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If you are going to make any energy calculation in ICM (eg docking, display H-bonds, display electrostatic and binding property surfaces etc..) it is necesary to convert a protein or chemical into an ICM object.
To convert a PDB structure into an ICM object follow the steps shown below:
- Right click on the name of the protein you wish to convert in the ICM Workspace.
- A dialog box will be displayed.Check the boxes as desired. If you are performing important calculations then it is necessary to optimize all hydrogens and ASN, GLU, PRO, and CYS.
If your object is an ICM object it will tell you in the ICM Workspace:
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