Oct 21 2010 Feedback.
Contents
 
Introduction
How To Guide
 ICM-Browser Guide
 ICM-Browser-Pro Guide
 ActiveICM Guide
 ICM-Chemist Guide
 ICM-Chemist-Pro Guide
  3D Ligand Editor
  Convert to 3D
  Superimpose Chemicals
  QSAR
Getting Started
Molecular Graphics
Slides and Documents
ActiveICM
Movie Making
Sequences & Alignments
Protein Structure Analysis
Protein Superposition
Crystallographic Analysis
Homology & Modeling
3D Predict
Molecular Mechanics
Cheminformatics
Chemsitry Menu
Docking
Ligand Editor
Tables
Local Databases
FAQs
Tutorials
 
Index
PrevICM User's Guide
2.5 ICM-Chemist-Pro How To Guide		Next

[ 3D Ligand Editor | Convert to 3D | Superimpose Chemicals | QSAR ]

2.5.1 How to use the ICM 3D Ligand Editor


ICM Chemist-Pro Contains All the Tools in ICM-Chemist ICM-Chemist Tutorials
ICM 3D Ligand Editor: Setup
How to setup the ligand in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to setup the receptor in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to change the 3D Ligand Editor preferences.HTML GUI Manualvideo
How to configure the default display in the ICM 3D Ligand Editor.HTML GUI Manualvideo
ICM 3D Ligand Editor: Display
How to display and undisplay the ligand surface representation in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to display hydrogen bonds in the ICM 3D ligand editor.HTML GUI Manualvideo
How to display energy atomic circles in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to display and undisplay hydrogen atoms in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to display unsatisfied hydrogen bonds in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to center on a ligand in the ICM 3D Ligand Editor.HTML GUI Manualvideo
ICM 3D Ligand Editor: Edit Ligand
How to begin editing your ligand in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to undo and redo changes in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to add and sample new substiutents to your ligand in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to sample more than one substituent at a time in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to edit the ligand in 2D in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to evaluate the SCORE and ligand strain.HTML GUI Manualvideo
How to add an edited ligand to a chemical spreadsheet (table).HTML GUI Manualvideo
How to change the size of the ligand binding pocket - change purple box size.HTML GUI Manualvideo
ICM 3D Ligand Editor: Docking and Minimization
How to perform ligand minimization in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to re-dock a ligand in the ICM 3D Ligand Editor.HTML GUI Manualvideo
How to restrain (tether) atoms during docking.HTML GUI Manualvideo
How to screen databases of chemical substituents.HTML GUI Manualvideo
How to sample linkers between two chemical fragments.HTML GUI Manualvideo

2.5.2 How to Convert Chemicals to 3D


Convert Chemicals to 3D
How to convert 2D sketches in the molecule editor into 3D.HTML GUI Manualvideo
How to convert 2D chemical sketches to 3D.HTML GUI Manualvideo
How to generate 3D ligand conformers.HTML GUI Manualvideo

2.5.3 How to Superimpose Chemicals


How to Superimpose Chemicals
How to Perform Rigid and Flexible Chemical Substructure Superposition.HTML GUI Manualvideo
How to use Atomic Property Fields for Chemical Superposition HTML GUI Manualvideo

2.5.4 How to Perform QSAR


QSAR
How to build a QSAR prediction model.HTML GUI Manualvideo
How to apply a QSAR prediction model.HTML GUI Manualvideo

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