 2.23.5.25, 2.23.5.26, 2.33.22.6, 5.5.7 | hydrogen bond, 2.23.5.25, 2.23.5.26, 2.33.65.17, 5.5.7 |
color, 2.33.23.14 | bonding parameters, 2.37.12 |
display, 2.23.5.27, 2.23.5.28 | cutoff, 2.19.21 |
display, 2.23.5.32 | gro, 2.37.10 |
placement, 2.33.89.25 | gui, 2.32 |
hydrophobicity profile, 3.3.12 | hbt, 2.37.12 |
iSee, 5.8.14 | hdt, 2.37.13 |
i_2out, 2.18.4 | htm, 2.37.11 |
i_out, 2.18.3 | iar, 2.37.35 |
iarray, 2.33.22.6, 2.34.56.1, 2.34.66.2, 2.34.70.8, 5.6.1 | lps, 2.33.7.6.2 |
making, 2.34.66.1 | map, 2.37.16 |
icb files, 5.8.14 | mat, 2.37.37 |
GUI, 2.33.89.40 | ob, 2.37.18 |
algorithms, 4.3 | pdb, 2.37.28 |
application refs, 4.4 | prf, 2.37.34 |
literature, 4.3 | rar, 2.37.38 |
archive, 2.33.84.2 | res, 2.37.20 |
arguments, 2.34.59 | rs, 2.37.23 |
binary, 2.34.108 | rst, 2.37.22 |
branching, 2.15.2 | sar, 2.37.36 |
commands, 2.33 | se, 2.37.30 |
controls, 2.15 | seq, 2.37.29 |
flags, 2.1 | tab, 2.37.25 |
functions, 2.34 | tot, 2.37.26 |
graphics, 3.2 | trj, 2.37.17 |
history, 1.2 | var, 2.37.21 |
jumps, 2.15.3 | vwt, 2.37.27 |
learning, 3.1.4 | icmCavityFinder, 2.36.14 |
loops, 2.15.1 | icmMacroShape, 2.36.88 |
macros, 2.36 | icmPmfProfile, 2.36.23 |
main refs, 4.2 | icmPocketFinder, 2.36.89 |
menus, 2.23.10.1 | icmscript, 2.33.84.4 |
method literature, 4.4 | arguments, 2.34.59 |
molecules, 2.16 | if, 2.33.47 |
object file, 2.37.18 | ignoring swiss secondary structure, 2.24.10 |
preferences, 2.22.1 | illegal smiles, 2.34.70.2 |
session, 2.22.11 | image, 3.2.6 |
shell, 3.1 | annotation, 3.2.5 |
functions, 2.35 | center, 3.2.8 |
support, 1.3 | format, 5.9.3 |
table, 2.23 | high quality, 3.2.2 |
ali, 2.37.31 | parray, 5.7.3.3 |
all, 2.37.32 | resolution, 3.2.2 |
bbt, 2.37.5 | rotation, 3.2.3 |
bst, 2.37.6 | implicit continuous solvation, 2.37.13 |
cfg, 2.37.14 | solvation, 2.33.89.72 |
clr, 2.37.15 | imposing tether, 2.33.89.68, 2.33.89.69 |
cmp, 2.37.33 | place, 2.14.4 |
cn, 2.37.9 | ops, 2.14.4 |
cnf, 2.37.7 | incidence, 2.34.90.13 |
cnt, 2.37.8 | increasing the number of shell variables, 2.37.14 |
cod, 2.37.4 | increment charge, 2.33.89.10 |
col, 2.37.24 | index expressions, 2.6 |
substring, 2.34.70.3 | l_caseSensitivity, 2.20.7 |
table, 2.33.110.24 | l_commands, 2.20.8 |
entry, 2.34.135.1 | l_confirm, 2.20.9 |
sdf-file path, 2.34.108 | l_easyRotate, 2.20.10 |
indices of labeled table rows, 2.34.70.6 | l_info, 2.20.11 |
selected table rows, 2.34.70.5 | l_minRedraw, 2.20.12 |
infinity, 2.34.168 | l_neutralAcids, 2.20.13 |
info, 2.33.48 | l_out, 2.20.14 |
molcart, 2.33.48.1 | l_print, 2.20.15 |
inner join, 2.33.50 | l_racemicMC, 2.20.16 |
insert rows, 2.33.1.4 | l_readMolArom, 2.20.17 |
integer, 5.6.2 | l_showAccessibility, 2.20.18 |
array, 2.34.66, 5.6.1 | l_showMC, 2.20.19 |
output, 2.18.4 | l_showMinSteps, 2.20.20 |
shell variables, 2.18 | l_showResCodeInSelection, 2.20.21 |
intensity, 2.34.90.4 | l_showSites, 2.20.23 |
interaction cutoff, 2.20.27 | l_showSpecialChar, 2.20.22 |
lists, 2.20.27, 2.23.14.3 | l_showSstructure, 2.20.24 |
interactive docking, 1.4.2.8 | l_showTerms, 2.20.26 |
interatomic distance, 2.19.10, 2.33.65.16, 2.34.151 | l_showWater, 2.20.25 |
potential, 2.33.89.51, 2.33.90.37 | l_updateLists, 2.20.27 |
interface comparison, 2.33.14.3 | l_warn, 2.20.28 |
residues, 3.3.5 | l_wrapLine, 2.20.29 |
torsions, 3.3.7 | l_writeStartObjMC, 2.20.30 |
view, 2.36.28 | l_xrUseHydrogen, 2.20.31 |
intermolecular bond, 2.33.72.3 | label, 2.33.23.22, 5.6.3 |
internal coordinate file, 2.37.21 | fonts, 2.37.15 |
coordinates, 2.8.9 | large text, 2.33.84.40 |
positional restraints, 5.9.4 | latent, 2.34.102.6 |
interplanar angle, 2.36.4 | learn, 2.33.51, 2.33.53, 2.34.109 |
interpolate, 2.34.29.1 | ann, 2.33.53 |
interpolation, 2.34.29.1 | atom, 2.33.51.1 |
interruptAction, 2.22.15 | chemical, 2.33.51.2 |
inverting array order, 2.34.66.2, 2.34.122.2 | left join, 2.33.50 |
italic, 2.33.89.38.1 | triangle of a matrix, 2.34.90.3 |
iterative overlay, 2.33.97 | library to replacement groups, 2.33.65.27, 2.33.92.2, 2.33.92.3 |
superposition, 2.23.14, 2.33.98 | ligand based screening, 3.15 |
javascript, 2.11 | binding, 2.36.28 |
join, 2.33.50 | docking, 3.13, 3.13.1 |
tables, 2.33.50 | intro, 1.4.2.6 |
keep, 2.33.49 | editing, 1.4.2.8 |
kernel models quality, 2.34.136.4 | editor, 2.36.37 |
mapping, 2.37.15 | fit, 3.13 |
kmz, 5.5.3 | view, 2.23.5.31 |
l_antiAlias, 2.20.1 | ligand-based, 3.19 |
l_autoLink, 2.20.2 | light, 2.23.5.34 |
l_bpmc, 2.20.3 | lightness, 2.34.90.4 |
l_breakRibbon, 2.20.4 | limits, 2.37.14 |
l_bufferedOutput, 2.20.5 | line thickness, 2.23.12.5 |
l_bug, 2.20.6 | in 2D chemicals, 2.23.9.14 |
linear chemical notation, 2.26 | ma29, 3.11 |
regression, 2.34.84 | macro, 2.33.64, 5.6.5 |
grob, 2.33.54 | macro_def, 5.6.5 |
group, 2.33.55 | main ICM references, 4.2 |
internal variables of molecular object, 2.33.56 | concepts, 3.10.1 |
ms2ali, 2.33.57 | make, 2.33.65 |
sequences to 3D objects, 2.33.57 | 3d label, 2.33.65.15 |
to alignment, 2.33.57 | angle, 2.33.65.18 |
variable, 2.33.56 | background, 2.33.65.1 |
variables, 2.33.56 | blast index, 2.33.110.25 |
linked alignment, 2.34.99 | bond, 2.33.65.2 |
sequence, 2.34.99 | chain, 2.33.65.3 |
linux shell, 2.33.99, 5.10.2 | multi, 2.33.65.3 |
list, 2.33.58 | boundary, 2.33.65.4 |
binary, 2.33.59 | directory, 2.33.65.5 |
database, 2.33.60 | distance, 2.33.65.16 |
directory, 2.33.61 | disulfide bond, 2.33.65.6 |
font, 2.33.58.1 | drestraint, 2.33.65.7 |
html documents, 2.34.99 | factor, 2.33.65.8 |
molcart, 2.33.62 | flat, 2.33.65.9 |
database, 2.33.62 | chem_array, 2.33.65.9 |
of files, 2.34.135 | grob, 2.36.36 |
updates, 2.33.66 | from image, 2.33.65.11 |
listUpdateThreshold, 2.19.23 | matrix, 2.33.65.12 |
literature, 4.1 | image, 2.33.65.11 |
load, 2.33.63 | map, 2.33.65.10 |
conf, 2.33.63.1 | matrix, 2.33.65.12 |
frame, 2.33.63.2 | potential, 2.33.65.13 |
molcart, 2.33.63.3 | skin, 2.33.65.14 |
object, 2.33.63.6 | hbond, 2.33.65.17 |
solution, 2.33.63.4 | image, 2.33.65.20 |
stack object, 2.33.63.5 | index fasta, 2.33.84.24, 2.33.110.24 |
loadEDS, 2.36.42 | key, 2.33.65.21 |
loadEDSweb, 2.36.43 | map, 2.33.65.22 |
local, 3.5.1 | cell, 2.33.65.23 |
logarithm, 2.34.85 | factor, 2.33.65.24 |
logical, 5.6.4 | potential, 2.33.65.25 |
operations, 2.14.3 | xray, 2.33.65.31 |
variables, 2.20 | molcart, 2.33.65.26 |
logical_ops, 2.14.3 | molsar, 2.33.65.27 |
logicals, 2.20 | pca, 2.33.65.29 |
long axes, 2.34.163 | peptide bond, 2.33.65.30 |
loop database rebuilding, 2.33.110.28 | plot, 2.33.65.32 |
interrupt, 2.19.47 | reaction, 2.33.65.33 |
library, 2.33.7.6.2 | sequence, 2.33.65.35, 2.33.65.36 |
modeling, 1.4.2.3 | alignment, 2.33.65.34 |
intro, 1.4.2.3 | from alignment, 2.33.65.34 |
search, 2.33.7.6.2 | random, 2.33.65.36 |
resolution shape, 2.36.88 | torsion, 2.33.65.19 |
lower case, 2.34.167 | tree, 2.33.65.37 |
unique, 2.33.65.39 | membrane, 2.23.14.2, 3.20 |
makeAxisArrow, 2.36.36 | memorizing positions, 3.2.4 |
makeIndexChemDb, 2.36.44 | menu, 2.33.67 |
makeIndexSwiss, 2.36.45 | script, 3.1.3 |
makePdbFromStereo, 2.36.46 | merge PDB, 2.36.92 |
makePharma, 2.36.87 | arrays to table, 2.33.43.3 |
makeSimpleDockObj, 2.36.47 | continuation lines, 2.33.84.39 |
makeSimpleModel, 2.36.48 | objects, 2.33.72.2 |
making predictive models, 2.33.51 | parts of molecule, 2.33.72.3 |
manual style, 1.5 | pdb, 3.4.4 |
map, 2.19.25, 2.23.5.13, 2.23.6.1, 5.6.6 | sarray into string, 2.34.158 |
aa property to sequence, 2.34.122.1 | stacks, 3.7.7 |
averaging, 2.34.146.5 | tables, 2.33.4.3, 2.33.50 |
calculation, 2.33.65.24 | merge2, 3.8.7 |
conversion, 2.33.65.31 | mergePdb, 2.36.92 |
file, 2.37.16 | several chemical, 2.34.158.1 |
fitting, 2.22.8 | merging into one molecule, 2.33.72.3 |
format, 5.6.6 | mesh, 2.34.109, 2.34.189 |
mean value, 2.34.94 | point radius, 2.23.5.21 |
min value, 2.34.95 | score, 3.13.1.12 |
name, 2.34.86 | mfMethod, 2.22.16 |
operations, 5.6.6 | mfWeight, 2.19.30 |
transformations, 2.34.146.5 | mimel, 5.6.8 |
trimming, 2.34.22 | mimelDepth, 2.19.31 |
value sigma, 2.34.133 | mimelMolDensity, 2.19.32 |
on atoms, 2.33.89.36 | minNumGrad, 2.33.66 |
contouring, 2.33.65.14 | minTetherWindow, 2.18.8 |
mapAtomMargin, 2.19.25 | minimization exit criteria, 2.33.66 |
mapSigmaLevel, 2.19.24 | minimize, 2.18.10, 2.33.66 |
mapping chemical equivalences, 2.34.70 | cartesian, 2.33.66.1 |
properties to sequence, 2.34.122.4 | loop, 2.33.66.2 |
and factors, 3.11 | stack, 2.33.66.3 |
margin, 2.23.6.1 | tether, 2.18.8, 2.33.66.4 |
mass-spectrometry functions, 2.33.30, 2.33.31, 2.33.32 | drop, 2.19.16 |
matching chemicals, 2.34.70.2 | minimizeMethod, 2.22.17 |
hydrogens, 2.33.89.70 | missing bonds, 2.33.72.3 |
matrix, 5.6.7 | loop, 2.23.5.7, 2.23.5.8 |
derivatives, 2.34.80 | residues, 2.34.54.1 |
new, 2.34.90.1 | triangles, 2.34.189 |
plot, 2.34.32 | mkUniqPdbSequences, 2.36.49 |
map value, 2.34.91 | mlr, 2.33.52 |
maxColorPotential, 2.18.5, 2.36.25 | mm26, 3.8 |
maxMemory, 2.18.7 | mmcif, 5.6.10 |
movie, 3.9.2 | mmff, 5.6.9 |
mcBell, 2.19.26 | type, 2.34.182 |
mcJump, 2.19.27 | show atom types, 2.33.90.11 |
mcShake, 2.19.28 | mnSolutions, 2.18.9 |
mcStep, 2.19.29 | mncalls, 2.18.10 |
mean force, 2.33.89.51, 2.33.90.37 | mncallsMC, 2.18.11 |
median value, 2.34.93 | mnconf, 2.18.12 |
mnreject, 2.18.14 | morph, 2.33.23.6 |
mnvisits, 2.18.15 | to tether target, 2.36.38 |
model reliability, 2.36.23 | morph2tz, 2.36.38 |
modify, 2.33.68 | morphing, 2.33.23.6, 2.33.89.68, 2.33.89.69, 2.33.94.3 |
and reroot, 2.33.18.4 | mouse controls, 2.3 |
chem, 2.33.70 | file, 2.33.110.31 |
charge, 2.33.70.2 | move, 2.33.72 |
delete salt, 2.33.70.3 | alignment sequence, 2.33.72.7 |
normalize, 2.33.70.4 | atoms, 2.33.89.3 |
chemical column, 2.33.70.3 | bonding, 2.33.72.3 |
find replace, 2.33.70.1 | column, 2.33.72.5 |
molcart, 2.33.70.5 | element, 2.33.72.4 |
rotate, 2.33.69 | file, 2.21.28, 2.33.85.3 |
modifyGroupSmiles, 2.36.37 | fragments together, 2.33.72.3 |
modules, 1.4.4 | ligand out, 2.33.92.6 |
mol, 2.33.84.49, 2.33.84.50, 2.33.110.11, 2.33.110.24, 5.6.11 | molecule, 2.33.72.1 |
file, 2.34.156.3 | ms_molecule, 2.33.72.1 |
to icm, 2.33.18.3 | multiple molecules, 2.33.72.2 |
translation, 3.2.4 | object, 2.33.72.2 |
mol-file to chem-table element, 2.34.109 | plane, 2.33.72.6 |
mol-format, 2.23.14.7 | sequence, 2.33.72.7 |
mol2, 5.6.12 | table column, 2.33.72.5 |
molcart, 2.33.16.1, 3.5 | movie, 2.33.94.3 |
connection options, 3.5.2 | images by frame, 3.9.2.2 |
molecular, 2.34.58, 5.7.3.1 | molecular simulation, 3.9.2 |
arrays, 5.7.3 | rotate view, 3.9.1 |
dynamics, 3.20 | zooming, 3.9.1 |
manipulations, 3.8 | moving grobs with molecules or objects, 2.33.54 |
modifications, 3.8.5 | selection to another object, 2.34.137.8 |
object, 5.7.1 | mpeg, 2.33.110.31 |
objects, 2.16 | ms_, 2.8.6 |
surface, 2.33.90.9, 5.8.7 | multi center drestraint, 2.22.6 |
views, 1.4.1.1 | multi-part molecule, 2.33.18.2 |
volume, 2.34.114 | multicore, 2.34.70.1 |
molecule, 2.7, 2.33.54 | multiline input, 2.33.84.5 |
create, 3.8.4 | multiple NMR models, 2.23.14.5 |
properties, 2.33.89.34 | alignment, 2.33.3.3 |
rotation, 3.2.3 | to pairwise similarities, 2.36.7 |
translation, 3.2.3, 3.2.4 | conformation storage, 5.8.9 |
create, 1.7.2 | conformations, 2.33.63.1, 2.33.94.1 |
intro, 1.7.2, 2.7 | linear regression, 2.33.52 |
sort/reorder, 2.33.91.5 | mol as text, 2.34.156.3 |
selecting, 2.8.6 | object file, 2.33.84.2 |
molt, 3.5.1 | sequence alignment intro, 1.4.3.4 |
monte carlo, 2.33.71 | smiles file format, 2.33.84.46 |
montecarlo, 2.18.11, 2.18.13, 2.18.14, 2.18.15, 2.18.19, 2.22.7, 2.33.71 | multiprocessor, 2.33.38 |
local, 2.18.16 | mutate residue, 2.33.68 |
trajectory, 2.33.23.17 | mutating residue, 3.8.5 |
moprphing, 2.36.38 | mute, 5.6.15 |
more, 5.6.13 | mysql, 2.33.16.1 |
nProc, 2.18.18 | on-line help, 2.33.45.1, 2.33.45.2 |
nSsearchStep, 2.18.17 | third, 2.34.37 |
name, 2.34.79 | only, 5.7.2 |
atom fields, 2.33.89.34 | ontology, 2.34.44.6 |
naming compounds, 2.33.89.47 | openGL window, 2.33.105 |
nearest sequence, 2.34.95 | operating system, 2.33.22.9, 2.33.99, 2.34.188, 5.10.2 |
neato, 2.34.160.7 | optimal chemical superposition, 3.14.5.1 |
neighbor joining, 2.33.65.38 | optimization, 2.33.71 |
neighbors, 2.34.151 | Hbond, 2.36.91 |
nested script, 5.8.2 | hydrogen bond, 2.36.91 |
neural network, 2.33.53 | optimizeHbonds, 2.36.91 |
real array, 2.34.122 | or, 2.14.3 |
nice, 2.36.39 | order, 2.33.3.1, 2.33.72.7 |
image, 3.2.2 | original sequence names, 2.23.12.15 |
non-redundant, 3.4.3 | os_, 2.8.5 |
normal distribution, 2.34.121 | other variables, 2.24 |
normalize chemicals, 2.33.70.4 | out-of density atoms, 2.33.90.21 |
defined, 2.34.168 | output, 2.18.3 |
nota, 1.5 | outside penalty, 2.23.6.1 |
notational conventions, 1.5 | overlap, 2.34.70.10 |
nproc, 2.33.38 | by atom pairs, 2.33.97 |
nucleotides, 2.21.24 | chemical substructure, 2.36.22 |
number, 2.18.18 | overview, 1.4 |
of dots, 2.23.5.55 | pK shift, 3.7.3 |
elements, 2.34.102 | pKa, 2.33.22.20, 2.33.89.11, 2.33.89.12 |
hydrogen bonds, 2.33.90.23 | model, 2.33.89.12 |
molecules in objects, 2.34.137.4 | packing density, 3.3.8 |
occurrences, 2.34.102 | pair-distances, 2.33.22.6 |
residues in molecules, 2.34.137.4 | pairdistance parray, 2.23.5.24 |
van der Waals contacts, 2.33.90.13 | pairwise interactions, 2.33.89.51 |
transfer from sequence, 2.33.3.2 | panel layout, 2.23.8.6 |
nvis, 2.34.66.6 | paragraphs, 2.33.110.24 |
object, 2.33.13.1, 2.33.54, 5.7.1 | parallel, 2.18.18 |
in table, 2.34.109 | computing, 2.34.70.1 |
parray, 5.7.3.1 | processing, 2.33.38 |
properties, 2.33.89.34 | parallelization, 2.34.70.1 |
stack, 5.8.9 | parameter list file, 3.14.6.2 |
to chemarray, 2.34.27 | parray, 2.33.22.6, 5.7.3 |
user fields, 2.34.54.1 | parrayTo3D, 2.36.83 |
assign comment, 2.33.89.17 | parrayToMol, 2.36.82 |
source file, 2.34.55 | parse SOAP message, 2.34.186 |
translate, 2.33.103 | parsing, 2.34.89 |
merge, 3.8.6 | web pages, 2.33.84.47 |
selecting, 2.8.5 | partial least squares, 2.33.51 |
obsolete, 2.19.54 | slide display, 2.33.23.21 |
occlusion shading, 2.33.13 | sum, 2.34.77 |
octanol transfer, 2.34.114 | passing arguments, 5.8.2 |
off, 2.33.84.22 | by reference, 2.33.64 |
format, 5.5.3 | pattern, 5.7.4 |
oligonucleotide melting, 2.34.164 | search, 2.33.35.2 |
pdb, 5.6.10, 5.7.6 | weights, 2.34.160.8, 2.34.160.9 |
file creation time, 2.34.38 | pmf, 2.22.16 |
files, 2.37.28 | residue profile, 2.36.23 |
format, 2.33.84.48 | pmf-file, 2.37.19 |
merge, 3.4.4 | pmffile, 2.37.19 |
sequence generation, 3.4.3 | png, 2.33.110.22, 2.33.110.36, 5.7.5 |
pdbDirStyle, 2.22.18 | pocket, 2.36.28, 2.36.89, 3.13.1.1 |
peptide, 5.7.7 | point coordinates, 2.34.192.1 |
docking, 3.12.5 | size, 2.23.5.21 |
folding, 1.4.2.1 | pointer array, 5.7.3 |
intro, 1.4.2.1 | polar hydrogens, 2.23.5.32 |
personal gui controls, 3.1.2 | surface area, 2.34.114 |
setup, 3.1.2 | polarization charge, 3.7.2, 5.7.13 |
ph30, 3.12 | positional constraint, 2.23.14.12 |
ph4, 5.7.8 | postscript, 2.21.23 |
object faq, 3.6.1 | potential surface, 2.23.14.6 |
pharmacophore, 2.33.12, 3.5, 5.7.8 | coloring, 5.7.13 |
faq, 3.6 | pov-ray, 2.33.110.38 |
grid type definitions, 2.33.89.73 | pow, 2.34.37 |
object, 3.6.1 | precision, 2.34.136.4 |
objects, 3.6 | predict, 2.33.76 |
pharmacophores, 3.6 | predictSeq, 2.36.61 |
psi plot, 2.36.58 | prediction model, 2.34.84 |
pipe, 2.33.84.43 | quality, 2.34.136 |
placeLigand, 2.36.50 | score, 2.34.136 |
planar angle, 2.33.65.18 | predictive models, 2.33.51.2 |
plot, 2.33.65.32, 2.33.74 | preference, 2.22 |
3D 2Dfunction, 3.12.3 | system, 2.22.1 |
shape, 3.12.4 | preferences, 3.1.2.3 |
area, 2.33.75 | prepSwiss, 2.36.62 |
grid line width, 2.23.12.5 | previous atom, 2.34.101.1 |
histogram, 3.12.2 | principal axes, 2.34.163 |
how to, 3.12 | component analysis, 3.3.9 |
simple, 3.12.1 | inertia moments, 2.34.88 |
plot2DSeq, 2.36.51 | print, 2.33.77 |
plotBestEnergies, 2.36.54 | bar, 2.33.78 |
plotCluster, 2.36.56 | image, 2.33.80 |
plotFlexibility, 2.36.55 | to string, 2.33.93 |
plotMatrix, 2.36.57 | printMatrix, 2.36.63 |
plotRama, 2.36.58 | printPostScript, 2.36.64 |
plotRose, 2.36.59 | printTorsions, 2.36.65 |
plotSeqDotMatrix, 2.36.52 | printf, 2.33.79 |
plotSeqDotMatrix2, 2.36.53 | problem, 3.14.6.2 |
plotSeqProperty, 2.36.60 | processors, 2.18.18 |
3d, 1.4.3.7 | profile, 5.7.9 |
plotting van der Waals, 3.7.1 | program overview, 1.4 |
faq, 3.7.1 | progress bar, 2.33.78 |
pls, 2.33.51 | progression, 2.33.78 |
column contributions, 2.34.160.8, 2.34.160.9 | project setup, 3.13.1.6 |
model, 2.34.160.8, 2.34.160.9 | projected alignment, 2.34.99.3 |
property, 2.33.89.52, 2.33.89.53, 2.33.89.54 | all, 2.33.84.7 |
grids, 2.19.20 | binary, 2.33.84.2 |
map, 2.33.89.73 | blob, 2.33.84.38 |
superposition, 2.33.89.73 | color, 2.33.84.13 |
prosite, 5.7.10 | column, 2.33.84.51 |
pattern, 5.7.4 | comp_matrix, 2.33.84.14 |
protac, 3.16 | conf, 2.33.84.15 |
protein docking, 2.34.192.3 | csd, 2.33.84.16 |
intro, 1.4.2.5 | csv, 2.33.84.44 |
engineering, 2.24.9 | database, 2.33.84.17 |
grid docking, 3.14.2 | drestraint, 2.33.84.18 |
health, 2.36.58 | type, 2.33.84.19 |
topology, 2.23.5.42 | entries from database, 2.33.84.8 |
protonation states table, 2.34.160.11 | factor, 2.33.84.20 |
psa, 5.7.12 | file by chunk, 2.33.84.40 |
purple box, 2.34.21 | from file, 2.33.84.1 |
qstat, 3.13.1.19 | string, 2.33.84.5 |
qsub, 3.13.1.19 | fromstring, 2.33.84.5 |
quadratic equation, 2.34.147 | ftp http, 2.33.84.9 |
quantum mechanics, 2.33.84.21, 2.33.110.17 | gamess, 2.33.84.21 |
qubic equation, 2.34.148 | grob, 2.33.84.22 |
query, 3.14.6.1 | gui, 2.33.84.3 |
molcart, 2.33.81 | html, 2.33.84.4 |
question mark operator, 2.34.156.7 | file, 2.33.84.4 |
quit, 2.33.82 | iarray, 2.33.84.23 |
property transfer via alignment, 2.34.122.3 | index, 2.33.84.24 |
r_2out, 2.19.34 | table, 2.33.84.8 |
r_out, 2.19.33 | json, 2.33.84.57 |
radii.electrostatic, 2.34.120 | library, 2.33.84.25 |
van der Waals, 2.34.120 | mmff, 2.33.84.26 |
rainbow, 2.34.29.1 | librarymmff, 2.33.84.26 |
ramachandran faq, 3.3.3 | map, 2.33.84.27 |
how to, 3.3.3 | matrix, 2.33.84.28 |
random array, 2.34.121 | menu file, 2.33.84.3 |
order, 2.34.139 | mol, 2.20.13, 2.33.84.8, 2.33.84.29 |
sequence, 2.33.65.36 | mol2, 2.33.84.8, 2.33.84.30 |
randomSeed, 2.18.19 | object, 2.33.84.32 |
randomize, 2.18.19, 2.33.83 | parray, 2.33.84.32.1 |
angles, 2.33.83.1 | pdb, 2.23.14.4, 2.23.14.5, 2.33.84.2, 2.33.84.33 |
coordinates, 2.33.83 | sequence, 2.33.84.34 |
torsions, 2.33.83 | profile, 2.33.84.35 |
rarray, 2.33.22.6, 2.34.56.1, 2.34.70.8, 2.34.122.2, 5.7.11 | prosite, 2.33.84.36 |
properties, 2.34.122.4 | rarray, 2.33.84.37 |
rdBlastOutput, 2.36.68 | sarray, 2.33.84.39, 2.33.84.40 |
rdSeqTab, 2.36.69 | sequence, 2.33.84.8, 2.33.84.41 |
reaction, 2.33.65.33 | database, 2.33.84.41.1 |
group file, 2.33.55 | smiles, 2.33.84.46 |
read, 2.33.84, 2.33.84.56, 2.33.84.57 | stack, 2.33.84.42 |
FILTER, 2.33.84.6 | string, 2.33.84.43 |
alignment, 2.33.84.12 | table, 2.33.84.44 |
csv, 2.33.84.44 | procedure, 3.8.3 |
html, 2.33.84.47 | rejectAction, 2.22.19 |
mmcif, 2.33.84.48 | relational database, 2.34.149 |
mol, 2.33.84.50 | relative accessible area of atoms, 2.22.2 |
mol2, 2.33.84.49 | release notes, 1.1 |
text, 2.33.84.40 | remarkObj, 2.36.70 |
trajectory, 2.33.84.31 | remove columns, 2.33.22.16 |
and save a fragment, 2.33.84.31.1 | expression tags, 2.34.180 |
write, 2.33.84.31.1 | file, 2.33.22.9 |
unix, 2.33.84.10 | trailing blanks, 2.34.178 |
cat, 2.33.84.11 | removing html tags, 2.33.84.47 |
variable, 2.33.84.52 | outliers, 2.34.178 |
view, 2.33.84.53 | rename, 2.33.3.1, 2.33.85 |
vrestraint, 2.33.84.54 | chemicals, 2.33.89.47 |
type, 2.33.84.55 | column table, 2.33.85.1 |
with filter, 2.33.84.6 | file, 2.33.85.3 |
xml, 2.33.84.56 | molcart, 2.33.85.2 |
readMolNames, 2.24.11 | system, 2.33.85.3 |
readcomp_matrix, 2.33.84.14 | renaming, 2.23.12.15 |
reading external tool output, 2.33.65.1 | reorder, 2.33.72.7 |
from standard input, 2.33.84.43 | alignment sequences, 2.33.110.1 |
pdb from ftp, 2.21.18 | array, 2.34.139 |
web, 2.21.19 | columns by function, 2.33.91.3 |
restraint, 2.33.84.54 | objects, 2.33.91.4 |
real, 3.19, 5.7.14 | replace matching array element, 2.34.126.1 |
array, 5.7.11 | without interpretation, 2.34.126.2 |
shell variables, 2.19 | replacing scaffold in a library, 2.33.70.1 |
space refinement, 2.33.65.31 | reproducible randomness, 2.18.19 |
reals, 2.19 | reroot, 2.33.18.4 |
rebel, 2.18.5, 2.23.14.6, 5.7.13 | selections, 3.3.6 |
rebuild molcart index, 2.33.7.11 | resLabelShift, 2.19.35 |
recalculate dependent values, 2.33.7.2 | resLabelStyle, 2.22.20 |
values, 2.33.1.1.1 | reserved names, 2.24 |
receptor, 3.13.1.1 | residue, 2.33.13.1, 5.7.16 |
preparation, 3.13.1.1 | accumulators, 2.34.63 |
redefine hydrogen coordinates, 2.33.89.25 | alignment, 2.33.89.68, 2.33.89.69 |
references, 4 | conservation, 2.34.122.5 |
refineModel, 2.36.66 | contact area matrix, 2.34.90.8 |
reflections, 2.23.5.33 | areas, 2.34.7.1 |
refresh view, 2.33.23.2 | field, 2.33.89.34 |
refs, 4.1 | gap, 2.23.5.7, 2.23.5.8 |
regexp, 2.10, 2.34.89 | label, 2.19.35, 2.33.3.2 |
back references, 2.10.1.3 | library file, 2.37.20 |
syntax, 2.10.1 | name, 2.34.79 |
regression, 2.33.51 | translation, 2.23.14.14 |
regul, 2.36.67 | number, 2.34.66.5 |
regular expression, 2.10, 2.34.70.4, 2.34.89 | table, 2.34.160.3 |
filter, 2.33.84.1 | property averaging, 2.34.146.3 |
expression, 2.34.126.3 | calculation, 2.34.63 |
regularization, 2.18.8, 2.33.66.4, 5.7.15 | proximity, 2.34.90.8 |
selection, 2.20.21 | a real, 2.34.156 |
as string, 2.34.156.8 | output, 2.33.90.45 |
function, 2.34.127 | rsWeight, 2.19.36 |
table, 3.14.4.1 | rs_, 2.8.7 |
tethering, 2.33.89.68, 2.33.89.69 | ruler, 2.19.10 |
user field, 2.34.54.1 | script, 2.33.8 |
residue_selections, 2.8.11 | running a docking job, 3.13.1.18 |
selecting, 2.8.7 | dock job, 3.13.1.9 |
resizing, 2.34.68 | script from html, 5.8.2 |
resorting nodes edges, 2.34.160.7 | s-s bond, 5.4.5 |
restore, 3.14.6.2 | s_alignment_rainbow, 2.21.1 |
defaults, 2.33.85.4 | s_blastdbDir, 2.21.2 |
preference, 2.33.85.4 | s_editor, 2.21.3 |
restraining molecules to shapes, 2.23.14.12 | s_entryDelimiter, 2.21.4 |
restraint, 3.20 | s_errorFormat, 2.21.5 |
restraints, 2.17, 2.33.89.68, 2.33.89.69 | s_fieldDelimiter, 2.21.6 |
torsion, 2.33.89.81 | s_helpEngine, 2.21.7 |
return, 2.33.86 | s_icmPrompt, 2.21.10 |
reverse complement, 2.34.138.2 | s_icmhome, 2.21.8, 3.1.2.1 |
lighting, 2.33.89.42 | s_imageViewer, 2.21.11 |
normals, 2.33.89.42 | s_inxDir, 2.21.9 |
reversing order, 2.34.66.2 | s_javaCodeBase, 2.21.12 |
rgb, 2.34.90.4, 5.7.17 | s_labelHeader, 2.21.13 |
matrix, 2.34.29 | s_lib, 2.21.14 |
ribbon, 5.7.18 | s_logDir, 2.21.15 |
bullets, 2.23.5.7 | s_out, 2.21.16 |
diagram, 2.23.5.42, 2.23.5.43 | s_pdbDir, 2.21.17 |
ribbonColorStyle, 2.22.21 | s_pdbDirFtp, 2.21.18 |
ribbonStyle, 2.22.22 | s_pdbDirWeb, 2.21.19 |
ride, 3.19 | s_printCommand, 2.21.21 |
ridge, 3.13.1.21 | s_projectDir, 2.21.20 |
right join, 2.33.50 | s_prositeDat, 2.21.22 |
rigid chemical superposition, 2.33.97 | s_psViewer, 2.21.23 |
ring, 2.34.130 | s_reslib, 2.21.24 |
center coordinates, 2.34.192.2 | s_skipMessages, 2.21.25 |
sampling, 3.17 | s_sysCp, 2.21.26 |
templates, 2.33.89.8 | s_sysLs, 2.21.27 |
rm, 2.33.22.9 | s_sysMv, 2.21.28 |
rocking, 2.33.23.5 | s_sysRm, 2.21.29 |
root mean square deviation, 2.34.136.4 | s_tempDir, 2.21.30 |
roots, 2.34.147, 2.34.148 | s_translateString, 2.21.31 |
rotate, 2.33.87 | s_userDir, 2.21.32 |
2D-chem in a table column, 2.33.87.4 | s_usrlib, 2.21.33 |
chem, 2.33.87.4 | s_webEntrezLink, 2.21.34 |
grob, 2.33.87.2 | s_webViewer, 2.21.35 |
object, 2.33.87.1 | s_xpdbDir, 2.21.36 |
view, 2.33.87.3 | sa23, 3.3 |
rotation, 2.33.23.5 | sampling grid, 2.34.192.3 |
angle, 2.34.17 | sarray, 2.33.22.6, 5.8.1 |
rounding, 2.34.122 | transformation in place, 2.33.102.1 |
print, 3.2.6 | lines, 2.33.84.1 |
sdf file, 2.33.110.11 | tether partners, 2.34.137.12 |
saving graphics to album, 2.33.65.20 | vw partners, 2.34.137.12 |
image, 2.33.110.36 | selectMinGrad, 2.19.37 |
scaffold, 2.34.178 | selectSphereRadius, 2.19.38 |
scaffolds, 2.33.55 | selected stack conformations, 2.33.22.17 |
scanMakeHitlist, 3.13.1.17 | selecting by b-factor, 2.34.137 |
scoring, 3.13.1.4 | y z, 2.34.137 |
screen X, 2.34.190 | columns, 5.9.1 |
coordinates, 2.34.190 | from clusters, 3.14.6.4 |
script, 2.34.99.4, 5.8.2 | neighboring elements, 2.34.101 |
file name, 2.34.55 | residues, 3.3.6 |
inside ICM, 5.8.2 | saving, 2.34.66.4 |
name, 5.8.2 | selection, 2.8, 2.34.137, 2.34.137.6 |
image generation, 2.33.23.3 | elements, 2.8.4 |
scripting molecular movements, 3.2.4 | examples, 2.8.3 |
sdf, 2.23.14.7, 2.33.110.24, 5.6.11 | functions, 2.8.10 |
file, 2.33.84.49, 2.33.84.50, 2.33.89.47, 2.33.110.11, 2.34.156.3, 5.7.3 | gap patching, 2.34.137, 2.34.137.11 |
to chem-table, 2.34.109 | level, 2.8, 2.34.182 |
search for chemical pattern, 2.34.56.3 | levels, 2.8.2 |
pdb headers, 3.4.5 | simplification, 2.34.137.11 |
prosite, 3.4.1 | transfer, 2.34.137, 2.34.156.8 |
sequence pattern, 2.33.35.8 | type, 2.8 |
searchObjSegment, 2.36.73 | types, 2.8.1 |
searchPatternDb, 2.36.71 | variable, 2.24.12 |
searchPatternPdb, 2.36.72 | atoms, 2.8.8 |
searchSeqDb, 2.36.74 | functions, 2.8.10 |
searchSeqFullPdb, 2.36.76 | molecules, 2.8.6 |
searchSeqPdb, 2.36.75 | objects, 2.8.5 |
searchSeqProsite, 2.36.77 | output, 2.24.15 |
searchSeqSwiss, 2.36.78 | residues, 2.8.7 |
searches and alignments, 3.4 | torsions, 2.8.9 |
second moments, 2.34.163 | variables, 2.8.9 |
secondary structure derivation from 3D, 2.33.5.1 | selections, 2.33.89.34 |
schematic, 2.23.5.42 | in molecular objects, 2.8 |
segMinLength, 2.18.20 | selftether, 2.23.14.12, 5.9.4 |
segment, 5.8.4 | seq_ali_project, 2.34.156.6 |
select, 2.33.88 | sequence, 2.34.172, 2.34.173, 5.8.3 |
atoms by number of bonded atoms, 2.34.137.3 | alignment, 2.34.5.1, 2.36.1 |
of the fixed torsions, 2.34.137.2 | intro, 1.4.3.3 |
based on alignment, 2.34.137.14 | analysis intro, 1.4.3 |
bfactor, 2.34.137.7 | assembly, 2.33.43.2 |
center of mass, 2.34.137.15 | belongs to alignment, 2.34.70 |
coordinates, 2.34.137.7 | conservation, 2.34.136.7 |
iarray, 2.34.137 | distance, 2.34.137 |
length, 2.34.137.13 | matrix from alignment, 2.34.90.9 |
occupancy, 2.34.137.7 | dotplot, 1.4.3.2 |
user field, 2.34.137.7 | from alignment, 2.33.22.23 |
chemical, 2.33.88.1 | pdb, 2.33.65.35 |
column table, 2.33.88.2 | identity, 2.36.7, 2.36.8 |
modification, 2.34.180 | error, 2.33.89.33 |
neighbor, 2.34.99.3 | field, 2.33.89.34 |
parray, 5.7.3.2 | alignment, 2.33.89.35 |
pattern, 5.7.4 | map, 2.33.89.36 |
position correspondence, 2.34.160.3 | name, 2.33.89.37 |
positional weights, 2.33.89.1 | font, 2.33.89.38 |
redundancy removal, 2.33.43.2 | grob, 2.33.89.39 |
search, 2.33.35.2 | foreground, 2.33.89.40 |
selection, 2.33.22.23 | format, 2.33.89.41 |
structure alignment, 2.35.1 | grob, 2.33.89.42 |
to alignment transfer, 2.34.122.3 | coordinates, 2.33.89.42 |
type, 5.8.3 | label, 2.33.89.42 |
sequence-alignment mapping, 2.34.156.5, 2.34.156.6 | group, 2.33.89.63 |
sequence-structure alignment, 2.34.5.1 | column, 2.33.89.24 |
output format, 2.18.21, 2.18.22 | hydrogen, 2.33.89.25 |
sequenceBlock, 2.18.21 | key, 2.33.89.43 |
sequenceColorScheme, 2.22.23 | label, 2.33.89.44 |
sequenceLine, 2.18.22 | 3d label, 2.33.89.44.4 |
sequences, 3.4 | chemical, 2.33.89.44.3 |
not in alignments, 2.33.22.23 | distance, 2.33.89.44.1 |
set, 2.33.89 | table, 2.33.89.44.2 |
alternative atom, 2.33.89.18 | map, 2.33.89.45 |
area, 2.33.89.1 | molcart, 2.33.89.46 |
atom, 2.33.89.3 | molecular variables, 2.33.89.83 |
ball label, 2.33.89.2 | name, 2.33.89.47 |
background image, 2.33.89.4 | sequence, 2.33.89.47.1 |
bfactor, 2.33.89.5 | object, 2.33.89.48 |
biological symmetry, 2.33.89.64 | occupancy, 2.33.89.49 |
bond topology, 2.33.89.7 | plane, 2.33.89.50 |
type, 2.33.89.6 | pmf, 2.33.89.51 |
and formal charges, 2.33.89.7 | property, 2.33.89.52, 2.33.89.54, 2.33.89.55 |
cartesian, 2.33.89.8 | alignment, 2.33.89.55 |
chain, 2.33.89.9 | chemical view, 2.33.89.54 |
charge, 2.33.89.10 | column, 2.33.89.53 |
formal, 2.33.89.11 | radii graphical, 2.33.89.86 |
auto, 2.33.89.12 | randomSeed, 2.33.89.56 |
mmff, 2.33.89.13 | randomize, 2.33.89.56 |
chargemmff, 2.33.89.13 | resolution, 2.33.89.57 |
chiral, 2.33.89.14 | selftether, 2.33.89.68 |
chemical, 2.33.89.15 | similarity, 2.34.44.8, 2.34.136.2 |
color, 2.33.89.16 | site, 2.33.89.26 |
comment, 2.33.89.17, 2.33.89.18 | alignment, 2.33.89.27 |
sequence, 2.33.89.19 | residue, 2.33.89.29 |
comp_matrix, 2.33.89.20 | slide, 2.33.89.30 |
current map, 2.33.89.45 | sstructure backbone, 2.33.89.59 |
object, 2.33.89.48 | sequence, 2.33.89.60 |
directory, 2.33.89.21 | to sequence, 2.33.89.60 |
drestraint, 2.33.89.22 | stack, 2.33.89.61 |
type, 2.33.89.23 | energy, 2.33.89.61, 2.33.94.1 |
electrostatic radii, 2.33.89.79 | stereo, 2.33.89.58 |
name, 2.33.89.62 | area, 2.33.90.9 |
symmetry, 2.33.89.65 | atom, 2.33.90.10 |
bio, 2.33.89.64 | type, 2.33.90.11 |
crystal, 2.33.89.63 | atoms, 2.33.90.10 |
group, 2.33.89.63 | bond, 2.33.90.12 |
to a torsion, 2.33.89.65 | clash, 2.33.90.13 |
table, 2.33.89.66 | color, 2.33.90.14 |
tautomer, 2.33.89.31 | column, 2.33.90.15 |
terms, 2.33.89.67 | comp_matrix, 2.33.90.16 |
tether, 2.33.89.69 | database, 2.33.90.17 |
append, 2.33.89.70 | drestraint, 2.33.90.18 |
texture, 2.33.89.32 | type, 2.33.90.19 |
type, 2.33.89.71 | energy, 2.33.90.20 |
mmff, 2.33.89.77 | atom, 2.33.90.21 |
molecule, 2.33.89.75 | gradient, 2.33.90.22 |
object, 2.33.89.74 | hbond, 2.33.90.23 |
property, 2.33.89.73 | exact, 2.33.90.24 |
sequence, 2.33.89.76 | hbondexact, 2.33.90.24 |
surface, 2.33.89.72 | html, 2.33.90.25 |
variable grid, 2.33.89.84 | iarray, 2.33.90.26 |
variablegrid, 2.33.89.84 | integer, 2.33.90.27 |
view, 2.33.89.80 | key, 2.33.90.4 |
vrestraint, 2.33.89.81 | label, 2.33.90.28 |
vrestraintvs_var, 2.33.89.82 | library, 2.33.90.29 |
radii, 2.33.89.78 | link, 2.33.90.30 |
vwelradii, 2.33.89.79 | logical, 2.33.90.31 |
vwradii, 2.33.89.78 | map, 2.33.90.5 |
window, 2.33.89.85 | mol, 2.33.90.32 |
xstick, 2.33.89.86 | mol2, 2.33.90.33 |
radii, 2.33.89.86 | molecule, 2.33.90.34 |
setResLabel, 2.36.80 | molecules, 2.33.90.6 |
setcomp_matrix, 2.33.89.20 | object, 2.33.90.35 |
seticmff, 2.36.79 | pdb, 2.33.90.36 |
setting conf properties, 2.33.89.61 | pharmacophore type, 2.33.90.54 |
setvs_var, 2.33.89.83 | pmf, 2.33.90.37 |
sf-term, 2.33.89.72 | preferences, 2.33.90.38 |
sfWeight, 2.19.39 | profile, 2.33.90.39 |
sh24, 3.4 | residue, 2.33.90.40 |
shadows, 2.23.5.34 | type, 2.33.90.41 |
shell, 3.1, 5.8.5 | residuetype, 2.33.90.41 |
functions, 2.33.40 | segment, 2.33.90.42 |
intro, 1.7.1 | selftether, 2.33.90.1 |
progression, 2.33.78 | sequence, 2.33.90.43 |
warning message, 2.34.191 | shell variable, 2.33.90.3 |
shineStyle, 2.22.24 | site, 2.33.90.2 |
shininess, 2.19.40 | stack, 2.33.90.44 |
show, 2.33.90, 2.33.90.39 | svariable, 2.33.90.3 |
alias, 2.33.90.7 | table, 2.33.90.45 |
aliases, 2.33.90.7 | as database, 2.33.90.17 |
alignment, 2.33.90.8 | term, 2.33.90.46 |
uniprot, 2.33.90.48 | rarray, 2.34.146.1 |
entry, 2.33.90.48 | surface, 2.36.88 |
version, 2.33.90.49 | soap, 2.31 |
volume, 2.33.90.52 | soft trim, 2.34.178 |
map, 2.33.90.53 | solid sphere, 2.23.5.11 |
volumemap, 2.33.90.53 | solubility, 2.34.114 |
vrestraint, 2.33.90.50 | solvation, 2.22.25, 2.23.14.2 |
type, 2.33.90.51 | energy, 2.19.39, 2.22.25 |
vrestraints, 2.33.90.50 | solvent accessible area, 2.18.23 |
showcomp_matrix, 2.33.90.16 | surface, 2.23.5.55, 2.23.5.56, 2.33.90.9 |
showing weak hydrogen bonds, 2.23.5.25 | sort, 2.33.91, 2.33.91.4 |
side chain, 2.36.90 | array, 2.33.91.1 |
flexibility, 2.36.90 | arrays, 2.33.91.1 |
sigma function, 2.34.44.8, 2.34.136.2 | column, 2.33.91.3 |
level, 2.23.7.5 | table, 2.33.91.3 |
signal recognition measure, 2.36.21 | molecules, 2.33.91.5 |
similar chains, 2.34.137.13 | object, 2.33.91.4 |
similarity, 2.33.35.9, 2.33.35.10 | stack, 2.33.91.6 |
simple expressions, 2.10.1.1 | table, 2.33.91.2 |
string substitution, 2.34.126.2 | sortSeqByLength, 2.36.81 |
simplified representation, 2.23.5.16 | space group, 2.33.69 |
compound, 2.34.179 | transformations, 2.34.176 |
mesh structure, 2.33.15.2 | sparse atoms, 2.23.14.3 |
simulation duration, 2.19.47 | spawn background job, 2.33.65.1 |
temperature, 2.19.46 | special values, 2.34.168 |
intro, 1.4.2 | specificity, 2.34.136.4 |
sinking number, 2.19.35 | spectral decomposition, 2.34.45 |
site, 2.33.11.2, 5.8.6 | split, 2.33.92 |
arrows, 2.33.89.26 | column values, 2.33.92.5 |
table, 5.8.6.1 | grob, 2.33.92.1 |
sites, 2.33.22.26 | group, 2.33.92.2 |
by residue selection, 2.33.22.24 | array, 2.33.92.3 |
sequences, 5.8.6.1 | into chains, 2.33.92.6 |
sixthe power, 2.22.6 | molsar, 2.33.65.28 |
skin, 2.19.35, 5.8.7 | object, 2.33.92.6 |
intro, 1.4.1.2 | to molecules, 2.33.92.6 |
slide, 2.33.1.3, 2.34.144, 5.8.14 | sequence, 2.33.92.4 |
transition time, 2.33.23.21 | table cell, 2.33.92.5 |
slides, 2.34.190 | tree, 2.33.92.7 |
slideshow, 2.33.1.3, 2.33.23.21, 2.34.144 | splitting selection, 2.8.11 |
sln, 5.8.8 | spreadsheet, 2.33.84.44 |
slurm, 3.13.1.19 | sprintf, 2.33.93 |
smallest set of smallest rings, 2.34.130 | sql, 2.33.81, 2.33.89.46, 2.34.50.1, 2.34.99.12, 2.34.102.5, 2.34.182.2 |
smart, 2.23.14.7 | sqlite, 3.5.1 |
smarts, 2.34.70.2 | sqrt, 2.34.37 |
smiles, 2.23.14.7, 2.26 | square matrix to element pairs, 2.34.160.5 |
to chem-table element, 2.34.109 | ssThreshold, 2.19.41 |
smooth alignment, 2.34.146.4 | ssWeight, 2.19.42 |
interpolation, 2.33.94.3 | ssbond, 5.4.5 |
map, 2.34.146.5 | ssearch, 2.18.17, 2.33.95 |
ssign sstructure segment, 2.33.5.2 | subset, 2.6 |
stack, 2.18.12, 2.18.13, 2.18.15, 2.22.7, 2.33.89.61, 2.33.94, 2.33.94.1, 2.34.66.6, 2.34.160.6, 5.3.12, 5.8.9 | substring, 2.34.89, 2.34.156, 2.34.156.1 |
bin size, 2.33.14 | substructure, 2.33.35.9, 2.33.35.10 |
cleaning, 2.33.22.17 | search, 2.33.35.4 |
extension, 2.33.4.2 | grid engine, 3.13.1.19 |
multiplication, 2.33.4.2 | superimpose, 2.23.14, 2.33.97 |
merge, 3.7.7 | faq, 3.3.1 |
standard chemical form, 2.33.70.4 | how to, 3.3.1 |
deviation, 2.34.133 | minimize, 2.33.98 |
standardization, 2.33.22.11 | support, 1.3 |
chemical, 2.33.70 | suppressing view changes, 2.33.23.21 |
startup, 3.1.2.3 | surface, 2.19.35, 2.34.109, 5.8.15 |
static RMSD, 2.34.155 | accessibility, 2.33.90.9 |
and dynamic hbonds, 2.23.5.24 | area, 2.36.2, 5.8.15 |
statistical thermodynamics, 2.34.47 | charge, 5.7.13 |
stereo, 2.23.5.52, 2.33.30, 2.33.89.58 | color, 2.33.89.16 |
reconstruction, 3.8.9 | dot density, 2.23.5.55 |
stereo-specific hydrogens, 2.33.22.11 | energy, 2.22.25, 2.33.89.72 |
stereoisomer, 2.33.30 | mesh, 2.34.192.3 |
stereoisomers, 2.20.16 | point selection, 2.34.192 |
stick, 5.8.10 | term, 2.19.39 |
store, 2.33.94 | surfaceAccuracy, 2.18.23 |
conf, 2.33.94, 2.33.94.1 | surfaceMethod, 2.22.25 |
frame, 2.33.94.3 | surfaceTension, 2.19.44 |
image, 2.33.65.20 | svariable, 5.8.12 |
stack object, 2.33.94.2 | svg, 2.33.110.22 |
torsion type, 2.33.94 | export, 2.23.9.14 |
strength of hydrogen bond, 2.33.23.14 | map, 2.34.160.7 |
string, 5.8.11 | swapping protein fragments, 3.8.7 |
array, 2.34.135, 5.8.1 | swiss, 2.33.89.62 |
filtering, 2.34.178 | swissFields, 2.24.10 |
inversion, 2.34.156.1 | swissprot, 2.33.89.26 |
label, 2.33.23.12 | symmetrization of a matrix, 2.34.90.3 |
matching, 2.10, 2.34.89 | symmetry, 2.34.176 |
variables, 2.21 | faq, 3.10 |
strings, 2.21 | group, 2.18.2 |
strip, 2.33.96 | problem, 2.33.69 |
struct, 2.34.99.2 | syntax highlighting, 5.8.2 |
structural alignment, 2.33.3.5, 2.34.5.2 | sys, 2.33.99 |
optimization, 2.33.35.1 | system, 5.10.2 |
superposition, 2.33.3.5 | command, 2.33.99 |
analysis, 3.3 | copy, 2.21.26 |
comparison, 2.34.23.2 | file move, 2.21.28 |
factors, 3.11.1 | list file, 2.21.27 |
structure, 3.11.1 | remove, 2.21.29 |
sub-alignment to selection, 2.34.128 | table, 2.33.22.4, 2.33.89.52, 2.33.89.53, 2.33.89.54, 2.33.91.3, 5.9.1 |
sub-matrix, 2.34.90.2 | actions, 5.9.2.4 |
subalignment, 2.34.5.3, 5.1.1 | column, 2.34.99 |
submap, 2.34.86 | format, 2.33.89.41 |
subroutine, 2.33.64 | plot, 2.33.65.32 |
creation, 2.33.43.3 | torScan, 2.36.84 |
display style, 5.9.1 | torsion rmsd comparison, 2.33.14.2 |
expression, 5.9.2 | scan, 2.36.84 |
from matrix, 2.34.160.4 | torsions, 2.34.102.3 |
grid view, 5.9.1 | score, 2.35.2 |
of atoms and distances, 2.34.160.10 | tpsa, 5.7.12 |
operations, 5.9.2.1 | trajectory, 2.33.63.2, 2.33.94, 2.33.94.3, 5.6.14 |
plot, 5.9.2.3 | file, 2.37.17 |
principal component analysis, 2.33.65.29 | frame writing, 2.33.23.17 |
print, 2.33.90.45 | smoothing, 2.33.23.17 |
row, 2.33.72.4 | transform, 2.33.102, 2.33.102.2 |
label mark, 2.33.89.44.2 | general, 2.33.102 |
mark, 2.34.79 | grob coordinates, 2.33.102.2 |
selected row numbers, 2.34.70 | molecules, 2.33.102.2 |
subset, 5.9.2.2 | sarray, 2.33.102.1 |
show html, 2.33.108.1 | transformation, 2.34.122, 5.9.7 |
targa, 5.9.3 | vector, 5.9.7 |
target coordinates, 5.9.4 | and symmetry, 3.10 |
tautomer, 2.33.31 | transforming points, 2.34.192.5 |
tempCycle, 2.19.46 | translate, 2.33.54, 2.33.103 |
tempLocal, 2.19.45 | transparency, 2.33.89.42, 5.5.3 |
temperature, 2.19.46 | background, 2.33.110.36 |
variations in optimizer, 2.19.46 | grob, 2.33.23.11 |
template docking, 3.13.1.22 | grobs, 2.23.5.57 |
tensor product of two vectors, 2.34.90 | tree, 2.33.65.37, 2.34.99.5 |
terminal font, 2.37.14 | cluster, 2.13 |
window, 2.33.44 | delete, 2.33.22.36 |
terms, 2.17 | label format, 2.34.99.5 |
hydrogen bonding, 2.19.21 | representatives, 2.13.1 |
test, 2.33.100 | trim string array, 2.33.102.1 |
binary, 2.33.100.1 | trimming grid map values, 2.34.178 |
testing if argument exists, 2.34.59 | true positives, 2.34.136.4 |
tether, 2.23.14.12, 2.33.110.9, 5.9.4, 5.9.5 | truncate alignment, 2.33.65.34 |
text, 2.34.89 | values, 2.34.178 |
search in tables, 2.34.56.2 | grob, 2.23.5.9, 2.23.5.10 |
to script, 5.8.2 | tsShapeData, 2.23.14.12 |
texture, 5.5.3 | table format, 2.33.84.44 |
tga, 5.9.3 | two alignments, 2.34.44.13 |
then, 2.33.101 | dimensional plot, 2.34.146.2 |
thickness, 2.23.9.14 | set comparison, 2.34.44.8, 2.34.136.2 |
thread to template, 2.33.66.4 | sets, 2.34.70.10 |
threading, 2.34.5.1 | txdoc browser, 2.33.84.4 |
letter code, 2.34.172, 2.34.173 | type, 2.34.182.1 |
thumbnails, 2.34.68 | tzMethod, 2.22.26 |
tif, 5.9.6 | tzWeight, 2.19.50 |
time, 2.34.38, 2.34.156.2 | ultra large libraries, 3.13.1.23 |
timeLimit, 2.19.47 | uncharge functional groups, 2.33.70.2 |
tolFunc, 2.19.49 | unclip, 2.33.23.2 |
tolGrad, 2.19.48 | underline, 2.33.89.38.1 |
topological psa, 5.7.12 | undisplay, 2.33.104 |
window, 2.33.105 | video, 2.33.110.31 |
unfix, 2.33.106 | view, 2.23.5.9, 2.23.5.10, 2.33.89.55 |
union, 2.34.70.10 | point, 2.34.190 |
unique, 2.33.13.1, 5.10.1 | restoration, 2.34.73 |
atomic order, 2.33.65.39 | transition, 2.33.89.80 |
column values, 2.33.43.4 | views, 5.8.14 |
names, 2.34.99 | virtual, 5.10.3 |
new object name, 2.34.99 | arrays, 2.33.1.1.1 |
smiles, 2.33.65.39 | chemistry, 2.33.70, 2.34.102.4 |
unix, 2.33.99, 5.10.2 | field, 2.33.7.2 |
grep, 2.33.84.1 | ligand screening, 3.13, 3.13.1 |
unlink alignments, 2.33.22.21 | intro, 1.4.2.7 |
sequences, 2.33.22.21 | screening, 3.18, 3.19 |
variables, 2.33.22.21 | visitsAction, 2.22.28 |
update database, 2.33.70.5 | vls, 3.13, 3.13.1 |
speadsheet, 2.33.1.1.1 | cluster, 3.13.1.15 |
updates, 1.1 | intro, 1.4.2.7 |
updating atom pairs, 2.20.27 | job queueing, 3.13.1.15 |
upper case, 2.34.171 | overview, 3.13.1 |
url string parsing, 2.34.160 | parallelization, 3.13.1.14 |
user atom display, 2.23.5.3 | results, 3.13.1.17 |
commands, 2.33.84.3 | scores storage, 3.13.1.16 |
defaults, 2.33.110.42 | threshold, 3.13.1.11 |
environment, 3.1.2.2 | vls_intro, 3.13.1.10 |
menu, 2.23.10.1 | volume, 5.10.4 |
menus, 2.32 | vrestraint, 5.10.5 |
user-defined properties, 2.33.89.34 | file, 2.37.23 |
solvation parameters, 2.34.7 | type, 5.10.6 |
user_startup, 3.1.2.4 | file, 2.37.22 |
icm, 3.1.2 | vs_, 2.8.9 |
guide, 3 | vs_out, 2.24.15 |
v-synthes, 3.13.1.23 | vwCutoff, 2.19.52 |
v_, 2.8.1 | vwExpand, 2.19.53 |
van der Waals surface, 2.23.5.56 | vwExpandDisplay, 2.19.54 |
varLabelStyle, 2.22.27 | vwMethod, 2.22.29 |
variable restraint, 2.33.89.81 | vwSoftMaxEnergy, 2.19.55 |
selection, 2.8.9 | wait, 2.33.107 |
vdW gap, 2.34.151 | warning, 2.23.14.3 |
vector, 2.34.102.6 | message, 2.34.191 |
dot product, 2.34.187.1 | suppression, 2.20.28 |
length, 2.34.103 | water.dielectric constant, 2.19.15 |
product, 2.34.187.1 | waterRadius, 2.19.56 |
transformation, 2.34.104 | wavefront format, 2.33.65.11 |
vertex, 2.33.13.4.2 | web, 2.11, 2.33.108 |
connectivity, 2.34.90.13 | table, 2.33.108.1 |
vertexes, 2.33.13.4.2 | webEntrezOption, 2.22.30 |
vertical alignment block, 2.33.65.34 | weighted rmsd, 2.23.14 |
workspace, 2.23.8.6 | while, 2.33.109 |
vertices, 2.33.13.4.2 | whole string, 2.34.126.1 |
vicinity, 2.19.51 | window averaging, 2.34.146.1 |
width and height, 2.34.190 | session, 2.33.110.40 |
windowSize, 2.18.24 | several array, 2.33.110.8 |
movie, 2.33.110.31 | simple object, 2.33.110.33 |
wire, 5.10.7 | stack, 2.33.110.41 |
wireBondSeparation, 2.19.57 | system preference, 2.33.110.42 |
wireStyle, 2.22.31 | table, 2.33.110.10 |
workspace, 2.33.105 | mol, 2.33.110.11 |
write, 2.33.110 | with links, 2.33.110.19 |
album, 2.33.110.21 | tether, 2.33.110.9 |
alignment, 2.33.110.1 | tethers, 2.33.110.9 |
array, 2.33.110.8 | trajectory, 2.33.23.17 |
table, 2.33.110.8 | vs_var, 2.33.110.43 |
binary, 2.33.110.2 | writevs_var, 2.33.110.43 |
blast, 2.33.110.25 | x-ray crystallography, 2.33.90.21 |
column, 2.33.110.12 | xlsx, 2.33.84.44, 2.33.110.10 |
database, 2.33.110.13 | xml, 2.33.84.56, 2.34.89, 5.1.6 |
drestraint, 2.33.110.14 | drugbank example, 2.12 |
type, 2.33.110.15 | xpdb, 2.33.84.2 |
factor, 2.33.110.16 | xplor format, 2.33.84.27 |
gamess, 2.33.110.17 | xrMethod, 2.22.32 |
grob, 2.33.110.18 | xrWeight, 2.19.58 |
html, 2.33.110.19 | xray density to rectangular energy map, 2.33.65.31 |
iarray, 2.33.110.3 | xstick, 5.10.8 |
image, 2.33.110.20 | radii, 2.33.89.2 |
alignment, 2.33.110.23 | xyz morphing, 3.8.8 |
chemical, 2.33.110.22 | zega, 5.10.9 |
parray, 2.33.110.21 | intro, 1.4.3.6 |
index, 2.33.84.24, 2.33.110.24 | |, 2.14.3 |
blast, 2.33.110.25 | |
fasta, 2.33.110.24 | |
library, 2.33.110.26 | |
map, 2.33.110.27 | |
matrix, 2.33.110.6 | |
model, 2.33.110.28 | |
mol, 2.33.110.29 | |
mol2, 2.33.110.30 | |
molcart, 2.33.110.7 | |
movie, 2.33.110.31 | |
object, 2.33.110.32 | |
parray, 2.33.110.34 | |
simple, 2.33.110.33 | |
pdb, 2.23.14.14, 2.33.110.35 | |
png, 2.33.110.36 | |
postscript, 2.33.110.37 | |
pov, 2.33.110.38 | |
povray, 2.33.110.38 | |
project, 2.33.110.2 | |
rarray, 2.33.110.4 | |
sarray, 2.33.110.5 | |
sequence, 2.33.110.39 | |
|