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Oct 13 2025
Feedback.
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Index
| 2D, 6.8.8, 10.3.24, 10.3.28, 10.14, 10.20.2, 10.20.4 | CPK, 3.7.1 |
| Chemical Label, 6.8.11 | ChEMBL, 4.2.3, 10.1 |
| Interaction Diagram, 16.3.7 | Chemical Cluster, 21.6.3 |
| bioisostere, 10.9.1 | Search, 21.6.2 |
| chemical label, 6.8.11 | CisTransAmide Angle, 13.1.9.4 |
| from PDB, 10.1.1 | Clash Threshold, 4.7.10 |
| interaction diagram, 10.6 | DNA, 4.3, 8, 8.3.3 |
| screening, 15 | Decomposition, 10.36.3 |
| to 3D, 10.20, 10.20.3 | Display, 22.2.26 |
| depiction, 10.20.2 | Distance, 13.1.9.4 |
| 3D, 6.6, 6.8.8, 10.1.3, 10.3.24, 10.3.28, 10.3.31, 10.20.2, 21.2 | Dock Directory, 4.7.2 |
| QSAR, 10.38.4, 11.4, 21.14 | Docking, 22.2.26 |
| chemical, 10.4.16, 10.20.1 | Drug Bank, 4.2.8 |
| interactive ligand editor, 3.7.5 | Editor, 4.7.2 |
| ligand editor, 16.3.4 | Eintl, 12.1.1.8 |
| object, 6.3.9 | Error in saving configuration settings: You are not a license administrator, 22.1.10 |
| pharmacophore, 13.3, 16.3.11 | FILTER.Z, 4.7.2 |
| print, 6.7 | gz, 4.7.2 |
| printing, 6.7 | uue, 4.7.2 |
| screening, 15 | FTP.createFile, 4.7.11 |
| stereo, 6.6 | keep File, 4.7.11 |
| 3DMOLT, 18.5 | proxy, 4.7.11 |
| 3DQsar, 11.4 | Filter.zip, 4.7.2 |
| 3D_Similarity_PDB_Search, 5.7 | Force Auto Bond Typing, 4.7.11 |
| 3Dqsar tutorial, 21.14 | Formula, 22.8.7, 22.8.10 |
| bioisostere, 10.9.2 | Free Wilson, 10.36.2 |
| predict, 5.6 | Frequently Asked Questions, 22 |
| helices strands, 5.6.1 | GAMESS, 9.20.16 |
| local flexibility, 5.6.4 | GIF, 3.6.1.15, 6.16, 6.16.2 |
| protein health, 5.6.3 | GINGER, 10.23 |
| tools identify ligand binding pocket, 5.6.6 | GPCR Modeling Example, 21.5.1 |
| oda, 5.6.5 | GRAPHIC.store Display, 4.7.3 |
| 4D, 12.2.2, 21.12.1 | NtoC Rainbow, 4.7.4 |
| dock, 16.15 | alignment Rainbow, 4.7.4 |
| docking, 4.2.2 | atomLabelShift, 4.7.7 |
| 64, 22.1.3 | ballStickRatio, 4.7.1 |
| APF, 10.37.4, 10.37.7, 10.38.4, 11.4, 15, 15.6, 21.14 | center Follows Clipping, 4.7.3 |
| template, 10.37.3 | clash Style, 4.7.3 |
| ActiveICM, 3.6.1.12 | clashWidth, 4.7.3 |
| Area, 22.2.26 | clip Grobs, 4.7.3 |
| Atom Single Style, 4.7.3 | Skin, 4.7.3 |
| Atomic Property Fields, 11.4, 21.14 | Static, 4.7.3 |
| Bad Groups, 22.8.7, 22.8.10 | discrete Rainbow, 4.7.4 |
| Baell, 10.4.9 | displayLineLabels, 4.7.7 |
| Beep, 4.7.11 | displayMapBox, 4.7.3 |
| Blast, 22.2.25 | distance Label Drag, 4.7.1 |
| BlastDB Directory, 4.7.2 | dnaBallRadius, 4.7.9 |
| alphas, 6.8.3 | dnaRibbonRatio, 4.7.9 |
| CHEMRIYA, 13.5 | dnaRibbonWidth, 4.7.9 |
| COLLADA, 3.6.1.7 | dnaRibbonWorm, 4.7.9 |
| dnaWormRadius, 4.7.9 | Interval, 4.7.4 |
| font Scale, 4.7.7 | autoSave, 22.2.33 |
| fontColor, 4.7.7 | autoSaveInterval, 22.2.33 |
| fontLineSpacing, 4.7.7 | enumeration Memory Limit, 4.7.11 |
| grobLineWidth, 4.7.3 | max Nof Recent Files, 4.7.11 |
| hbond Ball Period, 4.7.1 | Sequence Length, 4.7.4 |
| Style, 4.7.1 | splash Screen Delay, 4.7.11 |
| hbondAngleSharpness, 4.7.1 | Image, 4.7.11 |
| hbondMinStrength, 4.7.1 | table Row Mark Colors, 4.7.4 |
| hbondStyle, 4.7.1 | workspace Folder Style, 4.7.4 |
| hbondWidth, 4.7.1 | workspaceTabStyle, 4.7.4 |
| hetatmZoom, 4.7.1 | GigaScreen, 18.5 |
| hydrogenDisplay, 4.7.1 | HBA, 13.1.10, 22.8.7, 22.8.10 |
| light, 4.7.3 | HBD, 13.1.10, 22.8.7, 22.8.10 |
| lightPosition, 4.7.3 | HTTP.proxy, 4.7.11 |
| mapLineWidth, 4.7.3 | support Cookies, 4.7.11 |
| occupancy Radius Ratio, 4.7.3 | user Agent, 4.7.11 |
| occupancyDisplay, 4.7.3 | Hbond to selection, 13.1.9.4 |
| quality, 4.7.3 | Hbonds, 16.3.4 |
| rainbow Bar Style, 4.7.4 | How To Guide, 3 |
| resLabelDrag, 4.7.7 | Html, 4.2.1.6 |
| resize Keep Scale, 4.7.3 | Http Read Style, 4.7.11 |
| ribbonRatio, 4.7.9 | Hydrogen.bond, 4.7.5 |
| ribbonWidth, 4.7.9 | ICM Browser How To, 3.1 |
| ribbonWorm, 4.7.9 | Pro How To, 3.2 |
| rocking, 4.7.4 | graphics crash, 22.1.11 |
| Range, 4.7.4 | start, 1 |
| Speed, 4.7.4 | IMAGE.bondLength2D, 4.7.6 |
| selectionStyle, 4.7.3 | color, 4.7.6 |
| site Label Drag, 4.7.7 | compress, 4.7.6 |
| Shift, 4.7.7 | gammaCorrection, 4.7.6 |
| siteArrow, 4.7.7 | generateAlpha, 4.7.6 |
| stereoMode, 4.7.3 | lineWidth, 4.7.6 |
| stickRadius, 4.7.1 | lineWidth2D, 4.7.6 |
| surfaceDotDensity, 4.7.3 | orientation, 4.7.6 |
| surfaceDotSize, 4.7.3 | paper Size, 4.7.6 |
| surfaceProbeRadius, 4.7.3 | previewResolution, 4.7.6 |
| transparency, 4.7.3 | previewer, 4.7.6 |
| wire Width, 4.7.1 | print, 4.7.6 |
| wormRadius, 4.7.9 | printerDPI, 4.7.6 |
| xstick Backbone Ratio, 4.7.1 | scale, 4.7.6 |
| Hydrogen Ratio, 4.7.1 | stereoAngle, 4.7.6 |
| Style, 4.7.1 | stereoBase, 4.7.6 |
| Vw Ratio, 4.7.1 | stereoText, 4.7.6 |
| GROB.arrowRadius, 4.7.3 | INCHI, 10.20.3 |
| atomSphereRadius, 4.7.3 | IQR, 17.4.6 |
| contourSigmaIncrement, 4.7.3 | ISIS, 22.8.3 |
| relArrow Size, 4.7.3 | Icm Prompt, 4.7.10 |
| relArrowHead, 4.7.3 | InChi, 10.3.20, 10.4.12, 10.20.3 |
| GUI.auto Save, 4.7.4 | key, 10.3.20 |
| Internal Coordinates Table, 9.20.13 | PCA, 11.1, 11.5, 21.6.4 |
| Directory, 4.7.2 | analysis, 10.29 |
| JPEG, 3.6.1.15 | PDB, 4.2.1.6, 5.1.2, 5.3.3, 5.7, 8.1, 10.1.1, 16.18 |
| KMZ, 3.6.1.7 | Directory, 4.7.2 |
| LCC, 13.5 | Style, 4.7.2 |
| Log Directory, 4.7.2 | link, 17.1.40 |
| LogP, 11, 17.6 | Search, 3.6.2.12, 3.6.2.13, 3.6.2.14, 3.6.2.15, 3.6.2.16 |
| LogS, 11, 17.6 | Field, 3.6.2.13 |
| MD, 14, 14.1, 14.2, 14.3, 14.4 | Homology, 3.6.2.15 |
| MOL, 10, 10.3.3, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | Identity, 3.6.2.14 |
| MOL2, 13.1.3 | Sequence, 3.6.2.16 |
| MOLT, 18.1 | convert, 5.1.2 |
| MOVIE.frame Grab Mode, 4.7.4 | PFAM, 3.6.1.7 |
| MPO, 10.34 | PLOT.Yratio, 4.7.8 |
| Mac, 22.1.15 | color, 4.7.8 |
| Atom Margin, 4.7.10 | date, 4.7.8 |
| Sigma Level, 4.7.10 | draw Tics, 4.7.8 |
| Markush, 21.6.9 | font, 4.7.8 |
| create, 21.6.7 | fontSize, 4.7.8 |
| File Size Mb, 4.7.11 | labelFont, 4.7.8 |
| Max_Fused_Rings, 10.11 | lineWidth, 4.7.8 |
| Mnconf, 4.7.10 | logo, 4.7.8 |
| Model, 11.4 | markSize, 4.7.8 |
| MolCart, 22.9 | orientation, 4.7.8 |
| MolIPSA, 22.8.7, 22.8.10 | paper Size, 4.7.8 |
| MolLogP, 22.8.7, 22.8.10 | previewer, 4.7.8 |
| MolLogS, 22.8.7, 22.8.10 | rainbowStyle, 4.7.8 |
| MolPSA, 10.11 | seriesLabels, 4.7.8 |
| MolScreen, 15 | PLS, 11.1 |
| MolVol, 10.11 | PNG, 3.6.1.15, 4.1.14, 6.16, 6.16.2 |
| Molcart, 10.5.3 | PROTAC, 12.8 |
| MoldHf, 10.11, 22.8.7, 22.8.10 | PSA, 10.11.7 |
| Movie.fade Nof Frames, 4.7.4 | Pharmacophore RMSD, 13.1.9.4 |
| quality, 4.7.4 | PowerPoint, 21.2, 22.3 |
| Auto, 4.7.4 | Projects Directory, 4.7.2 |
| NCBI, 22.2.25 | Prosite Dat, 4.7.2 |
| NVIDIA, 22.1 | Protein, 22.2.26 |
| Nof_Atoms, 10.11 | Viewer, 4.7.2 |
| Nof_Chirals, 10.11 | Pub Chem, 4.2.9 |
| Nof_HBA, 10.11 | PubMed, 4.2.1.7 |
| Nof_HBD, 10.11 | Reference, 17.1.40 |
| Nof_Rings, 10.11 | Pubchem, 4.2.9 |
| Nof_RotBonds, 10.11 | QSAR, 11, 11.1, 17.6, 21.14 |
| Non-overlap, 13.1.9.4 | R, 10.8, 10.36.1 |
| Nvidia GL failutre, 22.1.11 | and S, 22.5.21 |
| ODA, 22.2.26 | R-Group, 10.36.3 |
| Optimal, 22.2.26 | R-groups, 16.5.3 |
| Output Directory, 4.7.2 | REAL, 10.5.5, 13.5 |
| PAINS, 10.4.9, 10.11.3 | RIDE, 18.5 |
| chemicals, 10.4.9 | RIDGE, 18.5 |
| RMSD, 5.4.2 | Xstick, 3.7.1 |
| RNA, 4.3 | a-bright, 3.7.2 |
| RTCNN, 12.1.1.4, 12.1.13.1 | about model, 11.1.1 |
| Ramachandran Plot, 5.5.9 | acceptor, 10.4.9, 10.38.1 |
| Real Format, 4.7.10 | active, 7.7, 22.3.3 |
| Label Shift, 4.7.7 | activeICM, 7.8 |
| Style, 4.7.7 | activeicm, 7.7, 7.12, 7.14, 7.14.1, 22.3 |
| RotB, 22.8.7, 22.8.10 | advanced, 7.14 |
| SALI, 10.36.5, 21.6.11 | background images, 7.15 |
| SAR, 11, 15.6, 17.4.25, 17.6 | control, 7.13 |
| table, 10.36.3, 21.6.9 | activeicmjs, 7.16 |
| SCARE, 12.2.4 | activity, 11, 17.6 |
| SCORE, 22.5.6, 22.5.17 | cliff, 10.36.5, 10.36.6, 21.6.11 |
| SDF, 10, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | tutorial, 21.6.11 |
| SEQUENCE.site Colors, 4.7.4 | add database, 10.10.3 |
| SITE.label Style, 4.7.7 | new data, 10.3.7 |
| labelOffset, 4.7.7 | to table, 16.5.7 |
| wrap Comment, 4.7.7 | adding fragment, 10.4.8 |
| SLIDE.ignore Background Color, 4.7.4 | in editor, 10.4.8 |
| Fog, 4.7.4 | adjust row height, 22.2.39 |
| SMILES, 10.1.2, 10.2.4, 10.4.12 | administration, 10.10.5 |
| Score, 12.1.1.4, 12.1.13.1 | advanced alignment selection, 8.7.14 |
| Select Min Grad, 4.7.10 | alanine, 12.2.4 |
| Show Res Code In Selection, 4.7.7 | album, 6.15.3 |
| Smiles, 22.8.7, 22.8.10, 22.8.11 | alias, 10.4.5 |
| Special Cases, 10.34.1.1 | align, 4.1.11, 10.14 |
| Strain, 12.1.13.1 | color 2D scaffold, 10.14 |
| SureChEMBL, 4.2.4 | dna protein, 8.6.4 |
| Swissprot, 3.6.1.7 | multiple, 8.6.5 |
| Dat, 4.7.2 | sequence structure, 8.6.3 |
| link, 17.1.40 | two sequences, 8.6.2 |
| Temp Directory, 4.7.2 | DNA to protein, 8.6.4 |
| USER.email, 4.7.11 | sequence, 8.6, 8.6.6 |
| friends, 4.7.11 | two sequences, 8.3.5, 8.6.2 |
| full Name, 4.7.11 | alignment, 8.3.8, 8.6.1, 8.7.7, 8.7.7.1, 8.7.16, 8.8, 10.37.5, 10.37.6, 21.4.4, 22.4.12, 22.6, 22.6.2 |
| organization, 4.7.11 | annotation tutorial, 21.4.4 |
| phone, 4.7.11 | box shade font, 8.7.7 |
| Ultra Large Libraries, 18.5 | editing, 8.7.1 |
| Uniprot, 17.1.40 | editor, 8.7 |
| VHL, 12.8 | example, 8.3.14 |
| VLS, 13.1, 13.1.1, 13.1.2, 13.1.9.2 | font size, 22.2.1 |
| preferences, 13.1.4 | format, 8.7.11 |
| Van Drie, 10.36.5 | gaps, 8.7.11 |
| Label Style, 4.7.7 | image, 8.7.2 |
| Volume, 22.8.7, 22.8.10 | profile, 21.4.4 |
| Change, 13.1.9.4 | reorder, 8.3.12 |
| Water Radius, 4.7.10 | search, 8.7.12 |
| Wilson, 10.36.2 | secondary, 21.4.4 |
| Wire Style, 4.7.1 | structure, 8.7.16, 22.6.2 |
| XPDB Directory, 4.7.2 | selection, 8.7.13 |
| profile, 8.3.8 | flexible template, 10.37.6 |
| view options, 8.7.10 | pairwise, 10.37.5 |
| color, 8.7.9 | super, 10.37.3 |
| comment, 8.7.6 | template, 16.12.3 |
| consensus, 8.7.9, 8.7.14 | tools, 10.38 |
| cut, 8.3.11 | 3DQSAR, 10.38.4 |
| display title, 8.7.10 | consensus ph4, 10.38.1 |
| editor, 8.7 | pairwise score, 10.38.2 |
| extract, 8.3.10 | screen, 10.38.3 |
| gaps, 8.7.11 | tutorial, 21.8 |
| horizontal scroll, 8.7.10 | cluster, 21.8.5 |
| image, 8.7.2 | consensus, 21.8.2 |
| multiple, 8.3.7, 8.6.5 | score, 21.8.3 |
| options, 8.7.10 | screen, 21.8.4 |
| rename, 8.7.10 | superposition, 21.8.1 |
| reorder, 8.3.12 | alignment, 10.37.7 |
| ruler, 8.7.10 | apf3Dqsa, 22.8.12 |
| save, 8.7.2 | apo, 13.1.10 |
| search, 8.7.12 | append, 17.1.44 |
| selection, 8.7.13, 8.7.14 | table, 17.1.44 |
| sequence offset, 8.7.10 | rows, 3.6.10.7 |
| table, 8.7.10 | applying prediction models, 11.2 |
| view, 8.7.10 | area, 5.5.3, 5.6.5, 12.7, 12.7.2, 12.7.3, 21.3.5 |
| alignments, 8.6, 21.4 | aromatic, 10.3.28, 10.38.1 |
| allosteric, 5.6.6 | arrange, 4.1.13.1 |
| alpha, 3.7.2 | window, 4.1.13.1 |
| channel, 4.7.6 | graph, 22.2.8 |
| ambient, 3.7.2 | as2_graph, 4.6.5 |
| amidinium, 10.15 | as_graph, 22.2.8 |
| amino acid, 4.3 | asparagine, 9.20.2 |
| acids, 10.4.6 | assign, 6.1.3 |
| anaglyph, 6.6, 22.1, 22.1.8 | 2D coordinates, 10.20.2 |
| stereo faq, 22.1.8 | helices, 5.6.1 |
| analysis, 3.6.4, 8.3 | strands, 5.6.1 |
| angle, 5.5.7, 5.5.8, 6.8.5, 6.9, 6.12.6, 10.16, 22.2.18, 22.4.16 | atom, 4.7.5, 10.3.28, 22.2.4, 22.2.5, 22.2.8, 22.2.16, 22.2.17, 22.4.10 |
| angstrom, 22.4.7 | charge, 22.4.21 |
| animate, 3.6.3.15, 6.10.7 | atomLabelStyle, 4.7.7 |
| view, 6.10.7 | atomic energy circles, 16.3.5 |
| animation, 6.10.7.1, 6.10.7.2, 6.10.7.3, 6.10.7.4 | property field, 10.37.5, 10.37.6, 16.3.11 |
| store, 6.10.7.4 | score, 10.38.2 |
| animations, 7 | fields, 5.4.6, 5.8, 10.38, 10.38.1, 10.38.3, 13, 21.8 |
| annotate, 4.6.21, 10.13 | attachment, 10.4.3, 10.5.1 |
| alignment, 8.7.6 | point, 10.35.4 |
| by substructure, 10.13 | author, 4.2.1.3 |
| plot, 17.4.24 | close tree, 10.28.5 |
| annotation, 8.7.6 | play slide, 7.13 |
| antialias, 3.6.1.15, 3.6.3.10 | autofit, 12.5 |
| lines, 3.6.3.17 | autosave, 22.2.33 |
| lines, 3.6.3.17 | available properties, 10.11.1 |
| apf, 5.4.6, 5.8, 10.37.5, 10.37.6, 10.38, 11, 12.3, 13, 13.1.9.5, 13.3, 13.4, 16.3.11, 16.17, 21.8, 21.8.1, 21.8.2, 21.8.3, 21.8.4, 21.8.5, 22.8.12 | ave, 17.7.1 |
| axes, 17.4.15 | blue lines, 8.2 |
| axis, 17.4.11 | boat, 22.5.20 |
| options, 17.4.10 | bond, 5.1.3, 5.2.3, 5.2.3.1, 5.2.3.2, 9.9, 10.4.10, 22.4.1, 22.8.7, 22.8.10 |
| grid, 17.4.10 | covalent, 22.4.2 |
| range, 17.4.10 | type, 5.1.3.1, 5.1.3.2, 10.7.1, 10.7.2, 10.7.3 |
| title, 17.4.10 | bonding, 6.1.8 |
| b-factor, 5.6.4, 21.3.10 | preferences, 4.7.1 |
| coloring scale, 22.2.38 | box, 4.7.7, 6.8.16, 8.7.7, 8.7.7.1, 22.5.9 |
| backbone, 6.1.10, 22.2.13 | alignment, 21.4.4 |
| background, 6.4.2, 6.4.3 | size, 16.9.1 |
| color shortcut, 22.2.2 | browse, 10.3.31, 12.1.12.1, 19.4 |
| images activeicm, 7.15 | mode, 10.3.31 |
| image, 6.4.3 | molt, 18.2 |
| backup, 3.6.2.11 | stack, 9.20.15 |
| bad, 10.11 | build, 6.10.7.1 |
| groups, 10.4.9 | homology model, 9.1.2 |
| ball, 4.7.5 | hydrogens, 9.20.5 |
| and stick, 3.7.1 | buried molSurface, 13.1.9.4 |
| balloon, 17.4.26 | buttons, 7.14 |
| bases, 10.4.6 | bye, 3.6.1.19 |
| basicsel, 4.6.2 | alpha, 6.1.10 |
| batch, 12.1.10, 12.7.9 | trace, 6.1.10 |
| file, 12.1.10.2 | ca-trace, 6.1.10 |
| index, 12.1.10.4 | cache, 7.14.1 |
| loaded icm object, 12.1.10.1 | calculate, 10.11, 22.5.2 |
| mol mol2, 12.1.10.3 | properties, 10.11 |
| molcart, 12.1.10.5 | sequence similarity, 8.7.15 |
| run, 12.1.11 | startup, 22.10.2 |
| bayesian classifier, 11 | carbon, 22.2.4, 22.2.5 |
| bbb, 10.11.4 | carboxylic acid, 10.15 |
| beep, 22.2.35 | cartesian, 10.23 |
| begin docking simulation, 12.1.8 | cation, 5.2.5 |
| best, 10.3.34 | cavities, 5.5 |
| bicyclics, 10.4.6 | closed, 5.5.4 |
| binding, 21.5.3, 22.2.14, 22.5.2, 22.5.10 | ccp4, 22.2.27, 22.2.28 |
| properties, 6.3.1 | cell, 5.3.2 |
| bioinfo align multiple, 8.3.7 | center, 3.6.3.20, 4.1.3, 6.12, 6.12.5, 16.3.13, 17.1.40, 22.4.22 |
| two sequences, 8.3.5 | on ligand, 16.3.13 |
| links, 8.3.9 | and representative members, 17.7.2 |
| menu, 3.6.4 | cereblon, 12.8 |
| secondary structure, 8.3.2 | chain.breaks, 22.2.34 |
| translation, 8.3.3 | chair, 22.5.20 |
| bioisoester, 10.9 | change box size, 16.9.1 |
| bioisostere, 10.9, 10.9.1, 10.9.2, 16.8 | height of all rows, 17.1.7 |
| biological, 5.3.3 | ligand, 16.5.1 |
| biomolecule, 3.6.5, 5.3.3, 21.3.8, 21.3.12 | row height, 17.1.7 |
| bit, 22.1.3 | selection, 4.6.7 |
| blast, 4.2.5, 8.4 | speed range, 6.10.7.2 |
| search, 4.2.5 | changing font in alignment editor, 8.7 |
| blood brain barrier, 10.11.4 | charge, 3.6.3.21, 5.1.3, 5.1.3.1, 5.1.3.2, 6.8.2, 10.4.3, 10.5.1, 10.7.1, 10.7.2, 10.7.3, 10.38.1, 13.1.9.4, 22.4.1 |
| check box, 7.6.6 | duplicates, 10.3.21 |
| convert, 22.8.5 | editor, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 |
| export excel, 10.2.3 | load, 10.1 |
| save, 10.2 | merge, 10.32 |
| 3D, 10.2.5 | new, 10.4.1 |
| editor, 10.2.4 | properties, 10.3.19 |
| image, 10.2.6 | query, 10.4.3, 10.5.1, 10.5.3 |
| table, 10.2.2 | read, 10.1 |
| super, 10.37 | save, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13 |
| view, 10.3.28 | search, 10.4.3, 10.5, 10.5.1, 10.5.3 |
| chembl, 4.2.3, 4.2.4 | similarity, 10.4.3, 10.5, 10.5.1, 10.5.3 |
| chemical, 10, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.4.10, 10.8, 10.10.4, 10.11.3, 10.20.2, 10.24, 10.35.4, 10.35.5, 10.37, 10.37.5, 10.37.6, 17.7.1, 21.6.4, 22.8.4, 22.8.5, 22.8.7, 22.8.8, 22.8.9, 22.8.10 | spreadsheet, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3 |
| clustering, 10.28, 10.28.6 | structure, 10.4.13 |
| descriptors, 22.8.15 | superposition, 10.37.3, 10.37.7 |
| dictionary, 10.4.4, 10.4.5, 10.4.6 | table, 10.3, 17.2 |
| draw, 21.6.1 | cheminformatics, 10, 10.3, 22.8 |
| spreadsheet tutorial, 21.6.1 | tutorials, 21.6 |
| edit buttons, 10.4.11 | chemistry, 10.24, 22.8 |
| editor, 10.4, 10.4.8 | convert, 10.20 |
| not starting, 22.1.13 | 2dto3d, 10.20.1 |
| fingerprint, 15 | pca, 10.29 |
| fingerprints, 22.8.15 | smiles, 10.20.3 |
| fragments, 10.3.33 | duplicates, 10.33 |
| group, 10.4.5 | remove.redundant, 10.33 |
| groups, 10.4.5, 10.4.8 | chemlib.so, 22.1.3 |
| modifiers, 10.35.2 | chemspace append, 21.6.4.4 |
| properties, 21.6.4 | build visualize, 21.6.4.1 |
| right click, 10.4.3 | compare, 21.6.4.8 |
| search, 10.5, 13.4 | delete row, 21.6.4.3 |
| filter, 10.5.2 | distinguish, 21.6.4.7 |
| text, 10.5.4 | export, 21.6.4.5 |
| sketch, 21.6.1 | project, 21.6.4.6 |
| space, 10.30 | select, 21.6.4.2 |
| spreadsheet, 4.2.3, 10.1.3, 10.3.1, 10.4.14, 21.6.1, 22.8.13 | chi, 6.8.5, 22.2.18 |
| compare, 10.3.22 | chiral, 10.25, 12.1.1.5 |
| template, 10.3.2 | chirality, 10.25, 12.1.1.5 |
| spreadsheets, 10.3 | considerations, 12.1.1.5 |
| substituent, 10.9 | chrome, 22.3 |
| substructure, 4.2.1.1 | cis trans proline, 21.5.2 |
| table, 16.10, 22.8.11 | clash, 4.7.5, 6.8.15 |
| display, 10.3.3 | volumes, 13.1.11 |
| tables, 17.2 | classes, 10.3.28 |
| toxicity, 10.11.3 | classification model, 15.5 |
| 2D, 10.7 | clear display and planes, 3.6.3.2 |
| 3D, 10.7 | selection, 4.6.6 |
| append, 10.4.13 | planes, 3.6.3.2 |
| clustering, 10.28, 10.28.1 | click, 4.1.12, 6.11, 6.12 |
| convert, 5.1.3, 5.1.3.1, 5.1.3.2, 9.20.1, 10.7, 10.7.1, 10.7.2, 10.7.3, 22.4.1 | clip, 6.3.10, 6.13.1, 22.2.11 |
| display.fit, 22.8.13 | clipboard, 6.15.3, 17.7.3 |
| draw, 10.4.1 | clipping, 22.2.19 |
| tool, 6.13 | compare, 10.3.29, 10.31, 10.32 |
| tools, 6.13 | table, 10.3.22 |
| clone, 3.6.1.2 | tables, 10.31 |
| close, 6.3.3, 6.3.4, 16.20 | compatible, 3.6.1.10 |
| downstream cluster, 10.28.5 | complex, 10.6, 13.1.9.3 |
| project, 16.20 | compound, 4.2.1.3, 10.24, 17.2 |
| cavities, 5.6.6 | compounds, 22.9.3 |
| cloud, 13.1.7, 13.1.7.2 | compress, 4.7.6 |
| cluster, 13.1.7, 13.1.9.5, 17.7.1 | compressed, 17.1.6 |
| representative.center, 10.28.2 | table view, 17.1.6 |
| clustering, 17.7, 21.6.3 | conditions, 10.5.2 |
| cns, 10.34 | gen, 10.23 |
| collada, 3.7.6, 6.3.7 | configuration error, 22.1.19 |
| color, 5.6.3, 6.3.2, 6.3.3, 6.3.4, 6.3.9.4, 6.4, 6.4.1, 6.8.2, 6.8.3, 8.8, 10.3.35, 10.14, 17.1.45, 17.7.4, 22.2.4, 22.2.5, 22.2.16, 22.2.20 | conformation, 9.20.18, 10.23, 12.2.2 |
| alignment, 8.7.9 | conformational entropy, 10.27 |
| background, 6.4.2 | conformations, 22.9.8 |
| by, 6.4 | conformers, 10.23 |
| alignment, 8.8 | connect, 6.3.9.1, 6.12, 6.12.7 |
| chemical, 10.3.35 | object, 6.12.7 |
| faq, 22.2.20 | connectivity, 10.4.3, 10.5.1 |
| key, 22.2.38 | consensus, 10.38, 21.8.2 |
| scale, 22.2.38 | pharmacophore, 10.38.1 |
| surface by proximity, 6.3.3 | construct, 3.6.1.1, 6.10.7.1 |
| selection, 6.3.4 | molecule, 3.6.1.1 |
| table, 10.3.27 | object, 3.6.1.1 |
| 2D sketch, 10.5.6.5 | contact, 5.5, 5.5.3, 21.3.5 |
| background, 3.6.3.18, 6.4.2 | surface, 6.3.2 |
| distance, 6.8.10 | contacts, 6.3.3, 6.3.4, 10.6, 13.1.9.6, 16.3.12 |
| mesh, 6.3.9.3 | contour, 5.3.6, 5.3.7 |
| table, 10.3.27 | convert, 5.1.2, 10.20.1, 10.20.5, 22.8.5 |
| coloring, 6.4.1 | chemical, 10.3.24 |
| column, 17, 17.1.6, 17.1.22, 17.1.25, 17.1.39, 17.1.40, 17.4, 17.4.1, 22.8.7 | 2D 3D, 10.7 |
| annotation, 17.1.41 | 3D molecular editor, 10.4.16 |
| order, 17.1.29 | from pdb, 5.1.3 |
| plot, 17.4.6 | local database, 3.6.1.6 |
| row width, 17.1.22 | pdb, 21.3.2 |
| statistics, 17.1.32 | chem, 10.7.1 |
| visibility order, 17.1.28 | smiles to 2D, 22.8.11 |
| color, 17.1.10 | local.database, 3.6.1.6 |
| hide, 10.3.8 | smiles, 10.20, 10.20.3, 10.20.4 |
| show, 10.3.8 | converting pdb, 5.1.2 |
| combinatorial chemistry, 10.35 | coordinates, 10.1.3 |
| library, 21.6.8 | copy, 10.3.25, 10.4.11, 10.4.18, 10.5.6.2, 17.1.35 |
| combine, 3.6.10.5 | cell, 17.1.36 |
| display style, 4.7.9 | chemical, 10.3.25 |
| command, 22.5.16 | loop, 9.4 |
| line, 22.2.32 | paste row, 17.1.35 |
| commands, 22.10.1 | row, 17.1.36 |
| common substructure, 10.37.1 | rows, 17.1.44 |
| compact tree, 10.28.5 | selection to table, 17.1.37 |
| covalent, 16.10.1 | default, 4.1.13 |
| bond, 5.6.2, 21.9.3 | delete, 3.6.2.1, 4.6.6, 7.6.8, 22.4.9 |
| docking, 12.4, 12.4.1, 16.16, 21.9.3 | alignment, 8.7.5 |
| tutorial, 21.9.3 | all, 3.6.2.2 |
| cpk, 6.1.5, 22.2.21 | column row, 17.1.38 |
| crash, 3.6.2.11 | label, 6.8.9 |
| creat, 7.6.1 | alignment, 8.7.5 |
| create, 17.1.1 | all, 3.6.2.2 |
| markush, 10.35.3 | angle.label, 6.9.4 |
| new objects, 4.3 | column, 17.1.38 |
| cross, 22.2.10 | distance.label, 6.9.4 |
| section, 6.13 | label, 6.8.9 |
| cryptic, 5.6.6 | row, 17.1.38 |
| crystal, 5.3.2 | selection, 3.6.2.1 |
| crystallographic analysis, 5.3 | tether, 9.20.5 |
| biomolecule, 5.3.3 | dendrogram, 10.30.1 |
| contour map, 5.3.6 | density, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 |
| convert2grid, 5.3.7 | depth, 6.3.12, 6.10.5 |
| crystallographic cell, 5.3.2 | deselect, 22.2.7 |
| load eds, 5.3.4 | design loop, 9.3, 9.20.10 |
| maps cell, 5.3.5 | deviation, 22.4.7 |
| symmetry packing, 5.3.1 | dfa, 15.3.3 |
| tools, 21.3.8 | dfz, 15.3.2 |
| cell, 3.6.5 | dialog, 7.6.5 |
| neigbor, 5.3.1 | diffuse, 3.7.2 |
| neighbors, 3.6.5 | dihedral, 5.5.8, 6.8.5, 22.2.18 |
| crystallography, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | angle, 5.5 |
| csv, 10.2.3, 17.1.2, 17.1.3, 17.1.21, 19.2 | dimensional, 22.8.6 |
| current, 22.2.22 | directories preferences, 4.7.2 |
| slide, 7.13 | directory, 4.7 |
| curves, 17.4.5 | disappearing labels, 22.1.12 |
| custom, 6.12, 10.3.3, 10.37 | dislay ligand receptor interaction, 10.6 |
| actions, 17.1.40 | display, 4.1.4, 4.1.13.1, 4.7, 5.2.3, 5.2.3.1, 5.2.3.2, 6.8.15, 6.14, 10.25, 12.1.6.3, 22.2.4, 22.2.5, 22.2.8, 22.2.10, 22.2.11, 22.2.17, 22.2.21, 22.2.30, 22.2.32, 22.4.10, 22.4.11, 22.4.20, 22.8.4 |
| fragments, 10.13 | chemical, 6.8.11 |
| label, 6.8.8 | delete distances, 6.9.4 |
| rotation, 6.12.2 | dihedral, 6.9.3 |
| customized MPO score, 10.34.1 | distance restraints, 6.8.14 |
| cut, 17.1.35 | distance2, 6.9.1 |
| vertical alignment block, 8.3.11 | angles, 6.9 |
| cyclic peptide, 9.19 | formal charge, 6.1.9 |
| cys, 5.6.2 | gradient, 6.8.17 |
| cysteine reactivity, 5.6.2 | hbond, 13.1.9.3 |
| damaged skin, 22.1.12 | hbonds, 13.1.9.4, 16.3.4 |
| dash, 22.2.12 | hydrogen, 6.1.7 |
| database, 8.4, 10.10, 10.35.4, 13.1.3, 13.1.6, 18.1, 19 | atoms ligand editor, 16.3.3 |
| file format, 13.1.3 | mesh, 6.3.5 |
| search and alignment, 8.4 | meshes, 6.3.8 |
| databases, 22.9.3 | options, 16.3 |
| decompose.library, 21.6.9 | planar angle, 6.9.2 |
| decomposition, 10.35.4, 10.36.1, 17.4.25 | tab, 3.7.1, 22.2.16 |
| toggle, 6.8.16 | macrocycles, 12.1.6 |
| CPK, 6.1.5 | maps, 12.1.4, 12.1.5 |
| angle, 6.9.2 | preferences, 12.1.6 |
| chemical, 10.3.3 | database scan, 12.1.6.2 |
| dihedral.angle, 6.9.3 | display, 12.1.6.3 |
| distance, 6.8.10, 6.8.14, 6.9.1 | general, 12.1.6.1 |
| electrostatic, 3.6.3.21 | project, 13.1.5 |
| energy.gradient, 6.8.17 | table, 13.1.5 |
| hydrogen, 6.1.7 | results display, 12.1.17 |
| polar, 6.1.7 | setup, 22.5.13 |
| macroshape, 6.3.6 | start, 12.1.3 |
| meshes, 6.3.5 | steps, 12.1.2 |
| and display.macroshape, 3.7.6 | template, 12.3 |
| molecule, 10.3.24 | templates, 16.12.3 |
| origin, 6.8.12 | tutorials, 21.9 |
| potential, 3.6.3.21 | background, 22.5.19 |
| representations, 3.7.1 | batch, 12.1.10 |
| restraints, 6.8.14 | conformations, 22.5.20 |
| ribbon, 6.1.3 | flexible.rings, 22.5.20 |
| skin, 6.1.4 | hitlist, 12.1.13 |
| status, 22.2.32 | interactive, 12.1.9 |
| surface, 6.1.6, 6.3.1 | preparation, 12.1.3 |
| surfaces, 3.7.6 | procedure, 12.1.8 |
| table, 10.3.3 | rank, 12.1.13 |
| tethers, 6.8.13 | results, 12.1.12, 12.1.12.1, 12.1.12.2, 12.1.13 |
| wire, 6.1.1 | sampling, 22.5.20 |
| xstick, 6.1.2 | score, 12.1.13 |
| distance, 5.5, 5.5.6, 6.8.10, 6.9, 10.31, 22.2.12, 22.4.8, 22.4.10 | stack, 12.1.12.2 |
| faq, 22.4.10 | template, 12.3 |
| restraint, 12.1.7 | document, 7.6.4, 7.6.5 |
| label, 4.7.7 | navigation, 7.6.7 |
| distances, 3.7.3 | documents, 6.15.3 |
| disulfide, 9.9, 9.16 | dollar, 22.10.3 |
| bonds, 9.16 | donator, 10.4.9 |
| diverse set, 17.7 | envelope, 3.7.1 |
| dock, 12, 12.1, 12.5, 16.10, 16.10.1, 21.9.3, 21.11.1, 21.11.2, 21.12.1, 22.5.3, 22.5.4, 22.5.5, 22.5.7, 22.5.8, 22.5.10, 22.5.11, 22.5.12, 22.5.13, 22.5.14, 22.5.15, 22.5.16, 22.5.21 | surface, 4.7.5 |
| apf, 16.17 | dotted line, 6.1.3 |
| chemical table, 12.1.15 | lines, 22.2.34 |
| command, 22.5.16 | double, 10.4.10 |
| macrocylce, 22.5.20 | doublet, 10.4.7 |
| table, 16.10 | download, 22.1.1, 22.9.3 |
| covalent, 16.10.1 | dpc, 15.3.4 |
| docked ligand strain, 12.1.1.8 | drag, 4.1.11, 4.7.7, 6.8.3, 7.6.4, 8.6.6, 22.4.5 |
| docking, 5.6.5, 12, 12.1.1, 12.1.2, 12.1.3, 12.1.16, 12.2, 12.2.1, 12.2.2, 12.2.3, 12.7, 12.7.1, 12.7.2, 12.7.3, 12.7.4, 12.7.5, 12.7.6, 12.7.8, 12.7.9, 12.7.10, 13.1, 13.1.1, 13.1.2, 13.1.6, 13.2, 13.5, 16.10, 16.10.1, 16.11, 21.9, 21.9.1, 21.9.2, 21.11.3, 21.12, 21.12.2, 22.5, 22.5.1, 22.5.9, 22.5.17, 22.5.18 | and drop sequences, 8.6.6 |
| batch index, 12.1.10.4 | residue label, 3.6.3.16 |
| covalent, 12.4 | draganddrop, 4.1.11 |
| display, 12.1.17 | draw, 10.4.18, 10.35.5, 22.8.2 |
| explicit group, 21.12.2 | chemical, 10.4.1 |
| from table, 12.1.9.1, 12.1.9.2 | drop, 4.1.11, 7.6.4, 8.6.6, 22.4.5 |
| introduction, 12.1.1 | drug, 10.11, 22.8.7, 22.8.9 |
| like, 10.11.4 | script, 7.13 |
| drugbank, 10.1 | browser, 7.7, 7.11 |
| druglikeness, 10.4.9 | firefox, 7.7, 7.11 |
| dsPocket, 4.1.8 | internet.explorer, 7.7, 7.11 |
| dual alanine scanning, 12.2.4 | microsoft, 7.7 |
| easy rotate, 3.6.3.12 | powerpoint, 7.7, 7.8, 7.9, 7.10 |
| ecfp, 11.3 | empty hostid, 22.1.18 |
| edit, 5.2.3.1, 16.5.8, 22.8.3 | enamine, 10.5.5 |
| 2D, 16.5.1 | real, 13.5 |
| add sequence, 10.4.17 | enantiomer, 22.5.21 |
| alignment, 8.7.1 | enantiomers, 12.1.1.5 |
| chemical moledit, 10.3.26 | energy, 5.6.3, 6.8.15, 10.27, 10.27.2, 12.1.12.2, 22.5.1, 22.5.2, 22.9.8 |
| ligand, 16.5, 16.5.1 | circles, 13.1.11 |
| 2D, 16.5.1 | maps, 12.1.4, 12.1.5 |
| editor preferences, 16.2 | terms, 9.20.19 |
| multiple substituents, 16.5.2 | ensemble, 9.20.18, 12.2.2 |
| tools, 3.6.2.17 | entropy, 10.17, 10.27.1 |
| menu, 3.6.2 | enumerate formal charge states, 10.18 |
| molecular document, 7.6.1 | reaction, 21.6.10 |
| molecule, 10.4 | enumeration, 10.35.4 |
| molt, 18.3 | eps, 10.2.6 |
| selection, 3.6.2.5 | epsilon, 22.4.15 |
| slide, 7.4.1 | eraser, 10.4.11 |
| table row, 17.1.24 | errno, 22.1.3 |
| molecule, 10.3.26 | error, 22.1.3, 22.1.19, 22.2.35 |
| structure, 10.3.26 | evaluate score strain, 16.4 |
| editor, 22.4.12 | exact, 10.31 |
| editpdbsearch, 3.6.2.12 | excel, 10.2.3 |
| eds, 5.3.4, 5.3.6, 5.3.7 | exclude fragment, 10.5.2 |
| effect of mutation, 9.14, 9.15 | volume, 16.3.11 |
| on binding tutorial, 21.5.3 | exit, 3.6.1.19 |
| example2, 21.5.3.1 | explicit, 10.3.28, 12.2.1 |
| stability tutorial, 21.5.4 | flex, 12.2.1 |
| effort, 10.23, 10.37, 22.5.12 | group, 12.2.3 |
| electron, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | docking, 12.2.3 |
| denisty map, 5.3.5 | groups, 21.12.2 |
| density map, 3.6.1.7, 3.6.5, 5.3.4, 5.3.6, 12.5 | export, 5.5.10, 19.4 |
| contour, 3.6.5 | dock project, 16.19 |
| electrostatic coloring scale, 22.2.38 | pdb, 4.5 |
| potential, 3.6.3.21 | extra windows, 6.2 |
| surface, 6.3 | extract, 4.4.2, 8.1, 10.1.3, 22.4.12, 22.8.8 |
| electrostatics, 6.3.1, 12.7.8 | 2D, 10.1.1 |
| elegant sketch, 6.10.4 | 3d coordinates to spreadsheet, 10.1.3 |
| element, 10.4.10 | icb, 3.6.1.5 |
| eln, 19.7 | object icb, 4.4.2 |
| embed browser, 7.11 | sub alignment, 8.3.10 |
| powerpoint03, 7.8 | icb, 3.6.1.5 |
| powerpoint07, 7.9 | pharmacophore, 10.5.6.4 |
| powerpoint10, 7.10 | faq, 22, 22.2, 22.2.13, 22.4, 22.5, 22.7, 22.10, 22.10.2 |
| activeicm, 7.13 | ISISdraw, 22.8.3 |
| activeicm, 22.3 | hitlist, 22.5.7 |
| path, 22.3.3 | hydrogen bond acceptors, 22.8.17 |
| alignment secondary structure, 22.6.2 | iSee, 22.2.30 |
| apf model, 22.8.12 | icmPocketFinder, 22.5.10 |
| atom charge, 22.4.21 | insert column, 22.8.7 |
| display, 22.2.17 | installation, 22.1 |
| autosave, 22.2.33 | interactions, 22.2.12 |
| backbone, 22.2.13 | ligandbox, 22.5.9 |
| background color, 22.2.2 | measure distance ring, 22.8.16 |
| job, 22.5.19 | merge, 22.4.5 |
| beep, 22.2.35 | modeling, 22.7 |
| binding energy, 22.5.2 | molcart 64bit, 22.1.3 |
| blend transition, 22.2.31 | query, 22.9.5 |
| breaks, 22.2.34 | sdf, 22.9.4 |
| change torsion, 22.4.16 | text search, 22.9.6 |
| chem table display, 22.8.4 | molecule c, 22.2.5 |
| chemical monitor, 22.8.10 | moledit, 22.8.2 |
| query2, 22.8.1 | movie planes, 22.2.19 |
| cheminformatics, 22.8 | newscript, 22.10.1 |
| clipping plane, 22.2.11 | nmr, 22.4.18 |
| closest, 22.4.22 | nvidia error, 22.1.2 |
| color carbon, 22.2.4 | origin, 22.2.10 |
| skin, 22.2.16 | plist, 22.1.9 |
| command line display, 22.2.32 | pmf score, 22.5.6 |
| convert chemical from pdb, 22.4.1 | pockets, 22.2.14 |
| covalent bond, 22.4.2 | preserve coordinates, 22.8.6 |
| delete, 22.4.9 | quad buffer, 22.1.7 |
| descriptors, 22.8.15 | receptor selection, 22.5.14 |
| deselect, 22.2.7 | reload dock, 22.5.4 |
| dihedral, 22.2.18 | remove salt, 22.8.14 |
| dock charge groups, 22.5.22 | select, 22.2.6 |
| probe, 22.5.13 | renumber, 22.4.4 |
| racemic, 22.5.21 | residue number selection, 22.2.36 |
| repeat, 22.5.5 | rmsd, 22.4.7 |
| working directory, 22.5.23 | rmsdtips, 22.4.8 |
| docking, 22.5 | rocking active ppt, 22.3.1 |
| docktime, 22.5.11 | speed, 22.3.2 |
| dollar, 22.10.3 | rotate chemical, 22.8.13 |
| download install, 22.1.1 | scale display, 22.2.38 |
| druglikeness, 22.8.9 | scanScoreExternal, 22.5.17 |
| energy, 22.5.1 | scanScoreExternal2, 22.5.18 |
| error admin, 22.1.10 | score, 22.5.8 |
| extract ligand, 22.8.8 | script, 22.10 |
| flexible dock, 22.5.15 | sequence secondary structure, 22.6.1 |
| ring docking, 22.5.20 | alignments, 22.6 |
| font size, 22.2.1 | smiles, 22.8.11 |
| foreground table, 22.10.4 | solvent accessible surface table, 22.4.19 |
| gl failure, 22.1.11 | ss, 22.4.17 |
| gui, 22.2 | structure, 22.4 |
| guided dock, 22.5.3 | superimpose, 22.4.6 |
| thoroughness, 22.5.12 | formal, 5.1.3, 22.4.21 |
| transparent ribbon, 22.2.3 | charge, 6.1.9, 10.15, 10.18 |
| truncate mesh, 22.2.15 | format, 17.1.2, 17.1.40 |
| view stack, 22.9.8 | formula, 10.4.9, 10.11 |
| weak hydrogen bonds, 22.4.20 | fragment, 10.3.35, 10.36.1, 13, 13.2, 16.11 |
| write pdb, 22.4.3 | linking, 16.11 |
| faqcontour, 22.2.28 | screening, 13.2 |
| faqhbondstrength, 22.2.29 | fragments, 10.8 |
| faqmaps, 22.2.27 | frame, 8.3.3 |
| faqoda, 22.2.26 | free energy, 9.12, 9.13 |
| faqstereo, 22.1.14 | radical, 10.4.7 |
| fasta, 8.1.5 | wilson regression analysis, 10.36.2 |
| fbdd, 13.2 | freeze column, 17.1.30 |
| fft, 12.7.1 | row, 17.1.31 |
| protein protein docking, 12.7.1 | frequency, 10.3.35 |
| file, 3.6.1.3 | front, 6.3.10, 6.13.1 |
| close, 3.6.1.13 | full model, 9.1.3 |
| compatible, 3.6.1.10 | builder, 9.1.3 |
| export, 3.6.1.12 | multiple chain, 9.1.3.1 |
| high quality image, 6.15.1 | refinement, 9.1.3 |
| load, 3.6.1.7 | scene antialias, 3.6.3.10 |
| menu, 3.6.1 | screen, 3.6.3.8 |
| password, 3.6.1.11 | function, 17.1.26, 17.1.32 |
| preferences, 3.6.1.16 | functional.groups, 10.13 |
| quick image, 3.6.1.14 | fuzzy, 12.3 |
| icb, 4.1.10 | gap, 9.3 |
| recent, 3.6.1.17 | general preferences, 4.7.5 |
| bak, 3.6.2.11 | generalselecttools, 4.6.1 |
| filter, 18.2, 22.2.4 | generator, 5.3.3, 10.23 |
| selection, 4.6.8 | getting started, 4 |
| filters, 13.1.5 | giga search, 10.5.5 |
| find chemical, 10.3.32 | enamine, 10.5.5 |
| fingerprint, 11, 11.3, 21.13, 22.8.1, 22.9.5 | sized library, 13.5 |
| method, 11.3 | ginger, 10.23 |
| fingerprints, 22.8.15 | glasses, 6.6, 22.1.6, 22.1.14 |
| firefox, 22.3 | glutamine proline, 9.20.2 |
| fit, 10.3.34, 12.5, 22.5.15 | google, 3.6.1.7 |
| fitting, 12.5, 17.4.16 | objects, 6.3.7 |
| flexibility, 5.6.4, 12.2.3, 21.12 | 3D, 3.7.6, 6.3.7 |
| flexible, 10.37, 12.2, 12.2.1, 12.2.2, 21.12.1, 22.5.15 | gpcr_model, 21.5.1 |
| APF superposition to template, 10.37.4 | graft loop, 9.4 |
| docking, 16.13 | graphical, 22.2.4 |
| receptor groups, 16.13 | display, 5.1.3.1, 5.1.3.2, 10.7.2, 10.7.3 |
| ring sampling level, 12.1.6 | tutorial, 21.1 |
| flood, 9.20.17 | 2D3D labels, 21.1.4 |
| fog, 3.6.3.5, 6, 6.10.1 | annotation, 21.1.2 |
| font, 4.7, 4.7.7, 5.2.3.1, 6.8.2, 6.8.3, 8.7.7, 8.7.7.1, 10.3.28, 17.1.40, 17.7.4 | color representation, 21.1.1 |
| preferences, 4.7.7 | labels, 21.1.3 |
| size, 8.7, 22.1.16, 22.2.1 | user interface, 22.2 |
| form view, 17.1.5 | graphics, 4.1 |
| controls, 6 | color, 17.4.2 |
| defects, 22.1.12 | source, 17.4.2 |
| effects, 6.10 | style, 17.4.2 |
| panel, 6.2 | title, 17.4.2 |
| preferences, 4.7.3 | historeceptomics, 4.2.10 |
| shadow, 3.6.3.13, 6.10.2 | hitlist, 12.1.12, 12.1.13, 13.1.8, 13.1.9.1, 13.1.9.5, 14.4, 22.5.7 |
| green arrows, 8.7.16, 22.6.2 | cluster apf, 13.1.9.5 |
| lines, 8.2, 22.6.1 | columns, 12.1.13.1 |
| grid, 10.3.3, 10.37, 21.12.1, 22.8.4 | export, 12.1.14 |
| grob, 4.7.5, 5.3.4, 5.3.6, 5.3.7, 6.3 | homology, 4.2.1.2, 4.2.5, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 21.5 |
| group, 10.36.1, 16.6 | model, 9.1, 9.1.1.2 |
| column, 17.1.46 | introduction, 9.1.1 |
| groups, 10.8, 10.11, 10.12 | older versions, 9.1.1.3 |
| guanidinium, 10.15 | hover, 17.4.26 |
| gui, 4.1.1, 4.7.4 | 3D editor, 21.7 |
| menus, 3.6 | add columns, 10.3.4 |
| preferences, 4.7.4 | cluster center, 10.28.2 |
| tabs, 3.7 | color 2D by ph4, 10.5.6.5 |
| guided docking, 12.1.7, 22.5.3 | copy 2D, 10.3.16 |
| h-bond, 5.2.3, 5.2.3.1, 5.2.3.2, 22.2.12 | paste, 10.3.6 |
| halogen, 10.11.2 | decompose, 21.6.9 |
| hardware stereo, 3.6.3.7, 22.1 | duplicate chemicals, 10.3.21 |
| hba, 13.1.10 | edit table, 10.3.17 |
| hbd, 13.1.10 | tree, 10.28.4 |
| hbond, 5.2, 21.3.6, 22.2.29 | excel, 10.3.10 |
| strength, 22.2.29 | extract 3D ph4, 10.5.6.4 |
| header, 4.2.1.6, 17.4.9 | filter, 10.3.12 |
| health, 5.6.3 | find replace, 10.3.13 |
| heatmap, 17.4.7 | mark row, 10.3.14 |
| example, 17.4.7.1 | markush, 21.6.8 |
| helix, 22.2.20 | structure, 21.6.7 |
| help, 2 | merge tables, 10.3.23 |
| videos, 2 | properties, 10.3.19 |
| hetero, 10.3.28 | reactions, 21.6.10 |
| scan, 16.7 | reorder, 10.28.3 |
| hidden block format, 8.7.11 | sdf, 10.3.9 |
| width, 8.7.11 | show hide, 10.3.8 |
| hide, 17.1.39 | sort column, 10.3.5 |
| column, 17.1.28 | standardize, 10.3.18 |
| high, 3.6.1.15 | table hyperlinks, 10.3.15 |
| quality, 3.6.3.11 | print, 10.3.11 |
| highlight new data, 10.3.7.1 | activeicm, 3.3 |
| his, 22.4.15 | create molecular documents, 3.3.3 |
| histidine, 9.20.2, 22.4.15 | slides, 3.3.2 |
| tautomer, 22.4.15 | getting started, 3.3.1 |
| histogram, 13.1.9.2, 17.4, 17.4.1, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.4.22 | ppt, 3.3.4 |
| bins, 17.4.3 | web, 3.3.5 |
| options, 17.4.2 | chemical clusering, 10.28.1 |
| bin.size, 17.4.2 | icm browser convert display pocket, 3.1.4 |
| bins, 17.4.3 | distances angles, 3.1.9 |
| graphical display, 3.1.2 | tutorials, 3.4 |
| effects, 3.1.5 | hanging, 22.1.13 |
| images, 3.1.7 | object, 5.1, 21.3.2 |
| labels annotation, 3.1.6 | script, 17.1.40 |
| pro crystallographic tools, 3.2.6 | icm-crash, 22.1.13 |
| get started, 3.2.1 | icmFastAlignment, 8.4 |
| graphics, 3.2.2 | icmPocketFinder, 5.6.6, 22.2.14, 22.5.10 |
| plots, 3.2.8 | icmdb, 19 |
| sequence analysis, 3.2.7 | icmjs, 7.16 |
| structure analysis, 3.2.3 | icmpocketfinder, 21.3.7 |
| superimpose, 3.2.5 | id, 17.1.27 |
| surfaces, 3.2.4 | identity, 4.2.1.2 |
| selections, 3.1.3 | image, 4.1.14, 4.7, 4.7.5, 6.15.3, 7.6.3, 10.2, 10.2.6, 17.4.21, 22.1.20 |
| superimpose, 3.1.8 | advanced, 6.15.3 |
| search, 4.2 | distortion, 22.1.20 |
| use gui, 4.1 | preferences, 4.7.6 |
| hrydrogen.bond, 22.2.29 | problem, 22.1.20 |
| html, 3.6.1.12, 4.3, 7.6.1, 7.6.7, 22.3 | multiple, 3.6.1.7 |
| html-doc font size, 22.2.1 | quality, 3.6.3.11 |
| hybridization, 10.4.3, 10.5.1 | quick, 3.6.1.14, 6.15.2 |
| hydrogen, 5.2.3, 5.2.3.1, 5.2.3.2, 6.1.8, 10.4.3, 10.5.1, 21.3.6, 22.2.12, 22.8.7, 22.8.10 | images, 6.15 |
| atom display, 16.3.3 | impose, 12.2.2 |
| bond, 5.2, 6.1.8, 10.6, 13.1.9.3, 21.3.6 | improve model, 11.1.3 |
| acceptors, 22.8.17 | in-a-window, 22.1.7 |
| donor, 10.38.1 | inchi, 10.20.3 |
| label edit, 5.2.3.1 | increment, 17.1.27 |
| move, 5.2.3.2 | id, 17.1.27 |
| bonds, 5.2.4, 12.1.1.7 | index, 22.9.6 |
| bond, 10.4.9, 22.4.20 | models, 15.1.2 |
| hydrogens, 10.3.28 | induced, 22.5.15 |
| remove, 10.3.18 | fit, 12.2, 12.2.1, 12.2.3, 16.13, 21.12, 21.12.1 |
| hyperlink, 7.6.1, 7.6.2, 17.1.40 | insert, 7.6.4 |
| hyrophobic, 10.38.1 | column, 17.1.26 |
| iSee, 3.6.1.5, 3.6.1.12, 4.1.10, 6.15.3, 21.2, 22.2.30, 22.2.31, 22.3.3 | image, 7.6.3, 17.1.34 |
| icb, 4.4.2, 4.5, 22.2.30, 22.3.3 | table, 17.1.34 |
| icm, 22.3.3 | row, 17.1.33 |
| chemist howto chemical search, 3.4.3 | script, 7.6.4 |
| cluster, 3.4.5 | install, 1, 10.10.1, 19.1, 22.1.3, 22.1.4 |
| combi library, 3.4.7 | installation, 22.1 |
| ph4, 3.4.4 | interaction, 5.5.3, 10.6, 22.2.12 |
| plots, 3.4.8 | fingerprint, 13.1.9.6 |
| sketch, 3.4.1 | fingerprints, 13.1.9.6 |
| spreadsheets, 3.4.2 | lists, 13.1.10 |
| stereoisomers tautomers, 3.4.6 | restraint, 12.1.7 |
| pro 3D ligand editor, 3.5.1 | restraints, 12.1.7 |
| chem3D, 3.5.2 | interactions, 16.3.12, 22.5.2 |
| chemsuper, 3.5.4 | interactive, 12.1.9, 21.2 |
| energy, 3.5.3 | loaded ligand, 12.1.9.2 |
| qsar, 3.5.5 | loop, 9.1.4.2 |
| tutorials, 3.5 | modeling, 9.1.4 |
| modeling, 9.1.4 | variables, 6.8.5, 22.2.18 |
| interface prediction, 21.10 | labeling, 6.8.1 |
| internal hydrogen bonds, 12.1.1.7 | labels, 6.8, 10.3.28 |
| internet explorer, 22.3 | distances, 6.8.10 |
| interrupt, 6.10.7.3 | tab, 3.7.3 |
| animation, 6.10.7.3 | landscape, 4.7.6 |
| introduction, 1 | large chemical space, 21.6.4 |
| invert selection, 17.1.23 | font, 22.1.16 |
| invisible residue label, 22.1.12 | size, 22.1.9 |
| iqr, 17.4.23 | sdf, 10.1.2 |
| isee, 7.6.5 | layer, 6.14 |
| isis, 10.4.18 | layers, 6.14 |
| isostere, 13.4 | learn, 10.21, 10.22, 11, 11.1, 17.6, 22.8.12 |
| isotope, 10.4.3, 10.5.1 | learning, 11 |
| iupac, 10.2.7, 10.3.20 | theory, 11.5 |
| javascript, 7.16 | least.squares, 17.4.16 |
| job, 22.5.19 | library, 10.35.4 |
| join, 10.32 | reaction, 21.6.10 |
| jpg, 6.15 | license, 22.1.4 |
| means, 17.7.1 | ligand, 5.2.2, 10.6, 10.27, 10.27.1, 10.27.2, 12.1.1, 12.2, 12.7.6, 12.7.7, 16.3.12, 16.3.13, 16.5.8, 16.10, 16.11, 22.4.5, 22.4.11, 22.5.2, 22.5.9, 22.8.8 |
| kcc, 15.3.1, 15.5 | based screen, 10.38.3, 13.3 |
| keep carboxyls neutral, 12.1.6 | best replace, 16.6 |
| kernel regression, 15.3.1 | binding, 9.15 |
| chemical, 10.4.10 | code, 4.2.1.3, 4.2.7 |
| keyboard mouse, 6.11 | considerations, 12.1.1.2 |
| keystokes in chem-edit, 10.4.10 | editor, 16, 16.10, 16.10.1, 16.16, 16.17 |
| kmz, 3.7.6, 6.3.7 | bioisostere, 16.8 |
| knime, 20 | covalent docking, 16.16 |
| label, 4.7.7, 17.7.4, 22.2.17 | mrc, 16.15 |
| atoms, 6.8.2 | preferences, 3.6.2.18 |
| color, 6.8.7 | energetics, 10.27 |
| move, 6.8.4 | conformational entropy, 10.27.1 |
| residues, 6.8.3 | strain, 10.27.2 |
| sites, 6.8.6 | pocket, 5.2.4, 22.4.11 |
| variables, 6.8.5 | surface, 16.3.2 |
| 2D, 3.7.3 | receptor contacts, 16.3.12 |
| 3D, 3.7.3, 6.8.1 | display, 5.2 |
| atom, 6.8.1 | interaction, 10.6 |
| atoms, 6.8.2 | strain, 16.3.10 |
| color, 6.8.7 | surface, 5.2.2 |
| custom, 6.8.8 | tether, 16.12 |
| delete, 6.8.1, 6.8.9 | ligand-based, 13, 13.3 |
| distance, 6.8.10 | convert, 9.20.1 |
| drag, 3.6.3.16 | editor, 16, 16.1 |
| move, 3.6.3.16, 6.8.4 | binding.re-dock ligand, 16.9 |
| residue, 6.8.1 | display, 16.3 |
| residues, 6.8.3 | edit, 16.5 |
| site, 6.8.1 | energy, 16.3 |
| sites, 6.8.6 | hydrogen.bond, 16.3 |
| variable, 6.8.1 | pocket, 16.3 |
| restraint, 16.12 | analysis, 9.6 |
| surface, 16.3 | design, 9.3 |
| tether, 16.12 | find pdb segments, 9.6 |
| optimization, 21.11.3 | model, 9.2, 9.3, 21.5.2 |
| pocket, 4.1.8 | tutorial, 21.5.2 |
| receptor.contact, 5.5.3 | modeling, 9.1.4.2, 9.5, 9.6, 9.20.10 |
| ligand_pocket_interactions, 5.2.4 | preferred residues, 9.5 |
| ligedit distance restraint, 16.12.2 | model, 9.20.9 |
| tab, 3.7.5 | sample, 9.20.9 |
| tether, 16.12.1 | energy water, 9.20.17 |
| light, 3.7.2 | mac, 10.10.1, 22.1.9, 22.1.16 |
| tab, 3.7.2 | font, 22.1.16 |
| lighting, 6.3.9.4, 6.5 | size, 22.1.16 |
| likeness, 10.11, 22.8.9 | machine learning, 21.13 |
| line, 4.7.5, 17.7.4, 22.2.12 | macrocycles, 9.19 |
| lineWidth, 4.7.3 | macros, 7.14 |
| link, 8.3.9 | macroshape, 3.6.3.22, 6.3, 6.3.6 |
| structure to alignment, 21.4 | make, 6.10.7.1, 17.1.1 |
| linker, 12.8 | alignment, 8.6.1 |
| links, 4.6.20 | animation, 6.10.7.1 |
| linux, 10.10.1 | apf docking sar model, 15.6 |
| lipinski rule, 10.34 | complex, 13.1.9.4, 16.20 |
| list, 4.6.18 | flat, 22.8.13 |
| lmhostid, 22.1.18 | molecular document, 7.6 |
| load, 3.6.1.3, 3.6.1.17, 5.3.4, 5.3.6, 5.3.7, 8.1 | molt, 18.1 |
| example alignment, 8.3.14 | receptor maps, 12.1.5 |
| nmr model, 4.2.1.4 | selection, 4.6 |
| protein structure, 5.1.1 | bond, 22.4.2 |
| sequence, 8.1 | disulfide, 9.9, 22.4.17 |
| extract pdb, 8.1.3 | molecule, 3.6.1.1 |
| from file, 8.1.4 | object, 3.6.1.1 |
| paste, 8.1.2 | making molecular slides, 7.1 |
| swissprot, 8.1.1 | html, 7.6 |
| libraries, 9.20.6 | manual change torsion, 16.5.4 |
| local, 22.2.24, 22.2.25 | map, 4.7.7, 5.3.4, 5.3.6, 5.3.7 |
| databases, 18 | cel, 5.3.5 |
| database.browse, 18.2 | maps, 12.1.4, 12.1.5, 12.7.8, 21.12.1, 22.2.27, 22.2.28, 22.5.9 |
| edit, 18.3 | mark, 17.1.45 |
| query, 18.4 | row, 17.1.45 |
| row, 18.3 | color, 17.4.14 |
| localpdb, 22.2.24 | shape, 17.4.13 |
| localseq, 22.2.25 | size, 17.4.13 |
| lock, 6.3.10, 6.13.1, 10.3.31 | markush, 10.28.7, 10.35.1, 10.35.3, 10.36.1, 21.11.3 |
| log, 17.4.6, 17.4.11 | docking, 21.11.3 |
| logD, 10.11.6 | library, 21.6.8 |
| logP, 10.4.9, 10.11 | mass, 22.4.22 |
| logS, 10.4.9, 10.11 | matched pair, 10.36.6, 21.6.11 |
| logarithmic, 17.4.11 | analysis, 10.36.6 |
| logout, 3.6.1.19 | materials, 3.7.6 |
| loop, 9.2, 9.4, 22.2.20 | max, 17.7.1 |
| maximum common substructure, 10.28.6, 10.30, 10.30.1 | modification history, 16.5.6 |
| dendrogram, 10.30.1 | modify, 9.11 |
| mcs, 10.28.6, 10.30.1 | amino acid, 9.11 |
| rgroup decomposition, 10.28.7 | group, 9.10 |
| mean, 17.4.6, 17.4.23, 22.4.7 | mol, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13, 21.11.2 |
| measure distance, 22.8.16 | mol2, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 |
| to ring, 22.8.16 | molcart, 10.10, 10.10.1, 10.10.2, 10.10.3, 10.10.4, 10.10.5, 18, 19, 22.1.3, 22.8, 22.8.1, 22.9.3, 22.9.4, 22.9.5, 22.9.6 |
| median, 17.4.6, 17.4.23 | add database, 10.10.3 |
| membrane, 14.3 | administration, 10.10.5 |
| memory, 10.1.2 | connect, 22.9.2 |
| menu, 7.6.5 | download dbs, 22.9.3 |
| chemistry, 3.6.14 | hostid, 22.9.1 |
| docking, 3.6.15 | installation, 10.10.1 |
| homology, 3.6.13 | license, 22.1.4 |
| molmechanics, 3.6.16 | search, 10.10.4 |
| tools chemical search, 3.6.11 | start, 10.10.2 |
| molecular editor, 3.6.12 | connect, 22.9.2 |
| windows, 3.6.17 | hostid, 22.9.1 |
| merge, 10.32, 22.4.5 | license, 22.9.1 |
| two sets, 10.32 | molclart, 22.1.4 |
| mesh, 5.2.1, 5.2.2, 5.3.4, 5.3.6, 5.3.7, 6.3, 6.3.9.1, 6.3.9.2, 6.3.9.4, 6.3.10, 6.3.11, 6.3.12, 6.13.1 | molecular, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.23, 22.8.7, 22.8.10 |
| clip, 6.3.10 | animations slides, 7 |
| color lighting, 6.3.9.4 | documents, 21.2 |
| options, 6.3.9 | dynamics, 14, 14.1, 14.2, 14.3, 14.4 |
| representation, 6.3.9.3 | membrane, 14.3 |
| save, 6.3.11 | restraints, 14.2 |
| options, 6.3.9 | run, 14.1 |
| meshes, 6.3.2, 6.10.5 | vls, 14.4 |
| surfaces grobs, 6.3 | editor, 22.8.2 |
| tab, 3.7.6 | graphics, 6 |
| metabolic oxidation, 15.7 | matched pairs, 21.6.11 |
| min, 17.7.1 | mechanics, 9.20 |
| minimization, 9.17 | convert, 9.20.1 |
| cartesian, 9.20.8 | design loop, 9.20.10 |
| global, 9.20.8 | edit structure, 9.20.5 |
| local, 9.20.8 | gamess, 9.20.16 |
| minimum specifications, 1 | generate normal mode stack, 9.20.14 |
| mmff, 9.20.6, 10.4.16, 22.2.17, 22.8.5 | his asn, 9.20.2 |
| type, 6.8.2 | ic table, 9.20.13 |
| mmp, 21.6.11 | impose conformation, 9.20.4 |
| mnSolutions, 4.7.10 | minimize, 9.20.8 |
| model, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 9.17, 21.5 | mmff, 9.20.6 |
| domain interaction, 9.17 | regularization, 9.20.3 |
| start, 9.1.1.2 | sample loop, 9.20.9 |
| weight, 11.1.2 | peptide, 9.20.12 |
| modelers view, 9.1.4.1 | protein, 9.20.11 |
| view, 9.1.4.1 | terms, 9.20.19 |
| modeling, 9.20.3 | view stack, 9.20.15 |
| options, 9.1.1.1 | modeling, 9 |
| modeller view, 9.1.4 | table, 10.20.2 |
| molecule, 22.2.8, 22.8.3 | multiple, 12.2.2, 21.12.1 |
| editor, 10.4 | chain, 9.1.2.2, 9.1.3.1 |
| moledit, 10.4.8 | position group scan, 16.7 |
| molmechanics, 22.9.8 | rec, 12.2.2 |
| minimize, 9.20.8 | receptor, 4.2.2, 21.12 |
| mmff, 9.20.6 | docking, 16.15 |
| molscreen, 13, 15 | protein, 22.2.5 |
| custom model panel, 15.4 | mutant, 9.10, 22.4.13, 22.4.14 |
| load models, 15.1.1 | mutate, 9.12, 9.13, 22.4.15 |
| run, 15.1 | residue, 22.4.13 |
| model type, 15.3 | N C, 22.4.14 |
| results, 15.2 | mutation, 9.10, 9.12, 9.13, 9.15, 21.5.3, 21.5.4, 22.4.13, 22.4.14 |
| molskin, 6.3.2 | protein binding, 9.12 |
| molsynth, 10.11.5 | ligand, 9.15 |
| molt, 18, 18.4 | peptide, 9.14 |
| monitor, 22.8.10 | stability, 9.13 |
| monochrome, 10.3.28 | mysql, 19 |
| montecarlo, 22.9.7 | navigate workspace, 4.6.10 |
| mouse, 4.1.3, 6.11, 6.12 | nearest, 22.4.22 |
| mov, 6.16, 6.16.2 | neural network, 12.1.13.1 |
| move, 3.6.3.19, 4.1.11, 4.1.13, 5.2.3.2, 6.3.9.1, 6.3.9.2, 6.12, 6.12.7, 9.17, 22.4.5 | Torsion Profile Neural Network Prediction Engine, 6.12.6.1 |
| column, 17.1.28 | new, 8.1 |
| mesh, 6.3.9.2 | icm session, 3.6.1.2 |
| slide, 7.4.2 | table, 17.1.1 |
| structure, 6.12 | table, 17.1.1 |
| tools, 6 | nmr, 22.4.18 |
| rotate, 6.11 | model, 4.2.1.4 |
| slab, 6.11 | nnc, 15.3.5 |
| translate, 6.11 | nntorsion, 6.12.6.1 |
| z-rotation, 6.11 | nof, 10.11.2 |
| zoom, 6.11 | chemical, 10.11.2 |
| movie, 6.16.1, 22.2.19, 22.9.7 | non-contiguous selection, 4.6.18 |
| montecarlo, 22.9.7 | normal modes, 9.20.14 |
| making, 6.16, 6.16.2 | number of sp3, 10.11.2 |
| open, 6.16, 6.16.2 | numbers, 10.3.28 |
| mpa, 21.6.11 | nvidia, 22.1.2 |
| mpeg, 6.16, 6.16.1, 6.16.2 | obj, 6.7 |
| mpg, 6.16, 6.16.2 | object, 4.1.11, 4.5, 21.3, 22.2.8 |
| mpo, 10.34 | objects, 5.1.2 |
| binary classification, 10.34.2 | in table, 17.3 |
| custom step function, 10.34.1.2 | in.table, 17.3 |
| customized, 10.34.1 | occlusion, 6.3.12, 6.10.5 |
| save, 10.34.1.3 | shading, 6.3.12 |
| special cases, 10.34.1.1 | effect, 6.10.5 |
| mtl, 6.7 | occupancy, 6.1.3, 21.3.10 |
| multi apf super, 10.37.7 | display, 4.2.1.5 |
| panel, 6.2 | oda, 5.6.5, 12.7, 12.7.2, 12.7.3 |
| parameter optimization, 10.34 | older version, 3.6.1.10 |
| template, 9.1.4.3 | omega, 6.8.5, 22.2.18 |
| windows, 6.2 | online databases, 10.5.5 |
| file, 4.4 | 2D, 21.6.6 |
| password, 4.4.1 | 3D, 21.6.5 |
| with password, 3.6.1.4 | clone, 10.5.6.2 |
| movie, 6.16, 6.16.2 | draw2D, 10.5.6.1 |
| password, 3.6.1.4, 4.4.1 | draw3D, 10.5.6.2 |
| optimal, 5.6.5, 12.7, 12.7.2, 12.7.3 | edit, 10.5.6.1, 10.5.6.2 |
| optimize, 9.20.2 | move, 10.5.6.2 |
| oracle, 19 | new, 10.5.6.2 |
| orange, 4.6.5 | search, 10.5.6, 10.5.6.3, 21.6.5, 21.6.6 |
| selection, 4.6.5 | phi, 6.8.5, 22.2.18 |
| origin, 6.8.12, 22.2.10 | phylogenetic, 8.7.8 |
| orthosteric, 5.6.6 | phylogeny, 8.7.8 |
| other selection, 4.6.19 | physics-based score, 12.1.13.1 |
| outside, 22.5.9 | pi, 5.2.5 |
| overlay, 21.3.3, 22.2.5, 22.4.6 | cation, 5.2.5 |
| pH, 10.19, 12.1.1.3 | pi, 5.2.5 |
| package.activeicm, 7.13 | picking, 6 |
| packing, 5.3.1 | picture, 3.6.1.14, 4.1.14, 6.15.2, 7.6.3 |
| pages, 19.7 | tips, 4.1.14 |
| pairwise, 10.37.5, 10.37.6 | chart, 17.4.8 |
| apf score, 10.38 | pipi, 5.2.5 |
| parallelization, 13.1.7 | pka, 10.15 |
| password, 10.10.5 | planar, 5.5.7, 6.8.5, 22.2.18 |
| paste, 10.4.11, 10.4.18, 17.1.35 | angle, 5.5 |
| pca, 17.5 | angle, 6.9.2 |
| pdb, 3.6.1.7, 4.2, 4.2.1.1, 4.2.7, 4.5, 5.1.3, 10.7.1, 21.3, 22.2.24, 22.2.25, 22.4.4 | plane, 6.3.10, 6.13, 6.13.1, 6.14, 22.2.11, 22.2.19, 22.2.21 |
| chem gl, 10.7.3 | faq, 22.2.21 |
| iw, 10.7.2 | plot, 4.7, 4.7.8, 13.1.9.2, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.4.21, 17.4.22, 17.4.23 |
| dormat, 4.5 | R group sar, 10.36.4 |
| file, 22.4.3 | axis, 17.4.11 |
| html, 4.2.1.6 | color, 17.4.14 |
| preparation, 21.3.11 | columns, 17.4.6 |
| search, 4.2.1, 4.2.1.2, 4.2.1.3, 21.3.1 | function, 3.6.9, 3.6.9.1 |
| convert, 9.20.1 | grid, 17.4.15 |
| recent, 3.6.1.18 | header, 17.4.9 |
| search, 3.7.4, 4.1.2 | inline, 17.4.22 |
| pdbsearchfield, 3.6.2.13 | logarithmic, 17.4.12 |
| pdbsearchhomology, 3.6.2.15 | mark, 17.4.13 |
| pdbsearchidentity, 3.6.2.14 | mean median iqr, 17.4.23 |
| pdbsearcsequence, 3.6.2.16 | point label, 17.4.19 |
| peptide, 4.3, 9.14, 9.19, 12.6 | preferences, 4.7.8 |
| docking, 12.6 | groups, 17.4.25 |
| modeling, 9.19 | regression, 17.4.16 |
| percentage similarity, 8.7.15, 21.4.4 | selection, 17.4.18 |
| perspective, 3.6.3.9, 6.10.6 | zoom translate, 17.4.17 |
| ph4, 10.5.6 | axis, 17.4.15 |
| draw 2d, 10.5.6.1 | display, 17.4.15 |
| 3d, 10.5.6.2 | grid, 17.4.15 |
| search, 10.5.6.3 | inline, 17.4.22 |
| pharmacophore, 10.3.35, 10.5.6.5, 21.8.2 | logarithmic, 17.4.12 |
| pmf, 22.5.6 | problem, 22.1.14 |
| png, 3.6.1.14, 6.15, 6.15.2, 7.6.3, 10.2, 10.2.6 | with selection, 22.1.12 |
| pocket, 4.1.8, 5.2, 5.2.1, 5.2.2, 5.6.6, 12.1, 21.3.7, 22.2.14, 22.4.11, 22.5.10 | prodrug, 10.26 |
| conservation, 22.4.12 | profile, 4.2.10, 8.3.8 |
| properties, 5.8 | project, 3.6.1.5, 12.7.4, 19.6, 21.6.4.6 |
| surface, 5.2.1, 13.1.11 | close, 3.6.1.13 |
| peptide, 4.1.8 | rename, 3.6.1.9 |
| properties, 4.1.8 | properties, 6.8.2, 10.11, 10.11.1, 22.8.7 |
| pocketome, 4.2, 4.2.2, 5.8 | property, 10.4.9, 22.8.7, 22.8.8, 22.8.9, 22.8.10 |
| pockets, 5.6.6 | expression, 13.1.9.4 |
| point label, 17.4.19 | monitor, 10.4.9 |
| portait, 4.7.6 | protac, 12.8 |
| post edit ligand, 16.5.8 | protect, 7.6.8 |
| screen, 13.1.9 | protein, 5.4.6, 8, 9.14, 22.4.5 |
| postscript, 4.7.6 | chain, 9.3 |
| potential mean force, 13.1.4 | health, 5.6.3 |
| ppbatch, 12.7.9 | model, 9.18 |
| ppepitope, 12.7.7 | protein docking, 21.10 |
| ppmaps, 12.7.8 | tutorial, 21.10 |
| pprefine, 12.7.11 | sculpting, 9.17 |
| ppresults, 12.7.10 | sequence, 10.4.17 |
| pproc, 12.7.3 | structure, 5 |
| ppsetligand, 12.7.6 | analysis, 5.5 |
| ppsetproject, 12.7.4 | closed cavities, 5.5.4 |
| ppsetreceptor, 12.7.5 | contact areas, 5.5.3 |
| ppt, 7.12, 7.14, 22.3.3 | distance, 5.5.6 |
| predict, 8.3.2, 10.21, 10.22, 11, 11.2, 17.6, 22.8.9, 22.8.12 | find related chains, 5.5.1 |
| disulfide, 9.16 | finding dihedral angle, 5.5.8 |
| metabolic oxidation, 15.7 | planar angle, 5.5.7 |
| predicting bioassays, 11.2 | rama export, 5.5.10 |
| compound properties, 11.2 | ramachandran plot, 5.5.9 |
| prediction binding, 9.12 | rmsd, 5.5.2 |
| preferences, 4.7, 13.1.5, 22.2.24, 22.2.25 | surface area, 5.5.5 |
| preferred residues, 9.5 | similarity, 5.7 |
| presentation, 7.6.5, 7.7, 7.12 | tutorials, 21.3 |
| presentations, 7 | analysis, 21.3.4 |
| preserve, 22.8.6 | contact area, 21.3.5 |
| press-and-hold to rotate, 10.4.8 | convert, 21.3.2 |
| pretty view, 16.3.6 | hydrogen bond, 21.3.6 |
| primary aliphatic amines, 10.15 | icmpocketfinder, 21.3.7 |
| principal component analysis, 17.5 | search, 21.3.1 |
| regression, 11 | superimpose, 21.3.3 |
| components, 11.5 | superposition, 5.4 |
| print, 6.7, 17.4.20, 17.7.3 | select, 5.4.1 |
| alignment, 8.7.4 | sites by apf, 5.4.6 |
| plot, 17.4.20 | superimpose 3D, 5.4.3 |
| alignment, 8.7.4 | grid, 5.4.5 |
| printer.resolution, 4.7.6 | multiple proteins, 5.4.4 |
| pro-drug, 10.26 | protein-protein, 5.6.5, 12.7, 12.7.1, 12.7.2, 12.7.3, 12.7.4, 12.7.5, 12.7.6, 12.7.8, 12.7.9, 12.7.10, 21.10 |
| probe, 12.1.4, 22.5.13 | docking refinement, 12.7.11 |
| convert, 9.20.1 | rainbow, 4.7.5, 6.8.16, 10.3.35, 22.2.38 |
| protonated, 22.4.15 | ramachandran plot, 5.5, 5.5.10 |
| protonation, 10.19, 12.1.1.6 | random forest, 11, 21.13 |
| state, 12.1.1.6 | range, 6.10.7.2 |
| protonation_ph, 10.19 | rapid isostere replacement, 13.4 |
| protonation_ph_charge, 10.19.2 | ratio.selection, 4.7.5 |
| protonation_ph_concentration, 10.19.1 | dock ligand, 16.9 |
| protprot, 12.7 | reactions, 10.8, 10.35.5 |
| proximity, 6.3.3, 6.3.4 | reactive cysteine, 5.6.2 |
| psa, 10.4.9, 10.11.7 | reactivity, 10.11.3 |
| psi, 6.8.5, 22.2.18 | read, 3.6.1.3, 3.6.1.17, 4.4, 8.1, 10.3.1 |
| pubchem, 10.1 | chemical, 10.1 |
| publication quality images, 6.3.2 | spreadsheet, 10.3.1 |
| pubmed, 4.2.1.7 | table, 17.1.2 |
| purple box, 3.6.3.23, 12.1.4, 16.9.1 | pdb, 4.1.2 |
| qs hydrogen bond, 5.2.3 | table, 17 |
| pdb chem gl, 5.1.3.2 | reagent, 10.35.5 |
| iw, 5.1.3.1 | rear, 6.3.10, 6.13.1 |
| qsar, 10.21, 10.22, 11.1, 21.13 | recent files, 3.6.1.17 |
| learn predict, 10.21 | pdb codes, 3.6.1.18 |
| predict, 10.22 | receptor, 5.2.1, 5.2.2, 10.6, 12.1.1, 12.2.2, 12.7.5, 12.7.7, 16.3.12, 21.12.1, 22.5.2, 22.5.14, 22.5.15 |
| quad buffer stereo, 22.1 | considerations, 12.1.1.1 |
| buffer, 22.1.7 | flexibility, 16.15 |
| quality, 3.6.1.15, 4.7.5 | pocket, 16.3.1 |
| query, 9.1.2, 19, 19.3, 22.8.1, 22.9.5, 22.9.6 | surface, 16.3.1, 16.3.2 |
| molt, 18.4 | flexibility, 21.12.2 |
| processing, 10.5.3 | recover, 3.6.2.11 |
| setup, 10.5.1 | cylinders, 8.7.16, 22.6.2 |
| quick, 4.1.14 | lines, 8.2, 22.6.1 |
| image, 6.15.2 | redo, 3.6.2.10, 10.4.11, 16.5.5 |
| model multiple chain, 9.1.2.2 | refine, 9.7, 9.8 |
| single chain, 9.1.2.1 | loops, 9.1.3 |
| start move structure, 4.1.3 | side chain, 9.8 |
| read pdb, 4.1.2 | sidechains, 9.1.3 |
| representation, 4.1.6 | refinement, 12.2.4 |
| selection, 4.1.5 | region, 12.7.7 |
| level, 4.6.3 | regression, 10.36.2, 11.1, 11.5, 17.4.16, 21.13 |
| what is selected, 4.6.4 | regul, 9.7 |
| display.distance, 6.9.1 | regularization, 9.7, 9.20.3 |
| start color, 4.1.7 | relationship, 11, 17.6 |
| quit, 3.6.1.19 | covalent geometry, 12.1.6 |
| group, 10.28.7, 10.35.4 | relaxed ligand, 16.3.9 |
| table, 10.35.2 | reload, 12.1.16, 22.5.4 |
| groups, 10.35.2 | dock results, 12.1.16 |
| r-group, 10.28.7, 10.35.2 | remove, 22.2.6, 22.2.7, 22.2.10 |
| decomposition, 10.28.7 | salt, 22.8.14 |
| enumeration, 10.28.7 | explixit.hydrogens, 10.12 |
| r-groups, 17.4.25 | salt, 10.12 |
| racemic, 10.3.28, 10.20.5, 22.5.21 | rename, 17.1.25 |
| radar, 17.4.6 | column, 17.1.25 |
| renumber, 22.4.4 | stacking, 5.2.5 |
| reorder column, 17.1.29 | rings, 10.3.28, 10.23, 10.37 |
| replace chemical, 10.3.32 | rmsd, 5.5, 5.5.2, 22.4.7, 22.4.8 |
| replacement, 16.6 | rock, 3.6.3.15, 6.10.7, 6.10.7.1, 7 |
| group, 16.8 | speed, 6.10.7.2 |
| report, 19.3 | root, 22.4.7 |
| representation, 3.6.3.19 | mean square deviation, 5.5.2 |
| residue, 4.7.7, 22.2.8, 22.4.15, 22.4.22 | rotate, 3.6.3.15, 4.1.3, 6, 6.10.7, 6.10.7.1, 6.12, 6.12.1, 6.12.2, 7, 10.3.34, 22.8.13 |
| alternative orientation, 21.3.11 | chemical, 10.3.34 |
| content, 8.3.1 | torsion, 6.12.6.1 |
| number selection, 22.2.36 | when pasting, 10.4.8 |
| range, 4.6.18 | easy, 3.6.3.12 |
| content, 3.6.4, 8.3, 8.3.1 | speed, 6.10.7.2 |
| mutate, 22.4.13, 22.4.14 | rotating fragment in editor, 10.4.8 |
| residues, 5.2.1, 5.2.2, 22.2.14 | rotation, 6.12.1 |
| resize, 6.3.9.1, 6.15.3 | rough surface, 22.2.37 |
| mesh, 6.3.9.1 | row, 17, 17.1.22, 17.1.35, 17.1.45 |
| resolution, 4.2.1.3 | flag, 17.1.13 |
| restore, 3.6.2.11, 6.3.10, 6.13.1 | height, 17.1.7, 22.2.39 |
| default, 22.1.9 | mark, 17.1.13 |
| recent backup, 3.6.2.11 | hide, 10.3.8 |
| restrained docking, 12.1.7 | show, 10.3.8 |
| restraint, 16.12.1, 16.12.2 | ruler, 6.8.16 |
| restraints, 14.2 | molscreen, 15.1.3 |
| results, 12.7.10 | rundock, 22.5.16 |
| stack, 12.1.12.2 | rxn, 10.4.13 |
| retrieve columns, 22.5.24 | safari, 22.3 |
| from original database, 22.5.24 | sali, 10.36.5 |
| review and adjust binding site, 12.1.4 | bridge, 21.3.6 |
| rgroup, 10.35.4 | salts, 10.3.18 |
| ribbon, 3.7.1, 4.7.9, 6.1.3, 22.2.23, 22.2.34 | sample, 9.18, 10.37 |
| as a mesh object, 22.2.3 | double bond cis trans, 12.1.6 |
| faq, 22.2.23 | peptide, 9.19, 9.20.12 |
| preferences, 4.7.9 | protein, 9.18, 9.20.11 |
| style, 4.7.9 | racemic centers, 12.1.6 |
| breaks, 6.1.3 | sar, 10.28.7, 10.36, 17.4.25 |
| cylinders, 6.1.3 | analysis, 10.36 |
| smooth, 6.1.3 | table, 10.36.3 |
| worm, 6.1.3 | save, 4.5, 6.3.11, 6.10.7.4, 8.1.5, 10.2.3, 17.4.21, 17.7.3, 22.2.33 |
| ribbonColorStyle, 4.7.9 | SMILES, 10.4.15 |
| ride, 13.4 | alignment, 8.7.3 |
| gpu benchmark, 13.4.1.2 | PDB, 4.5 |
| server setup, 13.4.1.1 | pdb, 4.5 |
| setup, 13.4.1 | chemical mol, 10.4.13 |
| ridge, 13.5 | spreadsheet workspace, 10.2.1 |
| right, 4.1.12 | to chemical spreadsheet, 10.4.14 |
| click, 4.1.12 | docked ligand, 16.18 |
| rigid, 10.37 | file, 4.5 |
| substructure superposition to template, 10.37.2 | hits, 16.5.7 |
| ring, 5.2.5, 10.4.3, 10.4.6, 10.5.1 | image plot, 17.4.21 |
| object, 4.1.9 | chemical, 4.2.1 |
| pdb, 4.5 | ligand code, 4.2.7 |
| project icb, 4.1.10 | pocketome, 4.2.2 |
| sequence, 8.1.5 | pubchem, 4.2.9 |
| slide, 7.4 | surechembl, 4.2.4 |
| smiles string, 10.4.15 | tab field, 4.2.1.3 |
| table, 17.1.21 | pdb chemical, 4.2.1.1 |
| spreadsheet, 16.5.7 | sequence, 4.2.1.2 |
| tree, 17.7.3 | tautomer, 10.5.3 |
| sdf, 10.4.14 | uniprot, 4.2.6 |
| image, 3.6.1.15, 4.1.14 | in.workspace, 3.6.2.4 |
| object, 4.1.9 | secondary aliphatic amines, 10.15 |
| password, 3.6.1.11 | structure, 5.6.1, 22.2.20 |
| picture, 3.6.1.15 | structure, 3.6.4, 6.1.3, 8.3, 8.3.2 |
| project, 3.6.1.8, 3.6.1.9, 3.6.1.10, 4.1.10 | select, 4.6.12, 4.6.13, 17, 17.1.45, 22.4.22 |
| table.view, 17.1.8 | a tree branch, 17.7.2 |
| saving, 3.6.1.8 | all, 4.6.14 |
| project, 3.6.1.8 | amino acid, 4.6.13 |
| scaffold, 10.14 | duplicates, 10.33 |
| hopping, 16.8 | molecule, 4.6.12 |
| scale, 4.7.5, 22.2.38 | neighbors, 4.6.15 |
| scan, 9.20.7, 12.1.12.1 | graphic, 4.6.16 |
| hits, 12.1.12.1 | object, 4.6.11 |
| group, 16.7 | residue, 4.6.13, 4.6.18 |
| scan_pockets, 5.8 | by number, 4.6.18 |
| scarab, 19 | number, 4.6.18 |
| add user, 19.5 | tree, 17.7.2 |
| browse export data, 19.4 | atom, 4.1.5, 4.6.3 |
| installation, 19.1 | graphical, 4.1.5, 4.6.3 |
| new project, 19.6 | object, 4.1.5, 4.6.3 |
| pages, 19.7 | purple.box, 3.6.3.23 |
| query, 19.3 | residue, 4.1.5, 4.6.3 |
| upload data, 19.2 | workspace, 4.1.5, 4.6.3 |
| scare, 12.2.4 | selectall, 3.6.2.3 |
| scatter, 13.1.9.2 | selecting.neighbors, 4.6.16 |
| score, 12.1.13.1, 13.1.8, 16.4, 21.8.3, 21.8.5, 22.5.7, 22.5.8, 22.5.18 | selection, 4.6.4, 4.6.5, 4.6.21, 6.3.4, 10.4.11, 17.4.18, 17.7.2, 17.7.4, 22.2.4, 22.2.6, 22.2.7, 22.2.8, 22.2.13, 22.2.32, 22.4.9, 22.4.10, 22.4.22, 22.5.14 |
| threshold, 13.1.4 | clear, 3.6.2.7 |
| screen, 10.38, 21.8.4, 21.9, 21.11.1 | neighbors, 3.6.2.8 |
| screening, 13.1, 13.1.1, 13.1.2, 13.5, 14.4, 21.12 | alignment, 4.6.19 |
| screenshot, 6.16, 6.16.2 | all, 3.6.2.3 |
| movie, 6.16.2 | alter, 4.6.7 |
| script, 4.3, 7.6.4, 7.6.5, 22.4.19, 22.10, 22.10.1, 22.10.2, 22.10.3 | atom, 3.6.2.5 |
| sculpting, 9.17 | basic, 4.6.2 |
| sdf, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3.35, 10.10, 10.10.3, 10.20.1, 16.10, 18.1, 19.2, 21.11.2, 22.9.3, 22.9.4 | change, 4.6.7 |
| search, 5.7, 10.10, 10.10.4, 18.2, 19.3, 22.9.6 | clear, 3.6.2.7 |
| chembl, 4.2.3 | column, 17.1.23 |
| drugbank, 4.2.8 | filter, 3.6.2.5, 4.6.8 |
| filter, 10.5.2 | graphical, 4.6.16 |
| in workspace, 3.6.2.4 | invert, 3.6.2.6, 17.1.23 |
| pdb, 4.2.1 | level, 3.6.3.3 |
| near atoms, 3.6.2.8 | chirality, 9.20.5 |
| neighbors, 3.6.2.5, 3.6.2.8, 4.6.15, 4.6.17 | disulfide, 9.9, 22.4.17 |
| object, 4.6.11 | bond, 9.20.5 |
| other, 4.6.19 | formal charge, 9.20.5 |
| properties, 3.6.2.5 | tether, 9.20.5 |
| range, 17.1.23 | types, 9.20.6 |
| residue, 3.6.2.5 | setAPFparams, 22.8.12 |
| row, 17.1.23 | setup, 12.7.6 |
| sphere, 4.6.15 | ligand receptor, 16.1 |
| spherical, 3.6.2.8 | shade, 8.7.7, 8.7.7.1 |
| superposition, 5.4.1 | alignment, 21.4.4 |
| table, 4.6.19, 17.1.23 | shading, 6.3.12 |
| elements, 17.1.23 | shadow, 6.10.2 |
| tools, 4.6.1, 4.6.2, 4.6.7, 4.6.8 | share model, 11.1.4 |
| whole, 4.6.11 | sheet, 22.2.20 |
| workspace, 4.6.9, 4.6.17 | shell preferences, 4.7.10 |
| selectioninvert, 3.6.2.6 | shift, 6.8.3 |
| selections, 4.6 | shine, 3.7.2, 4.7.5 |
| links, 8.3.9 | shineStyle, 4.7.3 |
| selectneighbors workspace, 4.6.17 | show, 7.3.1, 17.1.39 |
| organized network, 10.30 | hide column, 17.1.39 |
| sequence, 3.6.4, 4.2, 4.2.1.2, 4.2.5, 4.2.6, 4.3, 8, 8.1, 8.1.5, 8.2, 8.3, 8.3.7, 8.6.1, 8.6.5, 9.1.2, 10.4.17, 21.3, 21.4, 21.4.4, 22.4.12, 22.6, 22.6.1 | side, 10.3.29 |
| analysis, 8.3 | by side, 10.3.29 |
| editor, 8.5 | error, 22.1.19 |
| identity, 8.7.15 | stereo, 3.6.3.6 |
| pattern, 4.2.1.2 | chain refinement, 16.14 |
| reordering, 8.7.8 | chains, 9.8 |
| secondary structure, 8.2, 22.6.1 | side-by-side, 22.1.19 |
| similarity, 8.7.15 | side-chain sampling, 12.7.11 |
| sites, 8.5 | side-chains, 12.2.1 |
| structure, 8.3.6 | sigmaLevel, 5.3.6, 5.3.7 |
| type, 8.3.4 | similarity, 10.31 |
| DNA, 8.3.4 | simulation, 14, 14.1, 14.2, 14.3, 14.4, 22.9.8 |
| alignment, 8.3.5, 8.6.2, 8.6.6 | length, 22.5.12 |
| amino acid, 8.3.4 | simulations, 22.7 |
| nucleotide, 8.3.4 | single, 10.4.10 |
| protein, 8.3.4 | chain, 9.1.2.1 |
| search, 8.4 | singlet, 10.4.7 |
| structure.alignment, 8.3.6, 8.6.3 | sites, 5.4.6 |
| sequences, 8, 22.2.25 | size, 5.2.3.1 |
| unique, 8.3.13 | sketch accents, 6.10.3 |
| extract, 8.3.13 | markush, 10.35.1 |
| unique, 8.3.13 | reaction, 12.4.1 |
| server, 13.1.7.2 | smiles, 10.4.12 |
| error, 22.1.17 | accents, 3.6.3.14, 6.10.3 |
| set, 10.3.31, 22.4.21 | skin, 3.7.1, 6.1.4, 22.2.16 |
| formal charges, 10.15 | slab, 6.3.10, 6.13.1 |
| server, 22.1.17 | slice, 6.13 |
| bond type, 9.20.5 | slide, 6.10.7.4, 7.2, 7.3.1, 7.6.1, 22.2.31 |
| charges, 9.20.6 | effects, 7.5 |
| file, 7.2 | stop, 6.10.7.3 |
| navigation, 7.3.2 | store, 3.6.3.19, 6.10.7.4, 22.2.22 |
| show, 7.3 | current view, 3.6.3.19 |
| blend, 7.5 | faq, 22.2.22 |
| edit, 7.4.1 | strain, 5.6.3, 6.12.6.1, 10.17, 10.27, 10.27.2, 12.1.1.8, 12.1.13.1, 16.4 |
| effect, 7.5 | strip, 22.4.9 |
| smooth, 7.5 | structure, 5.3.3, 11, 17.6, 21.3, 22.4 |
| transition, 7.5 | analysis, 21.3.4 |
| slides, 6.16.1, 7, 7.1, 7.3, 22.2.30 | ensemble, 9.20.14 |
| smiles, 10.4.9, 10.11, 10.20, 10.20.3, 10.20.4 | representation, 6.1 |
| smooth, 6.3.9.3 | smiles, 10.20.4 |
| surface, 22.2.37 | structure-based, 13 |
| solid, 6.3.9.3 | structures, 10, 10.1 |
| solvent.accessible.area, 22.4.19 | style, 4.7.5 |
| sort hitlist, 13.1.9.1 | substituent, 10.9.1, 10.9.2, 10.35.2, 16.5.2 |
| table, 3.6.10.4 | substructure, 10.10.4, 10.13, 10.37.1, 10.37.2, 12.3, 22.8.1, 22.9.5 |
| sorting, 13.1.9.1 | template, 16.12.3 |
| compounds, 17.7 | alerts, 10.13 |
| sp3, 10.11.2 | sulfur, 9.9 |
| spec, 3.7.2 | superimpose, 3.6.8, 5.4.2, 5.4.6, 10.37.4, 21.3.3, 22.2.5, 22.4.6, 22.4.7, 22.4.8 |
| specifications, 22.1.5 | 3D, 5.4.3 |
| specs, 1 | Calpha, 5.4.3 |
| faq, 22.1.5 | arrange.grid, 5.4.5 |
| speed, 6.10.7.2 | backbone, 5.4.3 |
| sphere, 22.4.11 | heavy atoms, 5.4.3 |
| spherical, 22.4.9, 22.4.12 | multiple, 5.4.4 |
| split, 10.36.1 | superposition, 10.37, 10.37.1, 10.37.2, 10.37.5, 10.37.6, 21.3.3, 21.8.1 |
| spreadsheet, 10.20.2 | surface, 3.7.1, 4.7.5, 5.2.1, 5.2.2, 6.1.6, 6.3, 6.3.3, 6.3.4, 22.2.16, 22.2.37, 22.4.19 |
| square, 22.4.7 | area, 5.5 |
| stability, 9.13, 21.5.3, 21.5.4 | area, 5.5.5 |
| stack, 9.18, 9.20.18, 12.1.12, 12.7.10, 22.9.8 | surfaces, 5.2, 6.3.1, 6.3.2, 6.10.5 |
| stacking, 5.2.5 | surrounding, 22.4.11 |
| stacks, 9.20.18 | swissprot, 8.1, 8.5 |
| standalone hitlist, 12.1.14 | sxstrace, 22.1.19 |
| standard table, 17.1 | symmetric oligomer, 9.1.3 |
| standardize, 10.12 | symmetry, 5.3.1, 5.3.3, 21.3.8, 21.3.9 |
| table, 10.12 | synthesize, 10.11.5 |
| start, 10.10.2 | synthetic feasibility, 10.11.5 |
| dock, 12.1 | system preferences, 4.7.11 |
| startup, 22.10.2 | tab, 17.1.2, 17.1.21 |
| static, 22.4.8 | pdb, 3.7.4 |
| stereo, 4.7.6, 6.6, 10.3.28, 10.4.2, 22.1, 22.1.6, 22.1.7, 22.1.14 | table, 4.3, 10.1.3, 10.3.24, 10.3.25, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.20.2, 10.23, 16.10, 17, 17.1.6, 17.1.35, 17.1.40, 17.1.45, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.7.1, 22.4.19, 22.8.4, 22.8.5, 22.8.7, 22.8.8 |
| bond, 10.4.2 | alignment, 17.1.12 |
| hardware, 3.6.3.7 | clone, 17.1.16 |
| side-by-side, 3.6.3.6 | color, 17.1.10 |
| stereohard faq, 22.1.6 | column format, 17.1.40 |
| stereoisomer, 10.20.5 | copy, 17.1.36, 17.1.37 |
| stereoisomers, 10.25 | delete, 17.1.17 |
| stick, 4.7.5 | edit, 17.1.24 |
| stl, 6.7 | filter, 17.1.43 |
| replace, 10.3.32 | hyperlink, 10.3.15 |
| font, 17.1.11 | insert, 17.1.33 |
| size, 22.2.1 | join, 3.6.10.5 |
| grid, 17.1.5 | label, 10.3.14 |
| histogram, 17.4.1 | landscape, 17.1.18 |
| insert, 17.1.26 | mark, 10.3.14 |
| layout, 17.1.5 | merge, 3.6.10.5, 10.3.23, 10.32 |
| learning, 17.6 | mouse, 17.1.47 |
| mark, 17.1.13 | name, 17.1.15 |
| row, 17.1.13 | new, 17.1.1 |
| mouse, 17.1.47 | options, 17.1.14 |
| navigation, 17.1.4 | orientation, 17.1.18 |
| new column, 17.1.26 | portrait, 17.1.18 |
| plot, 17.4 | print, 10.3.11, 17.1.4, 17.1.19 |
| print, 17.1.19 | read, 17.1.2 |
| rename, 17.1.15 | rename, 17.1.15 |
| rightclick, 17.1.14 | right click, 17.1.14 |
| row height, 22.2.39 | row, 17.1.33 |
| save, 17.1.3 | rows, 3.6.10.7 |
| selection, 17.1.3 | save, 10.3.9, 17.1.3, 17.1.4, 17.1.21 |
| search, 17.1.9 | scale, 17.1.18 |
| select, 17.1.23 | scroll, 17.1.4 |
| setup, 17.1.18 | sdf, 10.3.9 |
| sort, 17.1.42 | select, 17.1.23 |
| split fragments, 10.3.33 | setup, 17.1.18 |
| view, 17.1.5 | sort, 3.6.10.4, 10.3.5, 17.1.42 |
| save, 17.1.8 | standard, 17.1 |
| zoom translate, 10.3.30 | view, 10.3.29 |
| action, 17.1.47 | width, 17.1.4 |
| alignment, 17.1.12 | tables, 10.31, 17 |
| append, 17.1.43 | tag, 4.6.21, 16.5.7, 17.1.46 |
| clone, 17.1.16 | tags, 4.6.21 |
| color, 17.1.10 | tautomer, 10.24, 22.4.15 |
| column, 10.3.4, 17.1.26, 17.1.32, 17.1.39 | tautomers, 10.24 |
| columns, 10.3.8 | temperature, 5.6.4 |
| compare, 10.3.22 | template, 9.1.2, 10.4.6, 10.37 |
| copy, 10.3.6 | docking, 22.5.3 |
| cursor, 17.1.47 | templates, 10.4.6 |
| delete, 17.1.14, 17.1.17 | terminal, 10.3.28 |
| display, 22.10.4 | font size, 22.2.1 |
| double.click, 17.1.47 | tether, 12.1.7, 16.12.1, 16.12.2 |
| edit, 10.3.17 | text, 4.7.7, 7.6, 7.6.1, 7.6.7, 10.3.28, 10.10.4, 17.4.24, 22.9.6 |
| excel, 10.3.10, 17.1.20 | search, 10.5.4 |
| filter, 10.3.12, 17.1.43 | texture, 3.7.6 |
| find-replace, 10.3.13 | thoroughness, 10.23, 10.37, 22.5.12 |
| to screen, 17.1.4 | three, 10.3.24, 22.8.6 |
| font, 17.1.11 | threshold, 4.7.5 |
| foreground, 22.10.4 | tier, 4.1.13 |
| grid lines, 17.1.4 | time, 22.5.11 |
| hide, 17.1.39 | machine, 22.1.15 |
| racemic, 10.20 | tutorial 2D pharmacophore, 21.6.6 |
| tools 3D, 3.6.6 | 3D pharmacophore, 21.6.5 |
| analysis, 3.6.7 | chemical clustering, 21.6.3 |
| append rows, 3.6.10.7 | search, 21.6.2 |
| extras, 3.6.9 | molecular documents, 21.2 |
| plot function, 3.6.9.1 | sequence alignment, 21.4 |
| superimpose, 3.6.8 | link, 21.4.2 |
| table, 3.6.10 | load sequence, 21.4.1 |
| Learn, 3.6.10.1 | sequence conservation, 21.4.3 |
| clustering, 3.6.10.3 | tutorials, 21 |
| merge, 3.6.10.5 | two, 10.3.24, 22.8.6 |
| predict, 3.6.10.2 | ubuntu, 22.1.18 |
| tooltip, 17.4.26 | ultra large library, 13.5 |
| balloons, 17.4.26 | unclip, 6.3.10, 6.13.1 |
| torsion, 6.12.6, 6.12.6.1, 9.20.7, 10.17, 16.5.4, 22.4.16 | undisplay, 4.1.4, 6.1.7, 22.2.10, 22.2.32 |
| analysis, 10.16 | box shade font, 8.7.7.1 |
| angles, 6.12, 6.12.6 | undisplay-all, 3.6.3.1 |
| free strain, 10.17 | origin, 6.8.12 |
| scan, 9.20.7 | undo, 3.6.2.9, 4.7, 10.4.11, 16.5.5 |
| toxscore, 10.11.3 | redo, 16.5.5 |
| trace, 6.1.10 | uniprot, 4.2.6, 8.5 |
| transition.blend, 22.2.31 | unique, 10.3.28, 10.33 |
| transitions, 7, 22.2.30 | unit, 5.3.3 |
| translate, 4.1.3, 6, 6.12, 10.3.30 | units, 22.5.1 |
| translation, 6.12.3, 8.3.3, 17.4.17 | unix, 22.10.2 |
| transparent, 6.3.9.3 | unsatisfied hydrogen bonds, 16.3.8 |
| background, 6.15.3 | unusual peptide, 4.3 |
| ribbon, 22.2.3 | upload, 19.2 |
| surface, 22.2.37 | use activeicm, 7.12 |
| tree, 8.7.8, 10.28.7, 17.7.2, 17.7.3, 17.7.4 | user, 10.10.5, 19.5 |
| branch swapping, 8.7.8 | defined groups, 16.5.3 |
| distance, 10.28.3 | modifiers, 16.5.3 |
| edit, 10.28.4 | user-defined groups, 10.4.5 |
| reorder, 10.28.3 | van der waal, 6.8.15 |
| triplet, 10.4.7 | variable, 4.7.7, 22.2.8 |
| trouble shooting, 22.1.11 | verbose, 10.23 |
| trouble-shooting, 22.1.12 | large sdf files, 10.1.2 |
| truncating a mesh object, 22.2.15 | vicinity, 10.23 |
| crash qlock, 22.1.13 | video, 2, 6.16, 6.16.1, 6.16.2 |
| tsv, 17.1.21 | view, 3.6.3.19, 7.3.1, 10.3.28, 22.2.22, 22.9.8 |
| tut analyze alternative orientations, 21.3.11 | animate view, 3.6.3.15 |
| occupancy, 21.3.10 | center, 3.6.3.20 |
| symmetry, 21.3.9 | color background, 3.6.3.18 |
| multiple receptor, 21.12.1 | dock results, 12.1.12 |
| tut3, 21.5 | fog, 3.6.3.5 |
| tut3e, 21.3.12 | macroshape, 3.6.3.22 |
| tut5a, 21.9.1 | menu, 3.6.3 |
| tut5b, 21.9.2 | mesh clip, 6.13.1 |
| tut5c, 21.11.1 | perspective, 3.6.3.9 |
| tut5e, 21.11.2 | selection level, 3.6.3.3 |
| shadow, 3.6.3.13 | alignment, 8.7.3 |
| sketch accents, 3.6.3.14 | excel, 10.2.3 |
| slide show, 7.3.1 | image, 3.6.1.15, 22.1.20 |
| tools, 3.6.3 | images, 6.15 |
| tree, 17.7.4 | pdb, 4.5 |
| undisplay all, 3.6.3.1 | image, 3.6.1.15 |
| stach, 9.20.15 | object, 4.1.9 |
| virtual, 13.1, 13.1.1, 13.1.2, 21.9, 21.11.1 | picture, 3.6.1.15 |
| ligand screening, 15 | project, 3.6.1.8, 4.1.10 |
| screen, 13.3, 13.4 | table, 17.1.3 |
| screening, 13, 13.2 | writing a pdb file, 22.4.3 |
| examples, 21.11 | ray, 3.6.5 |
| virus, 5.3.3 | xi, 6.8.5, 22.2.18 |
| visualize, 10.30 | xls, 10.2.3 |
| apf fields, 16.3.11 | xlsx, 10.2.3 |
| chemical space, 10.30 | xml, 19.2 |
| ligand strain, 16.3.10 | xstick, 6.1.2, 22.2.21 |
| vls, 12.2, 12.2.3, 13, 13.1, 13.1.6, 13.1.7.2, 13.1.9.4, 13.3, 14.4, 21.11.2, 22.5.7, 22.5.8, 22.5.24 | xyz, 22.2.10 |
| analysis, 13.1.9.4 | youtube, 2 |
| display, 13.1.9.3 | zoom, 4.1.3, 6, 6.12, 6.12.4, 10.3.30, 17.4.17 |
| command line, 13.1.7.2 | |
| getting started, 13.1.2 | |
| histogram scatter plot, 13.1.9.2 | |
| introduction, 13.1.1 | |
| preferences, 13.1.4 | |
| results, 13.1.8 | |
| run, 13.1.6 | |
| score, 12.1.1.4 | |
| visualization, 13.1.11 | |
| results, 13.1.8 | |
| volume, 10.4.9 | |
| water, 9.20.17 | |
| waters, 9.20.17 | |
| wavefront, 3.7.6, 6.3.11, 6.7 | |
| weak, 22.4.20 | |
| web, 21.2 | |
| browser, 3.6.1.12 | |
| weight, 10.11, 22.8.7, 22.8.10 | |
| weighted, 17.7.1 | |
| width, 17.1.22 | |
| window, 4.1.13 | |
| windows, 4.1.13.1, 10.10.1 | |
| wire, 3.7.1, 4.7.5, 6.1.1, 22.2.4, 22.2.21 | |
| wireBondSeparation, 4.7.1 | |
| working directory, 22.5.23 | |
| workspace, 4.1.4, 5.1.3.1, 10.7.2 | |
| panel, 4.1.4 | |
| selection, 4.6.9 | |
| navigation, 4.6.10 | |
| write, 4.1.14, 4.5, 17.4.21, 22.9.4, 22.9.7 | |
|