ICM User's Guide: The 3D Fully Interactive Ligand Editor

ICM GUI Manual

ICM Manual v.3.9

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Introduction
Help Videos
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Sequences & Alignments
Protein Modeling
Cheminformatics
Learn and Predict
Docking
Virtual Screening
Molecular Dynamics
Quantum Mechanics
MolScreen
3D Ligand Editor
Tables and Plots
Local Databases
ICM-Scarab
KNIME
Tutorials
FAQs

Index

17 The 3D Fully Interactive Ligand Editor

17.1 Setup Ligand and Receptor
17.2 Ligand-Editor-Preferences
17.3 Display Options
17.4 Evaluate Ligand Score and Strain
17.5 Edit Ligand
17.6 Virtual Screen: Find Best Replacement Group
17.7 Multiple Position Group Scan
17.8 Bioisostere Scan
17.9 Dock or Minimize Ligand
17.10 Dock from Table
17.11 Fragment Linking Core Replacement
17.12 Impose Tethers or Distance Restraints
17.13 Defined Flexible Receptor Groups
17.14 Side Chain Refinement
17.15 Multiple Receptor Docking
17.16 Covalent Docking in the Ligand Editor
17.17 Dock to Atomic Property Fields
17.18 AI Decoration (groupGen)
17.19 Predict Exit Point (Exit Point)
17.20 How to Save Ligand Receptor Complex as PDB
17.21 Peptide Modeling
17.22 Export Docking Project.
17.23 Close and Clean Up Project

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