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Contents
 
Introduction
How To Guide
Getting Started
Molecular Graphics
Slides and Documents
ActiveICM
Movie Making
Sequences & Alignments
Protein Structure Analysis
Protein Superposition
Crystallographic Analysis
Homology & Modeling
3D Predict
Molecular Mechanics
Cheminformatics
Chemsitry Menu
Docking
Ligand Editor
 Setup Ligand and Receptor
 Preferences
 Display Options
 Re-Dock
 Edit Ligand
 Ligand linker
 Replacement Group
 Ligand Tethers
Tables
Local Databases
FAQs
Tutorials
 
Index
PrevICM User's Guide
18.4 Re-Dock and Minimize Ligand
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In the Docking/Load Example the ligand is not optimally bound to the receptor. A clash between one of the atoms and the receptor is highlighted by an orange star (see below). We can also calculate the binding energy of the receptor complex and Score.

To remove this clash we can re-dock or minimize the biotin ligand. To do this click the "Re-Dock" ligand button.


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