Index
&, 2.14.3
Box, 2.35.21
2D chemicals, 2.23.9.16
Bracket, 2.35.22
labels, 2.34.58.1
C, 5.3
to 3D, 3.17
CCP4, 5.6.6
trees, 2.34.65.38
CGI, 2.11
smooth, 2.35.146.2
COLOR.bg, 2.19.9
3D chemical builder, 1.4.2.8
distanceAtom, 2.19.10
font size, 2.34.23.12
label, 2.19.11
label, 2.34.23.12, 2.34.89.40
CONSENSUS, 2.23.1
labels, 2.34.58.1
CONSENSUSCOLOR, 2.23.2
mol file, 2.37.86
CONSENSUS_strength, 2.19.12
plots intro, 1.4.3.7
smoothing, 2.35.146.3
Cad1, 2.35.23.1
superposition, 2.37.22
Cadalign, 2.35.23.2
transformations, 2.34.102.2
Ceil, 2.35.24
tree, 2.34.65.38
Cell, 2.35.25
chemical similarity, 2.35.136
Charge, 2.35.26
pharmacophore comparison, 2.35.136.4
Chemical, 2.35.27
3dxml, 5.5.3
Functions, 2.28
=, 2.14.1
Synthetic Accessibility, 2.31
A, 5.1
Cluster, 2.35.28
ANN, 2.34.53
Collada, 5.5.3
APF distance, 2.35.136
Collection, 2.35.28.1
Abs, 2.35.1
Color, 2.35.29
Acc, 2.35.2
from gradient, 2.35.29.1
Acos, 2.35.3
image, 2.35.29.2
Acosh, 2.35.4
protein, 2.35.29.3
Adobe, 2.21.23
CombiRIDGE, 3.13.1.24
Align, 2.35.5
Compare, 2.35.30
sequence, 2.35.5.1
Connolly surface, 5.8.7
AlignSS, 2.36.1
Consensus, 2.35.31
Angle, 2.35.6
Contour, 2.35.32
Apple, 3.14.6.2
Corr, 2.35.33
Area, 2.35.7
Cos, 2.35.34
residue contacts, 2.35.7.1
Cosh, 2.35.35
Asin, 2.35.8
Count, 2.35.36
Asinh, 2.35.9
CubicRoot, 2.35.37
Ask, 2.35.10
D, 5.4
Askg, 2.35.11
DAE, 5.5.3
Atan, 2.35.12
DE, 2.34.35.2
Atan2, 2.35.13
Atanh, 2.35.14
DNA Representation, 1.4.1.3
Atom, 2.35.15
alignment, 2.34.3.4
Augment, 2.35.16
melting temperature, 2.35.164
Axis, 2.35.17
to RNA conversion, 2.35.138.1
B, 5.2
views, 1.4.1.3
BPMC, 5.2.6
Date, 2.35.38
Bfactor, 2.35.19
Deletion, 2.35.39
Blob, 2.35.18
Boltzmann, 2.35.20
numeric, 2.35.40
Disgeo, 2.35.43
Find, 2.35.56
chemical, 2.35.56.3
2 alignments, 2.35.44.13
pattern, 2.35.56.3
matrices, 2.35.44.9
in array, 2.35.56.1
Dayhoff, 2.35.44.11
table, 2.35.56.2
Tanimoto, 2.35.44.7
FlexLM license info, 2.35.188
alignment, 2.35.44.12
Floor, 2.35.57
as_, 2.35.44.3
Formula, 2.35.58
rarray, 2.35.44.4
GCNN, 3.13.1.26
atoms, 2.35.44.3
GINGER, 3.13.1.22
chemical, 2.35.44.7, 2.35.44.15
GPU, 3.13.1.22
chemset, 2.35.44.8
GRAPHICS, 2.23.5
dayhoff, 2.35.44.11
alignmentRainbow, 2.23.5.1
hierarchical, 2.35.44.6
atomLabelShift, 2.23.5.2
iarray, 2.35.44.1
atomValueCircles, 2.23.5.3
alignment, 2.35.44.12
ballStickRatio, 2.23.5.5
multiple atomic, 2.35.44.4
chainBreakLabelDisplay, 2.23.5.8
rarray, 2.35.44.2
chainBreakStyle, 2.23.5.7
tether, 2.35.44.10
clashWidth, 2.23.5.6
tree, 2.35.44.14
clipStatic, 2.23.5.10
cluster, 2.35.44.14
clippingPlane, 2.23.5.9
H, 5.5
cpkClipCaps, 2.23.5.11
Ligase protacModel.icm, 3.16
displayLineLabels, 2.23.5.12
number, 2.35.44.6
displayMapBox, 2.23.5.13
EDS server, 2.37.42
dnaBallRadius, 2.23.5.14
ESP, 2.34.13.5
dnaRibbonRatio, 2.23.5.15
EST-alignment, 2.34.3.4
dnaRibbonStyle, 2.23.5.16
Eigen, 2.35.45
dnaRibbonWidth, 2.23.5.17
Enamine, 3.13.1.25
dnaRibbonWorm, 2.23.5.18
Energy, 2.35.46
dnaStickRadius, 2.23.5.19
Entropy, 2.35.47
formalChargeDisplay, 2.23.5.20
Error, 2.35.48
grobDotSize, 2.23.5.21
soap, 2.35.49
grobLineWidth, 2.23.5.22
Exist, 2.35.50
hbondAngleSharpness, 2.23.5.26
molcart, 2.35.50.1
hbondBallPeriod, 2.23.5.27
Existenv, 2.35.51
hbondBallStyle, 2.23.5.28
Exp, 2.35.53
hbondMinStrength, 2.23.5.25
Extension, 2.35.52
hbondRebuild, 2.23.5.24
FILTER, 2.23.3
hbondStyle, 2.23.5.23
Z, 2.23.3.1
hbondWidth, 2.23.5.29
gz, 2.23.3.2
hetatmZoom, 2.23.5.31
uue, 2.23.3.3
hydrogenDisplay, 2.23.5.32
FTP, 2.23.4
light, 2.23.5.33
createFile, 2.23.4.1
lightPosition, 2.23.5.34
keepFile, 2.23.4.2
mapLineWidth, 2.23.5.35
proxy, 2.23.4.3
occupancyDisplay, 2.23.5.36
occupancyRadiusRatio, 2.23.5.37
user, 2.35.54.1
File, 2.35.55
rainbowBarStyle, 2.23.5.39
resLabelYShift, 2.23.5.41
HTTP.ignoreProxyDomains, 2.23.4.5
ribbonCylinderRadius, 2.23.5.42
proxy, 2.23.4.4
ribbonGapDistance, 2.23.5.43
Hartree-Fock, 2.34.84.21, 2.34.110.17
ribbonRatio, 2.23.5.44
Header, 2.35.64
ribbonWidth, 2.23.5.45
Histogram, 2.35.65
ribbonWorm, 2.23.5.46
N, 5.6
rocking, 2.23.5.47
ICM desktop, 2.23.8.6
rockingRange, 2.23.5.48
documents, 2.34.84.4
rockingSpeed, 2.23.5.49
modules, 1.4.4
selectionLevel, 2.23.5.50
object, 2.37.13
selectionStyle, 2.23.5.51
residue library, 2.21.24
sketchAccents, 2.23.5.30
stereoMode, 2.23.5.52
intro, 1.7.1
script, 2.34.8
surfaceDotDensity, 2.23.5.55
ICMFF force field, 2.37.79
surfaceDotSize, 2.23.5.54
ICMHOME, 3.1.2.1
surfaceProbeRadius, 2.23.5.56
shell variable, 3.1.2.1
transparency, 2.23.5.57
IMAGE, 2.23.9
wormRadius, 2.23.5.58
bondLength2D, 2.23.9.15
GRID, 2.23.6
color, 2.23.9.8
gcghExteriorPenalty, 2.23.6.1
compress, 2.23.9.9
gpGaussianRadius, 2.23.6.6
font, 2.23.9.16
margin, 2.23.6.2
gammaCorrection, 2.23.9.7
maxEl, 2.23.6.3
generateAlpha, 2.23.9.10
maxVw, 2.23.6.5
lineWidth, 2.23.9.3
minEl, 2.23.6.4
lineWidth2D, 2.23.9.14
GROB, 2.23.7
orientation, 2.23.9.17
arrowRadius, 2.23.7.3
paperSize, 2.23.9.18
atomSphereRadius, 2.23.7.1
previewResolution, 2.23.9.13
contourSigmaIncrement, 2.23.7.5
previewer, 2.23.9.12
relArrowHead, 2.23.7.4
printerDPI, 2.23.9.2
relArrowSize, 2.23.7.2
quality, 2.23.9.1
GUI, 2.23.8
rgb2bw, 2.23.9.19
defaults, 3.14.6.2
scale, 2.23.9.4
dialog, 2.33
stereoAngle, 2.23.9.6
plot, 2.34.65.32
stereoBase, 2.23.9.5
preferences, 2.34.85.4
stereoText, 2.23.9.11
tableRowMarkColors, 2.23.8.5
writeScale, 2.23.9.20
windowLayout, 2.23.8.6
I_out, 2.24.4
workspaceFolderStyle, 2.23.8.9
workspaceStyle, 2.23.8.7
atom numbers, 2.35.66.4
workspaceTabStyle, 2.23.8.8
bits to integers, 2.35.66.3
GaussFit, 2.35.82
inverse, 2.35.66.2
Getarg, 2.35.59
residue numbers, 2.35.66.5
Getenv, 2.35.60
reverse, 2.35.66.2
GigaScreen, 3.13.1.26
stack, 2.35.66.6
Gradient, 2.35.61
Icm Options, 2.1
Graphics, 1.4.1
IcmSequence, 2.35.67
Grob, 2.35.62
Image, 2.35.68
Group, 2.35.63
collection, 3.9.2.1
InChI, 2.35.69
histogram, 2.35.90.12
InChi, 2.35.69
new, 2.35.90.1
InList, 2.35.105
residue areas, 2.35.90.8
Index, 2.35.70
comparison, 2.35.90.5
chemical, 2.35.70.2
stack, 2.35.90.11
compare, 2.35.70.10
sub, 2.35.90.2
element in array, 2.35.70.8
symmetric, 2.35.90.3
fork, 2.35.70.1
table, 2.35.90.6
regexp, 2.35.70.4
tensor, 2.35.90.7
string, 2.35.70.3
Max, 2.35.91
table label, 2.35.70.6
image graphic, 2.35.91.1
selection, 2.35.70.5
MaxHKL, 2.35.92
tree, 2.35.70.9
Mean, 2.35.94
unique elements, 2.35.70.7
Median, 2.35.93
Indexx, 2.35.71
Method, 2.22.13
Info, 2.35.73
Min, 2.35.95
image, 2.35.74
Mod, 2.35.97
model, 2.35.75
Mol, 2.35.98
Insertion, 2.35.72
MolLogP, 2.29
Integer, 2.35.76
MolLogS, 2.30
Integral, 2.35.77
MolPSA, 5.7.12
Interrupt, 2.35.78
MolSynth, 2.31
Introduction, 1
Moment, 2.35.88
JSON, 2.34.84.57
of Inertia, 2.35.88
LIBRARY, 2.23.10
Money, 2.35.96
men, 2.23.10.1
N-terminus, 2.23.14.4
res, 2.23.10.2
NMR, 2.34.63.1
Label, 2.35.79
NOE averaging, 2.22.6
Laplacian, 2.35.80
Name, 2.35.99
Latent, 2.35.187.3
chemical, 2.35.99.6
LatentVector, 2.35.187.3
property, 2.35.99.1
Length, 2.35.81
close sequence, 2.35.99.3
LinearFit, 2.35.83
conf, 2.35.99.7
LinearModel, 2.35.84
image, 2.35.99.11
Log, 2.35.85
molcart, 2.35.99.12
object parray, 2.35.99.10
sequence, 2.35.99.8
MD, 3.19
soap, 2.35.99.2
M_out, 2.24.5
string, 2.35.99.4
Mac, 3.14.6.2
tree, 2.35.99.5
Map, 2.35.86
Namex, 2.35.100
Markush structures, 2.34.55
image, 2.35.100.2
Mass, 2.35.87
sequence, 2.35.100.1
Match, 2.35.89
Newick tree format, 2.35.156.4
Mathews, 2.35.136.5
Next, 2.35.101, 2.35.101.1
Matrix, 2.35.90
covalent neighbors, 2.35.101.1
alignment, 2.35.90.9
Nof, 2.35.102
boundary, 2.35.90.10
chemical, 2.35.102.2
color, 2.35.90.4
distance, 2.35.102.3
grob connectivity, 2.35.90.13
latent, 2.35.102.6
molcart, 2.35.102.5
REBEL, 3.7.2
soap, 2.35.102.7
faq, 3.7.2
tree, 2.35.102.1
RESP, 2.34.89.11, 5.5.7
Norm, 2.35.103
file, 2.34.55
Normalize, 2.35.104
RIDE, 3.18
NotInList, 2.35.105
R, 5.7
RNA topology, 2.23.5.16
OBJECT, 2.23.11
RTCNN, 3.13.1.26
Obj, 2.35.106
R_2out, 2.24.7
Occupancy, 2.35.107
R_out, 2.24.6
Radius, 2.35.120
PCA, 3.3.9
Random, 2.35.121
PLOT, 2.23.12
string, 2.35.121.1
Yratio, 2.23.12.9
Rarray, 2.35.122
box, 2.23.12.1
reverse, 2.35.122.2
color, 2.23.12.2
sequence projection, 2.35.122.1
font, 2.23.12.3
alignment projection, 2.35.122.3
fontSize, 2.23.12.4
strength, 2.35.122.5
gridLineWidth, 2.23.12.5
property assignment, 2.35.122.4
labelFont, 2.23.12.13
RarrayAlignment, 2.35.122.5
lineWidth, 2.23.12.6
Rarrayinverse, 2.35.122.2
logo, 2.23.12.10
Real, 2.35.123
markSize, 2.23.12.7
Reference, 2.35.125
numberOffset, 2.23.12.8
Guide, 2
orientation, 2.23.12.11
Remainder, 2.35.124
rainbowStyle, 2.23.12.14
Replace, 2.35.126
seriesLabels, 2.23.12.12
chemical, 2.35.126.4
PLS, 2.35.102.6
exact, 2.35.126.1
error, 2.35.136.5
regexp, 2.35.126.3
models, 2.35.136.5
simple, 2.35.126.2
PROTAC, 3.16
Parray, 2.35.109
Resali, 2.35.128
Parray-object, 2.35.109
Resolution, 2.35.129
Path, 2.35.108
Rfactor, 2.35.131
Pattern, 2.35.110
Rfree, 2.35.132
Pi, 2.35.111
Ride, 3.18
Polar Surface Area, 5.7.12
Ring, 2.35.130
Potential, 2.35.112
Rmsd, 2.35.133
Power, 2.35.113
of subset, 2.23.14
Predict, 2.35.114
Rot, 2.35.134
Probability, 2.35.115
S, 5.8
Profile, 2.35.116
Property, 2.35.117
SC, 2.34.35.2
Protac, 3.16
SEQUENCE.restoreOrigNames, 2.23.12.15
Protonation state, 2.35.160.11
SGE, 3.13.1.20
Putarg, 2.35.118
SITE, 2.23.13
Putenv, 2.35.119
defSelect, 2.23.13.2
QSAR, 2.34.53
labelOffset, 2.23.13.3
R-groups, 2.34.55
labelStyle, 2.23.13.4
REAL, 3.13.1.25
labelWrap, 2.23.13.5
wrapComment, 2.23.13.7
Slide, 2.35.144
SLN notation, 2.35.156.10
Smiles, 2.35.145
SLURM, 3.13.1.20
matrix, 2.35.146.2
SMILES, 2.27
Smoothrs, 2.35.146.3
SoapMessage, 2.35.152
request message, 2.35.152
SolveQuadratic, 2.35.147
SSSR, 2.35.130
SolveQubic, 2.35.148
S_out, 2.24.8
Sort, 2.35.153
S_proteinTags, 2.24.9
Sarray, 2.35.135
Split, 2.35.154
index, 2.35.135.1
chemical, 2.35.154.4
Score, 2.35.136
multisep, 2.35.154.3
alignment, 2.35.136.9
regexp, 2.35.154.2
apf, 2.35.136.4
tree, 2.35.154.1
chemset, 2.35.136.2
Sql, 2.35.149
conservation, 2.35.136.8
Sqrt, 2.35.150
model, 2.35.136.5
Srmsd, 2.35.155
overlap, 2.35.136.1
Sstructure, 2.35.157
predictions, 2.35.136.6
String, 2.35.156, 2.35.156.8
sequence, 2.35.136.7
alternative, 2.35.156.7
torsion, 2.35.136.3
date, 2.35.156.2
Scripting Tutorials, 1.8
mol, 2.35.156.3
Select, 2.35.137
selection, 2.35.156.8
break, 2.35.137.1
slide gui, 2.35.156.9
alignment, 2.35.137.14
substring, 2.35.156.1
atom property, 2.35.137.7
chemical formula, 2.35.156.10
nmembers, 2.35.137.4
Sum, 2.35.158
string, 2.35.137.9
chemical, 2.35.158.1
expand, 2.35.137.6
image, 2.35.158.2
fix, 2.35.137.2
Swissprot, 2.34.110.24
graphical, 2.35.137.5
Symgroup, 2.35.159
neighbors, 2.35.137.3
T, 5.9
Select_by atom numbers, 2.35.137.10
TOOLS, 2.23.14
Select_by_sequence, 2.35.137.13
edsDir, 2.23.14.1
Select_by_text, 2.35.137.9
membrane, 2.23.14.2
Select_lists, 2.35.137.12
minSphereCubeSize, 2.23.14.3
Select_patching, 2.35.137.11
pdbChargeNterm, 2.23.14.4
Select_projection, 2.35.137.8
pdbReadNmrModels, 2.23.14.5
Sequence, 2.35.138
array, 2.35.138.3
smilesXyzSeparator, 2.23.14.7
Sequence(dna_or_rna nucleotide), 2.35.138.1
superimposeMaxDeviation, 2.23.14.10
reverse), 2.35.138.2
superimposeMaxIterations, 2.23.14.8
Shannon, 2.35.47
superimposeMinAtomFraction, 2.23.14.9
Shuffle, 2.35.139
tsShape, 2.23.14.12
Sign, 2.35.140
tsWeight, 2.23.14.13
Simulations, 1.4.2
writePdbRenameRes, 2.23.14.14
Sin, 2.35.141
Table, 2.35.160
Sinh, 2.35.142
alignment numbers, 2.35.160.3
Site, 2.35.143
distance, 2.35.160.10
model, 2.35.160.8
View, 2.35.190
chem, 2.35.160.9
Volume, 2.35.189
pairs, 2.35.160.5
WEBAUTOLINK, 2.23.16
plot, 2.35.160.7
WEBLINK, 2.23.15
stack, 2.35.160.6
Warning, 2.35.191
url_decoder, 2.35.160.1
Wavefront format, 2.34.84.22
Table(alignment), 2.35.160.2
XML, 2.12
Table(stack), 2.35.160.6
Xyz, 2.35.192
Tan, 2.35.161
axes, 2.35.192.8
Tanh, 2.35.162
chemical match, 2.35.192.6
Tanimoto, 2.35.66.3
fract, 2.35.192.4
distance, 2.34.65.37
mesh, 2.35.192.3
matrix, 2.35.44.7
points, 2.35.192.1
Temperature, 2.35.164
rings, 2.35.192.2
Tensor, 2.35.163
transformed xyz, 2.35.192.5
Time, 2.35.165
vector2matrix, 2.35.192.7
Tointeger, 2.35.166
Z-shift, 2.19.35
Tolower, 2.35.167
ZEGA, 5.10.9
Toreal, 2.35.168
intro, 1.4.3.6
Torsion, 2.35.169
_NAME, 2.34.89.48
Tostring, 2.35.170
_chemBatch, 3.1.2.5
Toupper, 2.35.171
_chemSuper, 3.15
ToxScore, 2.36.2
_confGen, 3.17
Tr123, 2.35.172
_dockBatch, 3.13.1.7
Tr321, 2.35.173
_dockScan, 3.13.1.18
Trace, 2.35.174
_macro, 2.38.1
Trans, 2.35.175
file, 2.38.1
Transform, 2.35.176
_startup, 3.1.2.3
Transpose, 2.35.177
file, 2.38.2
Trim, 2.35.178
icm, 2.38.2
chemical, 2.35.179
a_, 2.8.1
sequence, 2.35.180
abbr, 1.6
Turn, 2.35.181
abbreviations, 1.6
Type, 2.35.182
absolute to cell x y z, 2.35.192.4
molcart, 2.35.182.2
accFunction, 2.24.2
soap, 2.35.182.1
acceptor, 3.6.1
Z, 5.10
access large sdf file, 2.34.84.24
Unique, 2.35.183
accessMethod, 2.22.2
Unix, 2.35.184
accessible residues, 3.3.6
Uppsala, 2.37.42
surface, 2.34.65.14, 5.8.15
server, 2.37.43
accessing sections, 2.34.110.24
SYNTHES, 3.13.1.25
accuracy, 2.35.136.5
V_, 2.8.1
acidity constant, 2.34.89.12, 2.34.89.13
Value, 2.35.185
activate fog, 2.34.23.24
soap, 2.35.186
alignment, 2.34.89.41
document, 2.34.89.41
symmetry transformation, 2.35.187.2
tab, 2.34.89.41
Vectorproduct, 2.35.187.1
table, 5.9.2.4
Vectorsymmetrytransformation, 2.35.187.2
add, 2.34.1
Version, 2.35.188
column, 2.34.1.1
matrix, 2.34.1.2
slide, 2.34.1.3
score, 2.35.136.8
table, 2.34.1.4
sequence reordering, 2.35.5
row, 2.34.1.4
strength, 2.35.122.5
addBfactor, 2.19.1
adding atoms to non-ICM objects, 2.34.7.1
to sequence transfer, 2.35.122.1
columns to table, 2.34.1.1
text conversion, 2.35.156.4
hydrogens, 2.37.13
weighted, 2.35.5
in place, 2.14.4
gapExtension, 2.19.18
to slideshow, 2.34.1.3
gapOpen, 2.19.19
admet selection, 3.13.1.13
alignment_as_text, 2.35.156.4
advanced chemical search, 3.6
aliphatic amines, 2.34.70.2
operations, 2.14.6
all, 5.1.2
ops, 2.14.6
torsions table, 3.3.11
ahfs, 2.35.44.6
ai, 3.13.1.21
channel, 2.23.9.10
ali_seq_project, 2.35.156.5
alternative flag, 2.34.89.19
alias, 2.34.2
amber, 5.1.4
align, 2.34.3
3D, 2.34.3.5
colors, 2.35.29.3
faq, 3.3.2
labels, 2.34.3.2
heavy, 2.34.3.6
anchor, 3.13.1.24
how to, 3.3.2
and, 2.14.3
chemical, 2.34.88.1
angle rotation, 2.37.84
fragments, 2.34.3.4
angles, 2.35.102.3
intro, 1.4.3.3
angular hbond dependence, 2.23.5.26
number, 2.34.3.2
animated story, 5.8.14
chemical, 2.34.3.1
res numbers, 2.34.3.2
sequence, 2.34.3.3
sequences, 2.34.3.3
append, 5.1.5
alignMethod, 2.22.3
a tables, 2.34.1.4
alignMinCoverage, 2.19.2
column, 2.34.4.3
alignMinMethod, 2.19.2
command, 2.34.4
alignOldStatWeight, 2.19.3
sequence, 2.34.4.1
alignTwoSequences, 2.37.1
to group, 2.34.4.1
aligned residues, 2.35.128
stack, 2.34.4.2
tables, 2.34.50
as table, 2.35.160.2
by shared column, 2.34.4.3
block length, 2.18.22
appending, 2.34.1.1
secondary structure, 2.36.1
an element, 2.14.4
cleaning, 2.35.146.4
menu items, 2.23.10.1
color by property, 2.34.89.35
representations to a slide, 2.34.23.21
coloring, 2.21.1
rows to matrix, 2.34.1.2
conservation, 2.37.8
area under curve, 2.37.21
distance, 2.35.137.13
arguments, 2.34.64
editor, 2.4
arithmetic operations, 2.14.2
extraction, 2.35.5
arithmetics, 2.14
gap format, 5.1.1.1
aromatic planes, 2.37.4
intro, 1.4.3.4
derivative, 2.35.146.1
background, 2.35.29.2
overlap, 2.35.136.1
color, 2.19.9
parray, 2.34.22.31
size, 2.35.102
base, 5.2.1
subset, 2.6
pair diagram, 2.23.5.16
arrow from selection, 2.37.36
basis set, 2.34.84.21, 2.34.110.17
length, 2.34.89.27
batch chemical processing, 3.1.2.5
as2_out, 2.24.14
docking, 3.13.1.18
as_, 2.8.8
beta, 5.2.3
bfactor circles, 2.23.5.3
as_out, 2.24.13
biased probability monte carlo, 2.34.71
assign, 2.34.5
binary file table of contents, 2.34.84.2
residue, 2.34.6.1
files, 2.34.110.2
ring conformation to template, 2.34.66.5
string, 5.2.4
sstructure, 2.34.5.1
key, 2.34.89.44
binding energy, 3.7.4
assignment, 2.14.1
pocket finding, 3.4.2
atc code, 2.35.44.6
pockets, 2.34.92.1
side comparison, 2.37.8
centers within, 2.35.151
site analysis, 3.4.2
code file, 2.38.4
biological symmetry, 2.34.89.9
coordinates, 2.35.192.1
vector, 2.35.66.3
flickering, 2.34.89.3
to integers compression, 2.35.66.3
label font, 2.38.15
blast, 2.34.110.25
labels, 2.34.89.2
files, 2.34.110.25
blast-formatted database, 2.34.35.3, 2.34.110.25
blending, 2.34.110.31
proximity to surface, 2.34.90.9
images, 2.35.158.2
selection by number, 2.35.66.4
blob, 5.2.4
type, 2.35.182
bold, 2.34.89.39.1
user field, 2.35.54.1
bond angle bending, 2.38.5
atomLabelStyle, 2.22.4
errors, 2.34.90.12
atomSingleStyle, 2.22.5
stretching, 2.38.6
atomic contributions, 2.34.90.20, 2.34.90.22
to protein, 2.34.72.3
coordinate transfer, 2.34.89.3
width, 2.23.9.14
property fieds, 3.18
bonded atoms, 2.35.101.1
fields, 3.15
born radii, 2.34.90.9
solvation contributions, 2.35.7
boundary element, 5.2.5
in residue, 2.35.63
matrix, 2.35.90.10
alternative position, 2.34.89.19
box, 2.35.21
selecting, 2.8.8
break, 2.34.6
translate, 2.34.89.3
brightness, 2.23.5.33
attenuation by occupancy, 2.34.65.25
build, 2.34.7
auc enrichment, 2.37.21
atom, 2.34.7.1
auto saving log, 2.22.11
column, 2.34.7.2
autoSavePeriod, 2.18.1
conf, 2.34.7.3
automated setup, 3.13.1.7
faq, 3.8.1
avi, 2.34.110.31
from string, 2.34.7.5
axis, 5.1.8
helix, 3.10.5
axisLength, 2.19.4
how to, 3.8.1
loop, 2.34.7.8
channel, 2.23.14.2
model, 2.34.7.7, 2.34.110.9
molcart, 2.34.7.11
compounds, 2.34.70.2
sequence, 2.34.7.4
fitting, 2.34.89.11
smiles, 2.34.7.9
prediction, 2.34.89.12, 2.34.89.13
string, 2.34.7.5
state, 2.34.29
tautomer, 2.34.7.6
change, 2.34.89.10
built-in functions, 5.5.5
chem formula, 2.35.156.10
plot, 2.34.89.54
chemSuper3D, 2.37.22
atoms, 2.34.14
contact surface, 2.34.14
2D drawings, 2.34.65.9
molecule, 2.34.13.1
SMARTS search, 2.34.35.5
number of bonds, 2.35.137.3
atom annotation, 2.34.22.20
variables, 2.34.14
database, 3.5
cage, 2.37.4
calcArea, 2.37.2
calcBindingEnergy, 2.37.3
calcDihedralAngle, 2.37.4
diversity, 3.14.6.4
calcEnergyStrain, 2.37.20
calcEnsembleAver, 2.37.5
quality, 2.23.9.15
calcMaps, 2.37.6
fingerprints, 2.9
calcPairSeqIdsFromAli, 2.37.7
formula, 2.35.156.10
calcPepHelicity, 2.37.9
fragment counting, 2.35.102.2
calcProtUnfoldingEnergy, 2.37.10
functions, 2.28
calcRmsd, 2.37.11
keys, 2.34.65.21
calcRoc, 2.37.21
match coordinates, 2.35.192.6
calcSeqContent, 2.37.12
calcSeqSimilarity, 2.37.8
models, 2.35.99.1
calculate phases, 3.11.2
call, 2.34.8
name, 2.35.99.6
canonical form, 2.35.45
normalization, 2.34.70
carboxylic acid, 2.34.70.2
rules, 2.34.70.4
cartesian cooridnates, 2.35.192
cartridge, 3.5
search, 2.35.56.3
cavities, 2.34.92.1
reaction product generation, 2.34.65.33
cavity, 5.3.1
analysis, 3.3.13
similarity, 3.5
ccp4 maps, 2.34.84.27
simplification, 2.35.178
cd, 2.34.89.22
cell axis vectors, 2.35.192.8
structure, 2.34.110.22
specific icm commands, 5.9.2.4
from smiles, 2.34.89.7
substructure, 2.34.35.4
cgi programming with icm, 2.11
mask, 2.34.65.21
symbol, 2.34.89.9
table, 2.25
change atom position, 2.34.89.3
text format, 5.6.11
sequence position in multiple alignment, 2.34.72.7
topological descriptors, 2.35.40
unix directory, 2.34.89.22
view, 2.34.89.55
changing local stick radii, 2.34.89.87
surface dot size, 2.23.5.54
chiral isomer generation, 2.34.30
choosing ligands, 3.13.1.2
map, 2.34.13.4.4
chroma, 2.35.90.4
matrix, 2.34.13.4.2
cif, 2.34.84.48
potential, 2.34.13.4.5
circular permutation of coordinates, 2.34.69
unique, 2.34.13.4.1
clamp values to range, 2.35.178
label, 2.34.13.6
clashThreshold, 2.19.5
map, 2.34.13.7
clashes, 2.34.65.16
by value, 2.34.23.16
labels, 2.35.166
molecule, 2.34.13.1
classification, 2.35.44.6
names, 2.35.29
clear, 2.34.10
object, 2.34.11.2
graphical selection, 2.34.10
preference, 2.19.10
screen, 2.34.10
quantum, 2.34.13.5
click and lock, 5.9.2.4
specification, 2.34.11.1
surface by conservation, 2.34.13.3
closer than threshold, 2.35.44.9
table, 2.35.29.3
closest sequence, 2.35.99.3
volume, 2.34.13.8
value, 2.35.56.1
column, 5.3.5
cluster, 2.35.154.1
correlation, 2.34.91.3
center, 2.35.70.9
function, 2.34.7.2
centers, 2.13.1
selection, 2.35.70.9
of grobs, 2.35.109
tree, 2.35.99.5
selection, 2.35.99
size, 2.35.102.1
combiRIDGE, 3.13.1.24
combinatorial compounds, 2.35.27
libraries, 2.34.65.33, 2.35.102.4
cnMethodAverage, 2.22.6
PDB, 2.37.92
cnWeight, 2.19.6
transformations, 3.10.4
code, 2.35.44.6
combining plots, 2.34.65.32
coil, 5.3.4
receptor and ligand stacks, 2.34.4.2
line editing, 2.2
accessibility, 2.34.13
help, 2.34.45
background, 2.34.13.2
options, 2.1
example, 3.2.7
word list, 3.1.5
accessibility, 3.2.11
alignment, 2.34.13.3
communication protocols, 2.32
atom contributions, 2.34.12
comp, 2.35.105
bfactor, 3.2.9
charge, 3.2.12
electrostatic potential, 2.18.5
angles, 2.34.14.2
hydrophobicity, 3.2.10
atom, 2.34.14.1
pharmacophore, 2.34.12
by rmsd without superposition, 2.34.14.1
potential, 2.37.25
chemical tables, 2.34.35.11
shape depth, 2.34.13
patch only, 2.34.14.3
rmsd, 2.34.14.1
choice, 2.19.9
surface, 2.34.14.3
file, 2.38.15
variables, 2.34.14.2
grob, 2.34.13.4
compareMethod, 2.22.7
by atom selection, 2.34.13.4.3
comparing two sarrays, 2.35.105
atoms, 2.23.7.1
comparison, 2.35.70.10
complete view, 2.35.144
compound accessibilities, 3.14.4.1
3D to chemical, 2.35.27
array, 2.25
3D/0D to 2D, 2.34.65.9
property prediction, 2.34.51.2
ICM object to PDB, 2.34.96
compress, 2.34.15
and reroot, 2.34.18.4
alignment, 2.34.15.1
chemical 3D, 2.37.82
binary, 2.34.15.4
and optmimize geometry, 2.37.83
conf, 2.34.15.3
comp, 2.34.18.1
grob, 2.34.15.2
comparison, 2.34.18.1
in place, 2.34.15.4
fragments, 2.34.18.2
objects, 2.34.15
mol, 2.34.18.3
stack, 2.34.15.3
object 3D and optmimize geometry, 2.37.85
compressed table view, 2.34.89.25
macro, 2.37.13
conditional buttons, 5.5.5
string, 2.35.156.7
to 3D, 2.34.89.8
ICM object, 2.37.86
data, 2.35.160.6
iarray, 2.35.166
confgen, 3.17
icm, 2.37.13
configuration, 2.38.14
icm-object, 2.34.18
file, 2.34.110.42
integer, 2.35.166
memory usage, 2.18.7
convert2Dto3D, 2.37.85
conformation comparison, 2.22.7
convert3Dto3D, 2.37.86
conformational ensemble, 2.34.7.7.2
convertObject, 2.37.13
converting a chemical, 2.34.18.3
interpolation, 2.34.23.6
alignment to table, 2.35.160.2
chemicals, 3.13.1.8
compression, 2.34.15.3
table columns into matrix, 2.35.90.6
file, 2.38.7
to, 2.35.123
transition, 2.37.38
cool, 2.37.40
conformer, 3.13.1.22
pictures, 2.23.5.30
cooling schedule, 2.19.46
conformers, 3.17
coordinates, 2.23.14.7
chains with alignments, 2.34.57
copy, 2.34.19
molcart, 2.34.16.1
chemical image, 2.23.9.15
consensus, 2.19.7
file, 2.21.26
site, 2.34.89.29
definitions, 2.23.1
correlation matrix, 2.35.163
consensusStrength, 2.19.7
covalent bound count, 2.35.137.3
conservation, 2.35.122.5, 2.35.136.8
neighbors, 2.35.101.1
constant, 2.5
covalently attached molecule, 2.35.101.1
constants, 2.5
contact areas, 2.35.90
create a covalent bond, 2.34.65.2
continue, 2.34.17
pharmacophore, 2.37.87
contour lines, 2.35.32
creating a local patch object, 2.34.18.2
surfaces, 2.23.7.5
credits, 4.5
contouring density, 2.34.65.14
crypt, 2.34.20
contrast, 2.23.5.33
crystal axis vectors, 2.35.16
conversion, 5.1.6
symmetry transformation, 3.10.2
to real array, 2.35.168
transformations, 2.35.176
occupancy, 2.35.107
atom, 2.34.22.7
symmetry intro, 1.4.2.4
bond, 2.34.22.14
crystallography, 2.35.129
boundary, 2.34.22.15
csv format, 2.34.84.44
chemical, 2.34.22.37
csym, 1.4.2.4
fragment, 2.34.22.37
cube, 2.23.14.2
selection, 2.34.22.37
current, 5.3.9
class, 2.34.22
map, 5.3.7
column table, 2.34.22.16
object, 5.3.8
conf, 2.34.22.17
working directory, 2.35.108
directory, 2.34.22.8
cursor action, 5.9.2.4
disulfide bond, 2.34.22.27
custom alignment color, 2.23.5.1
drestraint, 2.34.22.18
field, 2.34.89.52
element, 2.34.22.31
interaction, 2.34.90.38
file, 2.34.22.9
from array, 2.34.22.6
customization, 3.1.2
hydrogen, 2.34.22.11
environment, 2.33
label, 2.34.22.19, 2.34.22.20
chemical, 2.34.22.20
cyclic temperature protocol, 2.19.46
link, 2.34.22.21
cylinder, 2.23.14.2
map, 2.34.22.22
cz32, 4.5
molcart, 2.34.22.3
data visualization, 2.34.65.38
molecule, 2.34.22.13
database, 5.4.1
object, 2.34.22.12
browser, 2.34.63.3
parray, 2.34.22.36
connection, 2.34.16.1
element, 2.34.22.36
file, 3.5.1
peptide bond, 2.34.22.28
import, 2.34.65.26
plot, 2.34.22.4
date, 2.34.21, 2.35.156.2
salts, 2.34.70.3
array, 2.34.21
selection, 2.34.22.5
dcMethod, 2.22.8
selftether, 2.34.22.34
dcWeight, 2.19.8
sequence, 2.34.22.23
novo, 3.13.1.21
session, 2.34.22.10
shell object, 2.34.22.1
deep learning, 2.34.53
site, 2.34.22.24
defCell, 2.24.1
alignment, 2.34.22.26
defSymGroup, 2.18.2
sstructure, 2.34.22.25
default atom colors, 2.34.89.17
stack, 2.34.22.29
color of label, 2.19.11
object, 2.34.22.30
parameters, 2.22.1
system, 2.34.22.9
value, 5.8.2
table, 2.34.22.32
define axis, 3.10.3
rows, 2.34.22.32
defining space box, 2.35.21
term, 2.34.22.33
dehtml, 2.35.126.3
tether, 2.34.22.35
del, 2.34.22.9
tree, 2.34.22.36
delete, 2.34.22
variable, 2.34.22.6
3D graphics panel, 2.34.105
views, 2.34.22
alias, 2.34.22.2
backbone, 2.35.137.1
array element, 2.34.22.6
restraint, 2.34.22.18
index, 2.34.22.6
deleting, 2.34.22.26
selection, 2.34.22.1
sites by number, 2.34.22.24
string, 2.34.23.22
fitting, 2.22.8
surface, 2.34.23.20
area, 2.23.5.3
in unit cell, 2.34.65.23
tethers, 2.34.23.23
densityCutoff, 2.19.13
trajectory, 2.34.23.17
dependent columns, 2.34.1.1.1
volume, 2.34.23.24
window, 2.3, 2.34.23.25
depth-cueing, 2.19.17
desolvation, 2.22.25
averaging, 2.22.6
detecting bad covalent geometry, 2.34.90.12
proximity, 2.35.44.9
geometry, 5.4.4
diagram, 2.34.65.32
matrix, 2.35.160.5, 2.37.7
dialog generation, 2.35.11
between stack conformations, 2.35.90.11
in html documents, 2.34.44
restraint, 5.4.6
tables, 2.34.44
file, 2.38.9
scripting, 2.35.11
type file, 2.38.8
dielConst, 2.19.14
restraints, 2.34.89.23
dielConstExtern, 2.19.15
distances, 2.35.102.3
dielectric constant, 2.19.14
distribution, 1.3, 2.34.65.32
diff, 2.35.105
comparison, 2.35.136
dihedral, 2.37.4
disulfide bond, 5.4.5
angle, 2.34.65.19
diverse subset, 3.14.6.4
calculation, 3.3.10
dividing chemical into individual molecules, 2.35.154.4
dna to protein sequence translation, 2.35.175.1
display, 2.34.23
rna conversion, 2.35.138.1
GUI window, 2.34.23.26
translate, 2.35.175.1
box, 2.34.23.7
dockBatch, 3.13.1.7
dockScan, 3.13.1.18
contact, 2.34.65.16
docking, 2.37.89
drestraint, 2.34.23.9
intro, 3.13.1.5
field, 2.23.5.3
result viewing, 2.37.28
from script, 2.34.23.3
simple models, 3.14.3
gradient, 2.34.23.10
timing, 3.13.1.3
grob, 2.34.23.11
with template, 3.13.1.19
label, 2.34.23.12
docksub, 3.13.1.20
gui, 2.34.23.26
docksyb.icm, 3.13.1.20
hbond, 2.34.23.13
documents, 5.5.9
label, 2.34.23.15
dollar separated file, 2.34.84.44
map, 2.23.5.13, 2.34.23.16
dominant color, 2.35.29.2
model, 2.34.23.1
donor, 3.6.1
new, 2.34.23.2
plot intro, 1.4.3.2
off-screen, 2.34.23.3
dots, 2.34.78
offscreen, 2.34.23.3
dotted surface, 2.23.5.56
origin, 2.34.23.4
double click action, 5.9.2.4
ribbon, 2.34.23.18
drestraint, 2.34.90.18, 5.4.6
rotate, 2.34.23.5
generate from structure, 2.34.65.7
site, 2.34.23.19
global weight, 2.19.6
skin, 2.34.23.20
set, 2.34.89.23
slide, 2.34.23.21
type, 5.4.7
stack, 2.34.23.6
drop, 2.19.16
ds3D, 2.37.31
dsCellBox, 2.37.15
average, 3.7.5
dsChem, 2.37.17
entropy of alignment, 2.35.136.8
dsCustom, 2.37.18
atom, 2.34.18.4
dsPocket, 2.37.28
dsPropertySkin, 2.37.19
charge, 2.34.29
dsPrositePdb, 2.37.24
chiral, 2.34.30
library, 2.34.32
dsSeqPdbOutput, 2.37.26
tautomer, 2.34.31
dsSkinLabel, 2.37.27
enumeration, 2.35.27
dsStackConf, 2.37.29
eps files, 2.21.23
dsVarLabels, 2.37.30
equipotential surface, 2.35.32
dsXyz, 2.37.32
error SOAP services, 2.35.49
dump database, 2.34.110.7
ignoring, 2.21.25
dynamic gui, 5.5.5
error/warning bits cleanup, 2.34.10
ecepp, 5.5.1
errorAction, 2.22.10
edit, 2.34.24
vrestraint vs_var, 2.34.89.83
files, 2.23.14.1
evalSidechainFlex, 2.37.90
eigen value factorization, 2.35.45
evol tree intro, 1.4.3.5
eigendecomposition of a matrix, 2.35.45
evolutionary tree intro, 1.4.3.5
eigenvalues, 2.35.45
exact, 2.34.35.10, 2.34.35.11
eigenvectors, 2.35.45
match, 2.35.126.1
electro intro, 1.4.2.9
example scripts, 3.14
electroMethod, 2.22.9
excel, 2.34.84.44, 2.34.110.10
exit, 2.34.34
around selection, 2.19.25
exitSeslogStyle, 2.22.11
map generation, 2.19.1
expanding substructure match, 2.34.89.71
maps, 2.23.14.1
export, 2.34.110.7
electrostatic boundary matrix, 2.35.90.10
animation, 2.34.110.31
coloring, 2.23.14.6
pdb, 2.23.14.14
isopotential surfaces, 2.34.65.13
exporting sdf, 2.34.110.11
expression shortcuts, 2.10.1.2
solvation, 3.7.2
tags, 2.24.9
surface, 2.37.25
comparison, 2.14.5
troubleshooting, 5.7.13
arithmetics, 2.14.2
electrostatics, 2.23.14.6
assignment, 2.14.1
intro, 1.4.2.9
comparison, 2.14.5
elements, 2.23.9.16
logical, 2.14.3
ellipsoid, 2.35.163
extending to bonded hydrogens, 2.35.137.6
elseif, 2.34.25
terminal atoms, 2.35.137.6
empty model, 2.35.109
external process, 2.34.65.1
enamine, 3.18
extracting from Markush, 2.34.55
endfor, 2.34.26
icm script arguments, 2.35.59
endif, 2.34.27
stack from object, 2.34.63.5
endmacro, 2.34.28
ez25, 3.7
endwhile, 2.34.33
factor, 5.8.13
energetics, 3.7
false negatives, 2.35.136.5
function, 2.23.14.3
family, 2.34.89.39.1
profile, 2.37.84
faq, 1.3
terms, 2.17
cheminformatics, 3.14.6
mac gui preferences, 3.14.6.2
findSymNeighbors, 2.37.16
molcart dump, 3.14.6.3
find_related_sequences, 2.37.33
query, 3.14.6.1
finding long covalent bonds, 2.35.137.1
multiple chem overlay, 3.14.5.1
fingerprint, 2.35.41
residue table, 3.14.4.1
fingerprints, 2.9
fast Fourier transform, 2.34.65.24
to density, 2.22.8
sequence search, 2.34.35.3
fix, 2.34.36
fasta, 2.23.12.15, 5.5.2
fixed branches, 2.35.137.2
format, 2.34.110.1
flattening 3D molecule, 2.37.17
feature table, 5.8.6.1
flexible superimpose, 2.37.50
in sequences, 2.34.89.27
flow control, 2.15
ffMethod, 2.22.12
field, 2.34.89.36
color, 2.19.17
name, 2.35.99.2
fogStart, 2.19.17
file, 2.34.110.24
fold search, 5.8.4
exists, 2.35.50
foldbank.db, 2.38.3
list, 2.35.59
folding procedure, 3.14.1
length, 2.35.55
font, 2.34.58.1
object origin, 2.35.55
size, 2.34.89.39.1, 2.38.14
permissions, 2.35.55
sizes, 3.14.6.2
time modified, 2.35.55
specification, 2.34.89.39.1
type, 2.35.55
for, 2.34.37
files, 2.38
filling volume, 2.23.5.11
filter, 2.34.35.11, 2.34.63.3
formatdb, 2.34.110.25
functions, 5.5.4
fprintf, 2.34.39
filtering table rows, 5.5.4
fractional coordinates, 2.35.192.4
find, 2.34.35
to abs coordinates, 2.35.16
alignment, 2.34.35.1
and replace a chemical pattern, 2.34.70.1
fragmented molecule, 2.34.18.2
chemical fragment, 2.34.70
frame, 2.34.94, 2.34.110.31
chemical, 2.34.35.5
free starin, 2.35.136.3
pattern, 2.34.70
frozen dihedral, 2.34.66.1
substructure, 2.35.70.2
fullscreen, 2.34.89.86
fast, 2.34.35.3
columns, 2.34.1.1.1
family of commands, 2.34.35
functions, 5.1.1
in sarray, 2.35.70.8
selecting in objects, 2.8.10
gamess, 5.5.6
enumerate, 2.34.35.9
expansion, 2.35.146.4
molecule, 2.34.35.4
gapExtension, 2.19.18
motifs, 2.24.9
gapFunction, 2.24.3
pattern, 2.34.35.8
gapOpen, 2.19.19
pdb, 2.34.35.6
gaussian averaging, 2.35.146.2
pharmacophore, 2.34.35.12
gcMethod, 2.22.13
prosite, 2.34.35.7
genbank, 2.23.12.15
scaffold, 2.35.179
generalized arrays, 5.1.6
table, 2.34.35.11
generate intermediate conformers, 2.37.38
generating movie images, 3.9.2.1
findFuncZero, 2.37.35
genomics, 1.4.3.1
intro, 1.4.3.1
exists, 2.35.50
started, 1.7
functions, 5.5.5
getting data from outside, 2.32
panels, 2.34.105
started, 1.7
giga, 3.18
gvim text editor, 5.8.2
sized, 3.18
gzip files, 2.34.15.4
giga-sized, 3.18
ginger, 3.13.1.22
table, 5.3.6
global, 2.34.41
haze, 2.19.17
glossary, 5
hb, 2.19.21
go, 2.35.44.6
hbCutoff, 2.19.21
goto, 2.34.42
term, 2.19.20, 2.34.89.74
color, 2.34.23.14
gpWeights, 2.19.20
gpu, 3.13.1.23
energy, 2.34.23.14
graph matching, 2.35.133
list, 2.35.160.10
graphical box, 2.34.23.7
show, 2.34.90.24
row selection, 2.35.70.5
hbondMinStrength, 2.23.5.25
selection, 2.35.137.5
faq, 3.3.4
how to, 3.3.4
card, 2.23.5.52
header, 2.34.1.1
helical axis, 2.37.36
exists, 2.35.50
cylinders, 2.23.5.42
helicity, 3.7.6
learning, 3.2.1
content calculation, 3.7.6
attributes, 2.19.4
fogStart, 2.19.17
browser, 2.34.45.1
view vector, 2.34.89.81
commands, 2.34.45.3
graphviz, 2.35.160.7
functions, 2.34.45.4
greedy matching, 2.10.1.4
getting, 3.1.1
grid energy, 2.34.90.22
word, 2.34.45.2
potentials, 2.34.65.25
getting, 3.1.1
heterogenous environment, 2.23.14.2
coloring, 2.34.13
hidden blocks, 5.1.1.1
files, 2.38.10
display, 2.34.23.3
inside-out flip, 2.34.89.43
hydrogens, 2.23.5.32
normal directions, 2.34.89.43
stack in object, 2.34.94.2
vertex, 2.23.5.21
hierarchical, 2.13
translate, 2.34.103
highEnergyAction, 2.22.14
group, 2.34.43
his-tags, 2.35.180
by column, 2.34.43.4
histogram, 2.34.65.32
column, 2.34.43.4
2D, 2.35.90
rename of table columns, 2.34.85.1
history, 2.34.46, 2.34.110.40
replacement, 2.34.68
delete, 2.34.22.10
select of table columns, 2.34.88.2
of ICM, 1.2
sequence, 2.34.43.1
hitlist, 3.13.1.17
unique, 2.34.43.2
homodel, 2.37.41
table, 2.34.43.3
grouping table by a column, 2.34.89.25
faq, 3.14.4
output, 2.34.7.7.3
shell, 3.1
steps, 2.34.7.7.1
functions, 2.36
to export a molcart table, 3.14.6.3
support, 1.3
table, 2.23
document order, 2.34.89.41
ali, 2.38.31
tag removal, 2.35.126.3
all, 2.38.32
html-formatted text, 5.5.9
bbt, 2.38.5
html5, 2.11
bst, 2.38.6
hue, 2.35.90.4
cfg, 2.38.14
clr, 2.38.15
parameters, 2.38.13
cmp, 2.38.33
cn, 2.38.9
bonding parameters, 2.38.12
cnf, 2.38.7
cutoff, 2.19.21
cnt, 2.38.8
bonds, 2.35.102.3
cod, 2.38.4
display, 2.23.5.32
col, 2.38.24
placement, 2.34.89.26
gro, 2.38.10
hydrophobicity profile, 3.3.12
gui, 2.33
iSee, 5.8.14
hbt, 2.38.12
i_2out, 2.18.4
hdt, 2.38.13
i_out, 2.18.3
htm, 2.38.11
iar, 2.38.35
making, 2.35.66.1
lps, 2.34.7.7.2
icb files, 5.8.14
map, 2.38.16
GUI, 2.34.89.41
mat, 2.38.37
algorithms, 4.3
ob, 2.38.18
application refs, 4.4
pdb, 2.38.28
literature, 4.3
prf, 2.38.34
archive, 2.34.84.2
rar, 2.38.38
arguments, 2.35.59
res, 2.38.20
binary, 2.35.108
rs, 2.38.23
branching, 2.15.2
rst, 2.38.22
commands, 2.34
sar, 2.38.36
controls, 2.15
se, 2.38.30
flags, 2.1
seq, 2.38.29
functions, 2.35
tab, 2.38.25
graphics, 3.2
tot, 2.38.26
history, 1.2
trj, 2.38.17
jumps, 2.15.3
var, 2.38.21
learning, 3.1.4
vwt, 2.38.27
loops, 2.15.1
icmCavityFinder, 2.37.14
macros, 2.37
icmMacroShape, 2.37.88
main refs, 4.2
icmPmfProfile, 2.37.23
menus, 2.23.10.1
icmPocketFinder, 2.37.89
method literature, 4.4
icmscript, 2.34.84.4
molecules, 2.16
arguments, 2.35.59
object, 2.37.13
if, 2.34.47
file, 2.38.18
ignoring swiss secondary structure, 2.24.10
preferences, 2.22.1
illegal smiles, 2.35.70.2
session, 2.22.11
image, 3.2.6
center, 3.2.8
italic, 2.34.89.39.1
format, 5.9.3
iterative overlay, 2.34.97
high quality, 3.2.2
parray, 5.7.3.3
javascript, 2.11
resolution, 3.2.2
join, 2.34.50
rotation, 3.2.3
tables, 2.34.50
implicit continuous solvation, 2.38.13
keep, 2.34.49
solvation, 2.34.89.73
kernel models quality, 2.35.136.5
imposing tether, 2.34.89.69, 2.34.89.70
mapping, 2.38.15
place, 2.14.4
kmz, 5.5.3
ops, 2.14.4
l_antiAlias, 2.20.1
incidence, 2.35.90.13
l_autoLink, 2.20.2
increasing the number of shell variables, 2.38.14
l_bpmc, 2.20.3
increment charge, 2.34.89.10
l_breakRibbon, 2.20.4
index expressions, 2.6
l_bufferedOutput, 2.20.5
in array, 2.35.70.4
l_bug, 2.20.6
substring, 2.35.70.3
l_caseSensitivity, 2.20.7
table, 2.34.110.24
l_commands, 2.20.8
entry, 2.35.135.1
l_confirm, 2.20.9
sdf-file path, 2.35.108
l_easyRotate, 2.20.10
indices of labeled table rows, 2.35.70.6
l_info, 2.20.11
selected table rows, 2.35.70.5
l_minRedraw, 2.20.12
infinity, 2.35.168
l_neutralAcids, 2.20.13
info, 2.34.48
l_out, 2.20.14
molcart, 2.34.48.1
l_print, 2.20.15
inner join, 2.34.50
l_racemicMC, 2.20.16
insert rows, 2.34.1.4
l_readMolArom, 2.20.17
integer, 5.6.2
l_showAccessibility, 2.20.18
l_showMC, 2.20.19
output, 2.18.4
l_showMinSteps, 2.20.20
shell variables, 2.18
l_showResCodeInSelection, 2.20.21
intensity, 2.35.90.4
l_showSites, 2.20.23
interaction cutoff, 2.20.27
l_showSpecialChar, 2.20.22
l_showSstructure, 2.20.24
interactive docking, 1.4.2.8
l_showTerms, 2.20.26
l_showWater, 2.20.25
potential, 2.34.89.52, 2.34.90.38
l_updateLists, 2.20.27
interface comparison, 2.34.14.3
l_warn, 2.20.28
residues, 3.3.5
l_wrapLine, 2.20.29
torsions, 3.3.7
l_writeStartObjMC, 2.20.30
view, 2.37.28
l_xrUseHydrogen, 2.20.31
intermolecular bond, 2.34.72.3
label, 2.34.23.22, 5.6.3
internal coordinate file, 2.38.21
fonts, 2.38.15
coordinates, 2.8.9
large text, 2.34.84.40
positional restraints, 5.9.4
latent, 2.35.102.6
interplanar angle, 2.37.4
interpolate, 2.35.29.1
ann, 2.34.53
interpolation, 2.35.29.1
atom, 2.34.51.1
interruptAction, 2.22.15
chemical, 2.34.51.2
inverting array order, 2.35.66.2, 2.35.122.2
left join, 2.34.50
loadEDSweb, 2.37.43
ligand based screening, 3.15
local, 3.5.1
binding, 2.37.28
logarithm, 2.35.85
logical, 5.6.4
intro, 1.4.2.6
operations, 2.14.3
editing, 1.4.2.8
variables, 2.20
editor, 2.37.37
logical_ops, 2.14.3
fit, 3.13
logicals, 2.20
view, 2.23.5.31
long axes, 2.35.163
ligand-based, 3.18
loop database rebuilding, 2.34.110.28
ligandAIDE, 3.13.1.21
interrupt, 2.19.47
light, 2.23.5.34
library, 2.34.7.7.2
lightness, 2.35.90.4
modeling, 1.4.2.3
limits, 2.38.14
intro, 1.4.2.3
line thickness, 2.23.12.5
search, 2.34.7.7.2
in 2D chemicals, 2.23.9.14
resolution shape, 2.37.88
lineWidth, 2.19.22
lower case, 2.35.167
linear chemical notation, 2.26
ma29, 3.11
regression, 2.35.84
grob, 2.34.54
macro_def, 5.6.5
group, 2.34.55
main ICM references, 4.2
internal variables of molecular object, 2.34.56
concepts, 3.10.1
ms2ali, 2.34.57
make, 2.34.65
sequences to 3D objects, 2.34.57
3d label, 2.34.65.15
to alignment, 2.34.57
angle, 2.34.65.18
variable, 2.34.56
background, 2.34.65.1
variables, 2.34.56
blast index, 2.34.110.25
linked alignment, 2.35.99
bond, 2.34.65.2
sequence, 2.35.99
chain, 2.34.65.3
multi, 2.34.65.3
list, 2.34.58
boundary, 2.34.65.4
binary, 2.34.59
directory, 2.34.65.5
database, 2.34.60
distance, 2.34.65.16
directory, 2.34.61
disulfide bond, 2.34.65.6
font, 2.34.58.1
drestraint, 2.34.65.7
html documents, 2.35.99
factor, 2.34.65.8
molcart, 2.34.62
flat, 2.34.65.9
database, 2.34.62
chem_array, 2.34.65.9
of files, 2.35.135
grob, 2.37.36
updates, 2.34.66
from image, 2.34.65.11
listUpdateThreshold, 2.19.23
matrix, 2.34.65.12
literature, 4.1
image, 2.34.65.11
load, 2.34.63
map, 2.34.65.10
conf, 2.34.63.1
matrix, 2.34.65.12
frame, 2.34.63.2
potential, 2.34.65.13
molcart, 2.34.63.3
skin, 2.34.65.14
object, 2.34.63.6
hbond, 2.34.65.17
solution, 2.34.63.4
image, 2.34.65.20
stack object, 2.34.63.5
index fasta, 2.34.84.24, 2.34.110.24
loadEDS, 2.37.42
key, 2.34.65.21
cell, 2.34.65.23
factor, 2.34.65.24
matching chemicals, 2.35.70.2
potential, 2.34.65.25
hydrogens, 2.34.89.71
xray, 2.34.65.31
matrix, 5.6.7
molcart, 2.34.65.26
derivatives, 2.35.80
molsar, 2.34.65.27
new, 2.35.90.1
pca, 2.34.65.29
plot, 2.35.32
peptide bond, 2.34.65.30
map value, 2.35.91
plot, 2.34.65.32
reaction, 2.34.65.33
maxMemory, 2.18.7
sequence, 2.34.65.35, 2.34.65.36
movie, 3.9.2
alignment, 2.34.65.34
mcBell, 2.19.26
from alignment, 2.34.65.34
mcJump, 2.19.27
random, 2.34.65.36
mcShake, 2.19.28
torsion, 2.34.65.19
mcStep, 2.19.29
tree, 2.34.65.37
mean force, 2.34.89.52, 2.34.90.38
object, 2.34.65.38
median value, 2.35.93
unique, 2.34.65.39
makeAxisArrow, 2.37.36
memorizing positions, 3.2.4
makeIndexChemDb, 2.37.44
menu, 2.34.67
makeIndexSwiss, 2.37.45
script, 3.1.3
makePdbFromStereo, 2.37.46
merge PDB, 2.37.92
makePharma, 2.37.87
arrays to table, 2.34.43.3
makeSimpleDockObj, 2.37.47
continuation lines, 2.34.84.39
makeSimpleModel, 2.37.48
objects, 2.34.72.2
making predictive models, 2.34.51
parts of molecule, 2.34.72.3
manual style, 1.5
pdb, 3.4.4
sarray into string, 2.35.158
aa property to sequence, 2.35.122.1
stacks, 3.7.7
averaging, 2.35.146.5
calculation, 2.34.65.24
merge2, 3.8.7
conversion, 2.34.65.31
mergePdb, 2.37.92
file, 2.38.16
several chemical, 2.35.158.1
fitting, 2.22.8
merging into one molecule, 2.34.72.3
format, 5.6.6
mean value, 2.35.94
point radius, 2.23.5.21
min value, 2.35.95
score, 3.13.1.12
name, 2.35.86
mfMethod, 2.22.16
operations, 5.6.6
mfWeight, 2.19.30
transformations, 2.35.146.5
mimel, 5.6.8
trimming, 2.35.22
mimelDepth, 2.19.31
value sigma, 2.35.133
mimelMolDensity, 2.19.32
on atoms, 2.34.89.37
minNumGrad, 2.34.66
contouring, 2.34.65.14
minTetherWindow, 2.18.8
mapAtomMargin, 2.19.25
minimization exit criteria, 2.34.66
mapSigmaLevel, 2.19.24
mapping chemical equivalences, 2.35.70
cartesian, 2.34.66.2
properties to sequence, 2.35.122.4
loop, 2.34.66.3
and factors, 3.11
quantum, 2.34.66.1
margin, 2.23.6.1
stack, 2.34.66.4
drop, 2.19.16
views, 1.4.1.1
minimizeMethod, 2.22.17
volume, 2.35.114
missing bonds, 2.34.72.3
create, 3.8.4
residues, 2.35.54.1
properties, 2.34.89.35
triangles, 2.35.189
rotation, 3.2.3
mkUniqPdbSequences, 2.37.49
mlr, 2.34.52
create, 1.7.2
mm26, 3.8
mmcif, 5.6.10
sort/reorder, 2.34.91.5
mmff, 5.6.9
selecting, 2.8.6
type, 2.35.182
show atom types, 2.34.90.11
monte carlo, 2.34.71
mnSolutions, 2.18.9
mncalls, 2.18.10
local, 2.18.16
mncallsMC, 2.18.11
trajectory, 2.34.23.17
mnconf, 2.18.12
moprphing, 2.37.38
mnhighEnergy, 2.18.13
more, 5.6.13
mnreject, 2.18.14
morph, 2.34.23.6
mnvisits, 2.18.15
to tether target, 2.37.38
model reliability, 2.37.23
morph2tz, 2.37.38
modify, 2.34.68
and reroot, 2.34.18.4
mouse controls, 2.3
chem, 2.34.70
file, 2.34.110.31
charge, 2.34.70.2
move, 2.34.72
delete salt, 2.34.70.3
alignment sequence, 2.34.72.7
normalize, 2.34.70.4
atoms, 2.34.89.3
chemical column, 2.34.70.3
bonding, 2.34.72.3
find replace, 2.34.70.1
column, 2.34.72.5
molcart, 2.34.70.5
element, 2.34.72.4
rotate, 2.34.69
modifyGroupSmiles, 2.37.37
fragments together, 2.34.72.3
modules, 1.4.4
ligand out, 2.34.92.6
molecule, 2.34.72.1
file, 2.35.156.3
ms_molecule, 2.34.72.1
to icm, 2.34.18.3
multiple molecules, 2.34.72.2
translation, 3.2.4
object, 2.34.72.2
mol-file to chem-table element, 2.35.109
plane, 2.34.72.6
mol-format, 2.23.14.7
sequence, 2.34.72.7
mol2, 5.6.12
table column, 2.34.72.5
movie, 2.34.94.3
connection options, 3.5.2
images by frame, 3.9.2.2
molecular simulation, 3.9.2
arrays, 5.7.3
rotate view, 3.9.1
dynamics, 3.19
zooming, 3.9.1
manipulations, 3.8
moving grobs with molecules or objects, 2.34.54
modifications, 3.8.5
selection to another object, 2.35.137.8
object, 5.7.1
mpeg, 2.34.110.31
objects, 2.16
ms_, 2.8.6
multi center drestraint, 2.22.6
multicore, 2.35.70.1
multiline input, 2.34.84.5
in table, 2.35.109
multiple NMR models, 2.23.14.5
parray, 5.7.3.1
alignment, 2.34.3.3
properties, 2.34.89.35
to pairwise similarities, 2.37.7
stack, 5.8.9
conformation storage, 5.8.9
to chemarray, 2.35.27
user fields, 2.35.54.1
linear regression, 2.34.52
assign comment, 2.34.89.18
mol as text, 2.35.156.3
source file, 2.35.55
object file, 2.34.84.2
translate, 2.34.103
sequence alignment intro, 1.4.3.4
merge, 3.8.6
smiles file format, 2.34.84.46
selecting, 2.8.5
multiprocessor, 2.34.38
obsolete, 2.19.54
mutate residue, 2.34.68
occlusion shading, 2.34.13
mutating residue, 3.8.5
octanol transfer, 2.35.114
mute, 5.6.15
off, 2.34.84.22
mysql, 2.34.16.1
format, 5.5.3
nLocalDeformVar, 2.18.16
oligonucleotide melting, 2.35.164
nProc, 2.18.18
nSsearchStep, 2.18.17
third, 2.35.37
name, 2.35.79
only, 5.7.2
atom fields, 2.34.89.35
ontology, 2.35.44.6
naming compounds, 2.34.89.48
openGL window, 2.34.105
nearest sequence, 2.35.95
neato, 2.35.160.7
optimal chemical superposition, 3.14.5.1
neighbor joining, 2.34.65.38
optimization, 2.34.71
neighbors, 2.35.151
Hbond, 2.37.91
nested script, 5.8.2
hydrogen bond, 2.37.91
neural network, 2.34.53
optimizeHbonds, 2.37.91
real array, 2.35.122
or, 2.14.3
nice, 2.37.39
image, 3.2.2
original sequence names, 2.23.12.15
non-redundant, 3.4.3
os_, 2.8.5
normal distribution, 2.35.121
other variables, 2.24
normalize chemicals, 2.34.70.4
out-of density atoms, 2.34.90.22
defined, 2.35.168
output, 2.18.3
nota, 1.5
outside penalty, 2.23.6.1
notational conventions, 1.5
overlap, 2.35.70.10
nproc, 2.34.38
by atom pairs, 2.34.97
nucleotides, 2.21.24
chemical substructure, 2.37.22
number, 2.18.18
overview, 1.4
of dots, 2.23.5.55
pK shift, 3.7.3
elements, 2.35.102
hydrogen bonds, 2.34.90.24
model, 2.34.89.13
molecules in objects, 2.35.137.4
packing density, 3.3.8
occurrences, 2.35.102
pair-distances, 2.34.22.6
residues in molecules, 2.35.137.4
pairdistance parray, 2.23.5.24
van der Waals contacts, 2.34.90.13
pairwise interactions, 2.34.89.52
transfer from sequence, 2.34.3.2
panel layout, 2.23.8.6
nvis, 2.35.66.6
paragraphs, 2.34.110.24
computing, 2.35.70.1
histogram, 3.12.2
processing, 2.34.38
how to, 3.12
parallelization, 2.35.70.1
simple, 3.12.1
parameter list file, 3.14.6.2
plot2DSeq, 2.37.51
plotBestEnergies, 2.37.54
parrayTo3D, 2.37.83
plotCluster, 2.37.56
parrayToMol, 2.37.82
plotFlexibility, 2.37.55
parse SOAP message, 2.35.186
plotMatrix, 2.37.57
parsing, 2.35.89
plotRama, 2.37.58
web pages, 2.34.84.47
plotRose, 2.37.59
partial least squares, 2.34.51
plotSeqDotMatrix, 2.37.52
slide display, 2.34.23.21
plotSeqDotMatrix2, 2.37.53
sum, 2.35.77
plotSeqProperty, 2.37.60
passing arguments, 5.8.2
3d, 1.4.3.7
by reference, 2.34.64
plotting van der Waals, 3.7.1
pattern, 5.7.4
faq, 3.7.1
search, 2.34.35.2
pls, 2.34.51
pause, 2.34.73
column contributions, 2.35.160.8, 2.35.160.9
model, 2.35.160.8, 2.35.160.9
file creation time, 2.35.38
weights, 2.35.160.8, 2.35.160.9
files, 2.38.28
pmf, 2.22.16
format, 2.34.84.48
residue profile, 2.37.23
merge, 3.4.4
pmf-file, 2.38.19
sequence generation, 3.4.3
pmffile, 2.38.19
pdbDirStyle, 2.22.18
peptide, 5.7.7
docking, 3.12.5
point coordinates, 2.35.192.1
folding, 1.4.2.1
size, 2.23.5.21
intro, 1.4.2.1
pointer array, 5.7.3
personal gui controls, 3.1.2
polar hydrogens, 2.23.5.32
setup, 3.1.2
surface area, 2.35.114
ph30, 3.12
ph4, 5.7.8
positional constraint, 2.23.14.12
object faq, 3.6.1
postscript, 2.21.23
potential surface, 2.23.14.6
faq, 3.6
coloring, 5.7.13
grid type definitions, 2.34.89.74
pov-ray, 2.34.110.38
object, 3.6.1
pow, 2.35.37
objects, 3.6
precision, 2.35.136.5
pharmacophores, 3.6
predict, 2.34.76
psi plot, 2.37.58
predictSeq, 2.37.61
pipe, 2.27, 2.34.84.43
prediction model, 2.35.84
piping, 2.27
quality, 2.35.136
placeLigand, 2.37.50
score, 2.35.136
planar angle, 2.34.65.18
predictive models, 2.34.51.2
plot, 2.34.65.32, 2.34.74
preference, 2.22
3D 2Dfunction, 3.12.3
system, 2.22.1
shape, 3.12.4
preferences, 3.1.2.3
area, 2.34.75
prepSwiss, 2.37.62
grid line width, 2.23.12.5
previous atom, 2.35.101.1
component analysis, 3.3.9
van der Waals, 2.35.120
inertia moments, 2.35.88
rainbow, 2.35.29.1
print, 2.34.77
ramachandran faq, 3.3.3
bar, 2.34.78
how to, 3.3.3
image, 2.34.80
random array, 2.35.121
to string, 2.34.93
order, 2.35.139
printMatrix, 2.37.63
sequence, 2.34.65.36
printPostScript, 2.37.64
randomSeed, 2.18.19
printTorsions, 2.37.65
printf, 2.34.79
angles, 2.34.83.1
problem, 3.14.6.2
coordinates, 2.34.83
processors, 2.18.18
torsions, 2.34.83
profile, 2.35.136.3, 5.7.9
program overview, 1.4
properties, 2.35.122.4
progress bar, 2.34.78
rdBlastOutput, 2.37.68
progression, 2.34.78
rdSeqTab, 2.37.69
project setup, 3.13.1.6
reaction, 2.34.65.33
projected alignment, 2.35.99.3
group file, 2.34.55
projecting surface charge, 3.7.2
FILTER, 2.34.84.6
grids, 2.19.20
alignment, 2.34.84.12
map, 2.34.89.74
all, 2.34.84.7
superposition, 2.34.89.74
binary, 2.34.84.2
prosite, 5.7.10
blob, 2.34.84.38
pattern, 5.7.4
color, 2.34.84.13
protac, 3.16
column, 2.34.84.51
protein docking, 2.35.192.3
comp_matrix, 2.34.84.14
intro, 1.4.2.5
conf, 2.34.84.15
engineering, 2.24.9
csd, 2.34.84.16
grid docking, 3.14.2
csv, 2.34.84.44
health, 2.37.58
database, 2.34.84.17
topology, 2.23.5.42
drestraint, 2.34.84.18
protonation states table, 2.35.160.11
type, 2.34.84.19
psa, 5.7.12
entries from database, 2.34.84.8
factor, 2.34.84.20
purple box, 2.35.21
file by chunk, 2.34.84.40
qstat, 3.13.1.20
from file, 2.34.84.1
qsub, 3.13.1.20
string, 2.34.84.5
quadratic equation, 2.35.147
fromstring, 2.34.84.5
quantum chemistry, 5.5.7
ftp http, 2.34.84.9
gamess, 2.34.84.21
qubic equation, 2.35.148
grob, 2.34.84.22
query, 3.14.6.1
gui, 2.34.84.3
molcart, 2.34.81
html, 2.34.84.4
question mark operator, 2.35.156.7
file, 2.34.84.4
quit, 2.34.82
iarray, 2.34.84.23
property transfer via alignment, 2.35.122.3
index, 2.34.84.24
r_2out, 2.19.34
table, 2.34.84.8
r_out, 2.19.33
json, 2.34.84.57
radii.electrostatic, 2.35.120
library, 2.34.84.25
librarymmff, 2.34.84.26
map, 2.34.84.27
rebuild molcart index, 2.34.7.11
matrix, 2.34.84.28
recalculate dependent values, 2.34.7.2
menu file, 2.34.84.3
values, 2.34.1.1.1
receptor, 3.13.1.1
mol2, 2.34.84.8, 2.34.84.30
preparation, 3.13.1.1
object, 2.34.84.32
redefine hydrogen coordinates, 2.34.89.26
parray, 2.34.84.32.1
references, 4
refineModel, 2.37.66
sequence, 2.34.84.34
reflections, 2.23.5.33
profile, 2.34.84.35
refresh view, 2.34.23.2
prosite, 2.34.84.36
refs, 4.1
rarray, 2.34.84.37
sarray, 2.34.84.39, 2.34.84.40
back references, 2.10.1.3
sequence, 2.34.84.8, 2.34.84.41
syntax, 2.10.1
database, 2.34.84.41.1
regression, 2.34.51
smiles, 2.34.84.46
regul, 2.37.67
stack, 2.34.84.42
string, 2.34.84.43
filter, 2.34.84.1
table, 2.34.84.44
expression, 2.35.126.3
chunk, 2.34.84.45
csv, 2.34.84.44
procedure, 3.8.3
html, 2.34.84.47
rejectAction, 2.22.19
mmcif, 2.34.84.48
relational database, 2.35.149
mol, 2.34.84.50
relative accessible area of atoms, 2.22.2
mol2, 2.34.84.49
release notes, 1.1
text, 2.34.84.40
remarkObj, 2.37.70
trajectory, 2.34.84.31
remove columns, 2.34.22.16
and save a fragment, 2.34.84.31.1
expression tags, 2.35.180
write, 2.34.84.31.1
file, 2.34.22.9
unix, 2.34.84.10
trailing blanks, 2.35.178
cat, 2.34.84.11
removing html tags, 2.34.84.47
variable, 2.34.84.52
outliers, 2.35.178
view, 2.34.84.53
vrestraint, 2.34.84.54
chemicals, 2.34.89.48
type, 2.34.84.55
column table, 2.34.85.1
with filter, 2.34.84.6
file, 2.34.85.3
xml, 2.34.84.56
molcart, 2.34.85.2
readMolNames, 2.24.11
system, 2.34.85.3
readcomp_matrix, 2.34.84.14
renaming, 2.23.12.15
reading external tool output, 2.34.65.1
reorder, 2.34.72.7
from standard input, 2.34.84.43
alignment sequences, 2.34.110.1
pdb from ftp, 2.21.18
array, 2.35.139
web, 2.21.19
columns by function, 2.34.91.3
restraint, 2.34.84.54
objects, 2.34.91.4
replace matching array element, 2.35.126.1
array, 5.7.11
without interpretation, 2.35.126.2
shell variables, 2.19
replacing scaffold in a library, 2.34.70.1
space refinement, 2.34.65.31
reproducible randomness, 2.18.19
reals, 2.19
reroot, 2.34.18.4
resLabelShift, 2.19.35
ride, 3.18
resLabelStyle, 2.22.20
ridge, 3.13.1.23
reserved names, 2.24
right join, 2.34.50
rigid chemical superposition, 2.34.97
accumulators, 2.35.63
ring, 2.35.130
alignment, 2.34.89.69, 2.34.89.70
center coordinates, 2.35.192.2
conservation, 2.35.122.5
sampling, 3.17
contact area matrix, 2.35.90.8
templates, 2.34.89.8
areas, 2.35.7.1
rm, 2.34.22.9
field, 2.34.89.35
rocking, 2.34.23.5
root mean square deviation, 2.35.136.5
library file, 2.38.20
rotate, 2.34.87
name, 2.35.79
2D-chem in a table column, 2.34.87.4
translation, 2.23.14.14
chem, 2.34.87.4
number, 2.35.66.5
grob, 2.34.87.2
table, 2.35.160.3
object, 2.34.87.1
property averaging, 2.35.146.3
view, 2.34.87.3
calculation, 2.35.63
rotation, 2.34.23.5
proximity, 2.35.90.8
angle, 2.35.17
ranges, 2.8.11
rounding, 2.35.122
selection, 2.20.21
a real, 2.35.156
as string, 2.35.156.8
output, 2.34.90.46
function, 2.35.127
rsWeight, 2.19.36
table, 3.14.4.1
rs_, 2.8.7
tethering, 2.34.89.69, 2.34.89.70
ruler, 2.19.10
user field, 2.35.54.1
script, 2.34.8
residue_selections, 2.8.11
running a docking job, 3.13.1.18
selecting, 2.8.7
dock job, 3.13.1.9
resizing, 2.35.68
script from html, 5.8.2
resorting nodes edges, 2.35.160.7
s-s bond, 5.4.5
restore, 3.14.6.2
s_alignment_rainbow, 2.21.1
defaults, 2.34.85.4
s_blastdbDir, 2.21.2
preference, 2.34.85.4
s_editor, 2.21.3
restraining molecules to shapes, 2.23.14.12
s_entryDelimiter, 2.21.4
restraint, 3.19
s_errorFormat, 2.21.5
s_fieldDelimiter, 2.21.6
torsion, 2.34.89.82
s_helpEngine, 2.21.7
return, 2.34.86
s_icmPrompt, 2.21.10
reverse complement, 2.35.138.2
lighting, 2.34.89.43
s_imageViewer, 2.21.11
normals, 2.34.89.43
s_inxDir, 2.21.9
reversing order, 2.35.66.2
s_javaCodeBase, 2.21.12
s_labelHeader, 2.21.13
matrix, 2.35.29
s_lib, 2.21.14
ribbon, 5.7.18
s_logDir, 2.21.15
bullets, 2.23.5.7
s_out, 2.21.16
s_pdbDir, 2.21.17
ribbonColorStyle, 2.22.21
s_pdbDirFtp, 2.21.18
ribbonStyle, 2.22.22
s_pdbDirWeb, 2.21.19
s_projectDir, 2.21.20
searchSeqProsite, 2.37.77
s_prositeDat, 2.21.22
searchSeqSwiss, 2.37.78
s_psViewer, 2.21.23
searches and alignments, 3.4
s_reslib, 2.21.24
second moments, 2.35.163
s_skipMessages, 2.21.25
secondary structure derivation from 3D, 2.34.5.1
s_sysCp, 2.21.26
schematic, 2.23.5.42
s_sysLs, 2.21.27
segMinLength, 2.18.20
s_sysMv, 2.21.28
segment, 5.8.4
s_sysRm, 2.21.29
select, 2.34.88
s_tempDir, 2.21.30
atoms by number of bonded atoms, 2.35.137.3
s_translateString, 2.21.31
of the fixed torsions, 2.35.137.2
s_userDir, 2.21.32
based on alignment, 2.35.137.14
s_usrlib, 2.21.33
bfactor, 2.35.137.7
s_webEntrezLink, 2.21.34
center of mass, 2.35.137.15
s_webViewer, 2.21.35
coordinates, 2.35.137.7
s_xpdbDir, 2.21.36
iarray, 2.35.137
sa23, 3.3
length, 2.35.137.13
sampling grid, 2.35.192.3
occupancy, 2.35.137.7
user field, 2.35.137.7
transformation in place, 2.34.102.1
chemical, 2.34.88.1
save preferences, 2.34.110.42
column table, 2.34.88.2
print, 3.2.6
lines, 2.34.84.1
sdf file, 2.34.110.11
tether partners, 2.35.137.12
saving graphics to album, 2.34.65.20
vw partners, 2.35.137.12
image, 2.34.110.36
selectMinGrad, 2.19.37
scaffold, 2.35.178
selectSphereRadius, 2.19.38
scaffolds, 2.34.55
selected stack conformations, 2.34.22.17
scanMakeHitlist, 3.13.1.17
selecting by b-factor, 2.35.137
scoring, 3.13.1.4
y z, 2.35.137
screen X, 2.35.190
columns, 5.9.1
coordinates, 2.35.190
from clusters, 3.14.6.4
neighboring elements, 2.35.101
file name, 2.35.55
residues, 3.3.6
inside ICM, 5.8.2
saving, 2.35.66.4
name, 5.8.2
image generation, 2.34.23.3
elements, 2.8.4
scripting molecular movements, 3.2.4
examples, 2.8.3
functions, 2.8.10
gap patching, 2.35.137, 2.35.137.11
to chem-table, 2.35.109
search for chemical pattern, 2.35.56.3
levels, 2.8.2
pdb headers, 3.4.5
simplification, 2.35.137.11
prosite, 3.4.1
transfer, 2.35.137, 2.35.156.8
sequence pattern, 2.34.35.8
type, 2.8
searchObjSegment, 2.37.73
types, 2.8.1
searchPatternDb, 2.37.71
variable, 2.24.12
searchPatternPdb, 2.37.72
atoms, 2.8.8
searchSeqDb, 2.37.74
functions, 2.8.10
searchSeqFullPdb, 2.37.76
molecules, 2.8.6
searchSeqPdb, 2.37.75
objects, 2.8.5
residues, 2.8.7
type, 2.34.89.6
torsions, 2.8.9
and formal charges, 2.34.89.7
variables, 2.8.9
cartesian, 2.34.89.8
selections, 2.34.89.35
chain, 2.34.89.9
in molecular objects, 2.8
charge, 2.34.89.10
selftether, 2.23.14.12, 5.9.4
formal, 2.34.89.12
seq_ali_project, 2.35.156.6
auto, 2.34.89.13
mmff, 2.34.89.14
quantum, 2.34.89.11
intro, 1.4.3.3
chargemmff, 2.34.89.14
analysis intro, 1.4.3
chiral, 2.34.89.15
assembly, 2.34.43.2
chemical, 2.34.89.16
belongs to alignment, 2.35.70
color, 2.34.89.17
conservation, 2.35.136.8
comment, 2.34.89.18, 2.34.89.19
distance, 2.35.137
sequence, 2.34.89.20
matrix from alignment, 2.35.90.9
comp_matrix, 2.34.89.21
dotplot, 1.4.3.2
current map, 2.34.89.46
from alignment, 2.34.22.23
object, 2.34.89.49
pdb, 2.34.65.35
directory, 2.34.89.22
drestraint, 2.34.89.23
intro, 1.4.3
type, 2.34.89.24
modification, 2.35.180
electrostatic radii, 2.34.89.80
neighbor, 2.35.99.3
error, 2.34.89.34
parray, 5.7.3.2
field, 2.34.89.35
pattern, 5.7.4
alignment, 2.34.89.36
position correspondence, 2.35.160.3
map, 2.34.89.37
positional weights, 2.34.89.1
name, 2.34.89.38
redundancy removal, 2.34.43.2
font, 2.34.89.39
search, 2.34.35.2
grob, 2.34.89.40
selection, 2.34.22.23
foreground, 2.34.89.41
structure alignment, 2.36.1
format, 2.34.89.42
to alignment transfer, 2.35.122.3
grob, 2.34.89.43
type, 5.8.3
coordinates, 2.34.89.43
sequence-alignment mapping, 2.35.156.5, 2.35.156.6
label, 2.34.89.43
sequence-structure alignment, 2.35.5.1
group, 2.34.89.64
column, 2.34.89.25
sequenceBlock, 2.18.21
hydrogen, 2.34.89.26
sequenceColorScheme, 2.22.23
key, 2.34.89.44
sequenceLine, 2.18.22
label, 2.34.89.45
sequences, 3.4
3d label, 2.34.89.45.4
not in alignments, 2.34.22.23
chemical, 2.34.89.45.3
set, 2.34.89
distance, 2.34.89.45.1
alternative atom, 2.34.89.19
table, 2.34.89.45.2
area, 2.34.89.1
map, 2.34.89.46
atom, 2.34.89.3
molcart, 2.34.89.47
ball label, 2.34.89.2
molecular variables, 2.34.89.84
background image, 2.34.89.4
name, 2.34.89.48
bfactor, 2.34.89.5
sequence, 2.34.89.48.1
biological symmetry, 2.34.89.65
object, 2.34.89.49
bond topology, 2.34.89.7
occupancy, 2.34.89.50
pmf, 2.34.89.52
xstick, 2.34.89.87
radii, 2.34.89.87
alignment, 2.34.89.56
setResLabel, 2.37.80
chemical view, 2.34.89.55
setcomp_matrix, 2.34.89.21
column, 2.34.89.54
seticmff, 2.37.79
radii graphical, 2.34.89.87
setting conf properties, 2.34.89.62
randomSeed, 2.34.89.57
setvs_var, 2.34.89.84
randomize, 2.34.89.57
sf-term, 2.34.89.73
resolution, 2.34.89.58
sfWeight, 2.19.39
selftether, 2.34.89.69
sh24, 3.4
similarity, 2.35.44.8, 2.35.136.2
shadows, 2.23.5.34
site, 2.34.89.27
alignment, 2.34.89.28
functions, 2.34.40
residue, 2.34.89.30
intro, 1.7.1
slide, 2.34.89.31
progression, 2.34.78
sstructure backbone, 2.34.89.60
warning message, 2.35.191
sequence, 2.34.89.61
shineStyle, 2.22.24
to sequence, 2.34.89.61
shininess, 2.19.40
stack, 2.34.89.62
show, 2.34.90, 2.34.90.40
energy, 2.34.89.62, 2.34.94.1
alias, 2.34.90.7
stereo, 2.34.89.59
aliases, 2.34.90.7
swiss, 2.34.89.63
alignment, 2.34.90.8
name, 2.34.89.63
area, 2.34.90.9
symmetry, 2.34.89.66
atom, 2.34.90.10
bio, 2.34.89.65
type, 2.34.90.11
crystal, 2.34.89.64
atoms, 2.34.90.10
group, 2.34.89.64
bond, 2.34.90.12
to a torsion, 2.34.89.66
clash, 2.34.90.13
table, 2.34.89.67
color, 2.34.90.14
tautomer, 2.34.89.32
column, 2.34.90.15
terms, 2.34.89.68
comp_matrix, 2.34.90.16
tether, 2.34.89.70
database, 2.34.90.17
append, 2.34.89.71
drestraint, 2.34.90.18
texture, 2.34.89.33
type, 2.34.90.19
type, 2.34.89.72
energy, 2.34.90.20
mmff, 2.34.89.78
atom, 2.34.90.22
molecule, 2.34.89.76
quantum, 2.34.90.21
object, 2.34.89.75
gradient, 2.34.90.23
property, 2.34.89.74
hbond, 2.34.90.24
sequence, 2.34.89.77
exact, 2.34.90.25
surface, 2.34.89.73
hbondexact, 2.34.90.25
variable grid, 2.34.89.85
html, 2.34.90.26
variablegrid, 2.34.89.85
iarray, 2.34.90.27
view, 2.34.89.81
integer, 2.34.90.28
vrestraint, 2.34.89.82
key, 2.34.90.4
vrestraintvs_var, 2.34.89.83
label, 2.34.90.29
radii, 2.34.89.79
library, 2.34.90.30
vwelradii, 2.34.89.80
link, 2.34.90.31
vwradii, 2.34.89.79
logical, 2.34.90.32
window, 2.34.89.86
map, 2.34.90.5
mol2, 2.34.90.34
sinking number, 2.19.35
molecule, 2.34.90.35
molecules, 2.34.90.6
arrows, 2.34.89.27
object, 2.34.90.36
table, 5.8.6.1
pdb, 2.34.90.37
sites, 2.34.22.26
pharmacophore type, 2.34.90.55
by residue selection, 2.34.22.24
pmf, 2.34.90.38
sequences, 5.8.6.1
preferences, 2.34.90.39
sixthe power, 2.22.6
profile, 2.34.90.40
residue, 2.34.90.41
intro, 1.4.1.2
type, 2.34.90.42
residuetype, 2.34.90.42
transition time, 2.34.23.21
segment, 2.34.90.43
slides, 2.35.190
selftether, 2.34.90.1
sequence, 2.34.90.44
sln, 5.8.8
shell variable, 2.34.90.3
slurm, 3.13.1.20
site, 2.34.90.2
smallest set of smallest rings, 2.35.130
stack, 2.34.90.45
smart, 2.23.14.7
svariable, 2.34.90.3
smarts, 2.35.70.2
table, 2.34.90.46
as database, 2.34.90.17
to chem-table element, 2.35.109
term, 2.34.90.47
smooth alignment, 2.35.146.4
tethers, 2.34.90.48
interpolation, 2.34.94.3
uniprot, 2.34.90.49
map, 2.35.146.5
entry, 2.34.90.49
rarray, 2.35.146.1
version, 2.34.90.50
surface, 2.37.88
volume, 2.34.90.53
soap, 2.32
map, 2.34.90.54
soft trim, 2.35.178
volumemap, 2.34.90.54
solid sphere, 2.23.5.11
vrestraint, 2.34.90.51
solubility, 2.35.114
type, 2.34.90.52
vrestraints, 2.34.90.51
showcomp_matrix, 2.34.90.16
solvent accessible area, 2.18.23
showing weak hydrogen bonds, 2.23.5.25
side chain, 2.37.90
flexibility, 2.37.90
array, 2.34.91.1
sigma function, 2.35.44.8, 2.35.136.2
arrays, 2.34.91.1
level, 2.23.7.5
column, 2.34.91.3
signal recognition measure, 2.37.21
table, 2.34.91.3
similar chains, 2.35.137.13
molecules, 2.34.91.5
similarity, 2.34.35.10, 2.34.35.11
object, 2.34.91.4
simple expressions, 2.10.1.1
stack, 2.34.91.6
string substitution, 2.35.126.2
table, 2.34.91.2
simplified representation, 2.23.5.16
sortSeqByLength, 2.37.81
compound, 2.35.179
space, 2.34.35.9
mesh structure, 2.34.15.2
group, 2.34.69
simulation duration, 2.19.47
transformations, 2.35.176
temperature, 2.19.46
sparse atoms, 2.23.14.3
intro, 1.4.2
spawn background job, 2.34.65.1
single point energy, 2.34.90.21
special values, 2.35.168
spectral decomposition, 2.35.45
stack object, 2.34.94.2
split, 2.34.92
torsion type, 2.34.94
column values, 2.34.92.5
strength of hydrogen bond, 2.34.23.14
grob, 2.34.92.1
string, 5.8.11
group, 2.34.92.2
array, 2.34.92.3
filtering, 2.35.178
into chains, 2.34.92.6
inversion, 2.35.156.1
molsar, 2.34.65.28
label, 2.34.23.12
object, 2.34.92.6
to molecules, 2.34.92.6
variables, 2.21
sequence, 2.34.92.4
strings, 2.21
table cell, 2.34.92.5
strip, 2.34.96
tree, 2.34.92.7
struct, 2.35.99.2
splitting selection, 2.8.11
spreadsheet, 2.34.84.44
optimization, 2.34.35.1
sprintf, 2.34.93
superposition, 2.34.3.5
analysis, 3.3
sqlite, 3.5.1
comparison, 2.35.23.2
sqrt, 2.35.37
factors, 3.11.1
square matrix to element pairs, 2.35.160.5
structure, 3.11.1
ssThreshold, 2.19.41
sub-alignment to selection, 2.35.128
ssWeight, 2.19.42
sub-matrix, 2.35.90.2
ssbond, 5.4.5
submap, 2.35.86
ssearchStep, 2.19.43
subroutine, 2.34.64
ssign sstructure segment, 2.34.5.2
subset, 2.6
stack, 2.18.12, 2.18.13, 2.18.15, 2.22.7, 2.34.89.62, 2.34.94, 2.34.94.1, 2.35.66.6, 2.35.160.6, 5.3.12, 5.8.9
bin size, 2.34.14
cleaning, 2.34.22.17
search, 2.34.35.4
extension, 2.34.4.2
grid engine, 3.13.1.20
multiplication, 2.34.4.2
merge, 3.7.7
faq, 3.3.1
standard chemical form, 2.34.70.4
how to, 3.3.1
deviation, 2.35.133
minimize, 2.34.98
standardization, 2.34.22.11
support, 1.3
chemical, 2.34.70
suppressing view changes, 2.34.23.21
startup, 3.1.2.3
static RMSD, 2.35.155
accessibility, 2.34.90.9
and dynamic hbonds, 2.23.5.24
statistical thermodynamics, 2.35.47
charge, 5.7.13
color, 2.34.89.17
reconstruction, 3.8.9
dot density, 2.23.5.55
stereo-specific hydrogens, 2.34.22.11
energy, 2.22.25, 2.34.89.73
stereoisomer, 2.34.30
mesh, 2.35.192.3
stereoisomers, 2.20.16
point selection, 2.35.192
stick, 5.8.10
term, 2.19.39
store, 2.34.94
surfaceAccuracy, 2.18.23
surfaceMethod, 2.22.25
frame, 2.34.94.3
surfaceTension, 2.19.44
image, 2.34.65.20
svariable, 5.8.12
export, 2.23.9.14
terminal font, 2.38.14
map, 2.35.160.7
window, 2.34.44
swapping protein fragments, 3.8.7
terms, 2.17
swiss, 2.34.89.63
hydrogen bonding, 2.19.21
swissFields, 2.24.10
test, 2.34.100
swissprot, 2.34.89.27
binary, 2.34.100.1
symmetrization of a matrix, 2.35.90.3
testing if argument exists, 2.35.59
symmetry, 2.35.176
faq, 3.10
text, 2.35.89
group, 2.18.2
search in tables, 2.35.56.2
problem, 2.34.69
to script, 5.8.2
syntax highlighting, 5.8.2
texture, 5.5.3
sys, 2.34.99
tga, 5.9.3
system, 5.10.2
then, 2.34.101
command, 2.34.99
thickness, 2.23.9.14
copy, 2.21.26
thread to template, 2.34.66.5
file move, 2.21.28
threading, 2.35.5.1
list file, 2.21.27
remove, 2.21.29
thumbnails, 2.35.68
tif, 5.9.6
actions, 5.9.2.4
time, 2.35.38, 2.35.156.2
column, 2.35.99
timeLimit, 2.19.47
format, 2.34.89.42
tolFunc, 2.19.49
plot, 2.34.65.32
tolGrad, 2.19.48
transformations, 2.35.104
topological psa, 5.7.12
creation, 2.34.43.3
torScan, 2.37.84
display style, 5.9.1
torsion, 2.35.136.3
expression, 5.9.2
rmsd comparison, 2.34.14.2
from matrix, 2.35.160.4
scan, 2.37.84
grid view, 5.9.1
torsions, 2.35.102.3
of atoms and distances, 2.35.160.10
score, 2.36.2
operations, 5.9.2.1
tpsa, 5.7.12
plot, 5.9.2.3
principal component analysis, 2.34.65.29
file, 2.38.17
print, 2.34.90.46
frame writing, 2.34.23.17
row, 2.34.72.4
smoothing, 2.34.23.17
label mark, 2.34.89.45.2
transform, 2.34.102, 2.34.102.2
mark, 2.35.79
general, 2.34.102
selected row numbers, 2.35.70
grob coordinates, 2.34.102.2
subset, 5.9.2.2
molecules, 2.34.102.2
show html, 2.34.108.1
sarray, 2.34.102.1
targa, 5.9.3
target coordinates, 5.9.4
vector, 5.9.7
tautomer, 2.34.31
and symmetry, 3.10
tempCycle, 2.19.46
transforming points, 2.35.192.5
tempLocal, 2.19.45
temperature, 2.19.46
transparency, 2.34.89.43, 5.5.3
variations in optimizer, 2.19.46
background, 2.34.110.36
template docking, 3.13.1.19
grob, 2.34.23.11
tensor product of two vectors, 2.35.90
grobs, 2.23.5.57
cluster, 2.13
menu, 2.23.10.1
delete, 2.34.22.36
menus, 2.33
label format, 2.35.99.5
user-defined properties, 2.34.89.35
representatives, 2.13.1
solvation parameters, 2.35.7
trim string array, 2.34.102.1
user_startup, 3.1.2.4
trimming grid map values, 2.35.178
icm, 3.1.2
true positives, 2.35.136.5
guide, 3
truncate alignment, 2.34.65.34
v-synthes, 3.13.1.25
values, 2.35.178
v_, 2.8.1
van der Waals surface, 2.23.5.56
tsShapeData, 2.23.14.12
varLabelStyle, 2.22.27
table format, 2.34.84.44
variable restraint, 2.34.89.82
two alignments, 2.35.44.13
selection, 2.8.9
dimensional plot, 2.35.146.2
vdW gap, 2.35.151
set comparison, 2.35.44.8, 2.35.136.2
vector, 2.35.102.6
sets, 2.35.70.10
dot product, 2.35.187.1
txdoc browser, 2.34.84.4
length, 2.35.103
type, 2.35.182.1
product, 2.35.187.1
tzMethod, 2.22.26
transformation, 2.35.104
tzWeight, 2.19.50
vertex, 2.34.13.4.2
ultra large libraries, 3.13.1.25
connectivity, 2.35.90.13
uncharge functional groups, 2.34.70.2
vertexes, 2.34.13.4.2
unclip, 2.34.23.2
vertical alignment block, 2.34.65.34
underline, 2.34.89.39.1
workspace, 2.23.8.6
undisplay, 2.34.104
vertices, 2.34.13.4.2
graphics, 2.34.105
vicinity, 2.19.51
window, 2.34.105
video, 2.34.110.31
unfix, 2.34.106
union, 2.35.70.10
point, 2.35.190
restoration, 2.35.73
atomic order, 2.34.65.39
transition, 2.34.89.81
column values, 2.34.43.4
views, 5.8.14
names, 2.35.99
virtual, 5.10.3
new object name, 2.35.99
arrays, 2.34.1.1.1
smiles, 2.34.65.39
chemistry, 2.34.70, 2.35.102.4
field, 2.34.7.2
grep, 2.34.84.1
unlink alignments, 2.34.22.21
intro, 1.4.2.7
sequences, 2.34.22.21
screening, 3.18
variables, 2.34.22.21
visitsAction, 2.22.28
update database, 2.34.70.5
speadsheet, 2.34.1.1.1
cluster, 3.13.1.15
updates, 1.1
intro, 1.4.2.7
updating atom pairs, 2.20.27
job queueing, 3.13.1.15
upper case, 2.35.171
overview, 3.13.1
url string parsing, 2.35.160
parallelization, 3.13.1.14
user atom display, 2.23.5.3
results, 3.13.1.17
commands, 2.34.84.3
scores storage, 3.13.1.16
defaults, 2.34.110.42
threshold, 3.13.1.11
environment, 3.1.2.2
vls_intro, 3.13.1.10
vrestraint, 5.10.5
alignment, 2.34.110.23
file, 2.38.23
chemical, 2.34.110.22
type, 5.10.6
parray, 2.34.110.21
file, 2.38.22
index, 2.34.84.24, 2.34.110.24
vs_, 2.8.9
blast, 2.34.110.25
vs_out, 2.24.15
fasta, 2.34.110.24
vwCutoff, 2.19.52
library, 2.34.110.26
vwExpand, 2.19.53
map, 2.34.110.27
vwExpandDisplay, 2.19.54
matrix, 2.34.110.6
vwMethod, 2.22.29
model, 2.34.110.28
vwSoftMaxEnergy, 2.19.55
mol, 2.34.110.29
wait, 2.34.107
mol2, 2.34.110.30
warning, 2.23.14.3
molcart, 2.34.110.7
message, 2.35.191
movie, 2.34.110.31
suppression, 2.20.28
object, 2.34.110.32
water.dielectric constant, 2.19.15
parray, 2.34.110.34
waterRadius, 2.19.56
simple, 2.34.110.33
wavefront format, 2.34.65.11
pdb, 2.23.14.14, 2.34.110.35
png, 2.34.110.36
table, 2.34.108.1
postscript, 2.34.110.37
webEntrezOption, 2.22.30
pov, 2.34.110.38
weighted rmsd, 2.23.14
povray, 2.34.110.38
while, 2.34.109
project, 2.34.110.2
whole string, 2.35.126.1
rarray, 2.34.110.4
window averaging, 2.35.146.1
sarray, 2.34.110.5
layout, 2.35.156.9
sequence, 2.34.110.39
width and height, 2.35.190
session, 2.34.110.40
windowSize, 2.18.24
several array, 2.34.110.8
movie, 2.34.110.31
simple object, 2.34.110.33
wire, 5.10.7
stack, 2.34.110.41
wireBondSeparation, 2.19.57
system preference, 2.34.110.42
wireStyle, 2.22.31
table, 2.34.110.10
workspace, 2.34.105
mol, 2.34.110.11
write, 2.34.110
with links, 2.34.110.19
album, 2.34.110.21
tether, 2.34.110.9
alignment, 2.34.110.1
tethers, 2.34.110.9
array, 2.34.110.8
trajectory, 2.34.23.17
table, 2.34.110.8
vs_var, 2.34.110.43
binary, 2.34.110.2
writevs_var, 2.34.110.43
blast, 2.34.110.25
x-ray crystallography, 2.34.90.22
column, 2.34.110.12
xlsx, 2.34.84.44, 2.34.110.10
database, 2.34.110.13
drestraint, 2.34.110.14
drugbank example, 2.12
type, 2.34.110.15
xpdb, 2.34.84.2
factor, 2.34.110.16
xplor format, 2.34.84.27
gamess, 2.34.110.17
xrMethod, 2.22.32
grob, 2.34.110.18
xrWeight, 2.19.58
html, 2.34.110.19
xray density to rectangular energy map, 2.34.65.31
iarray, 2.34.110.3
xstick, 5.10.8
image, 2.34.110.20
radii, 2.34.89.2